Author: Erik Garrison

Downloads per author, site-wide

Preprints

Genome Graphs

• Downloaded 8,764 times
• Download rankings, all-time:
  • Site-wide: 350 out of 101,416
  • In bioinformatics: 40 out of 9,295
• Year to date:
  • Site-wide: 3,025 out of 101,416
• Since beginning of last month:
  • Site-wide: 6,216 out of 101,416

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

• Downloaded 5,120 times
• Download rankings, all-time:
  • Site-wide: 837 out of 101,416
  • In genomics: 165 out of 6,281
• Year to date:
  • Site-wide: 3,813 out of 101,416
• Since beginning of last month:
  • Site-wide: 12,688 out of 101,416

Computational Pan-Genomics: Status, Promises and Challenges

• Downloaded 4,458 times
• Download rankings, all-time:
  • Site-wide: 1,084 out of 101,416
  • In genomics: 216 out of 6,281
• Year to date:
  • Site-wide: 14,819 out of 101,416
• Since beginning of last month:
  • Site-wide: 11,539 out of 101,416

Sequence variation aware genome references and read mapping with the variation graph toolkit

• Downloaded 3,750 times
• Download rankings, all-time:
  • Site-wide: 1,456 out of 101,416
  • In genomics: 299 out of 6,281
• Year to date:
  • Site-wide: 20,799 out of 101,416
• Since beginning of last month:
  • Site-wide: 22,847 out of 101,416

Towards complete and error-free genome assemblies of all vertebrate species

• Downloaded 3,662 times
• Download rankings, all-time:
  • Site-wide: 1,519 out of 101,416
  • In genomics: 312 out of 6,281
• Year to date:
  • Site-wide: 401 out of 101,416
• Since beginning of last month:
  • Site-wide: 301 out of 101,416

Landscape and Selection of Vaccine Epitopes in SARS-CoV-2

• Downloaded 1,600 times
• Download rankings, all-time:
  • Site-wide: 6,150 out of 101,416
  • In immunology: 192 out of 3,159
• Year to date:
  • Site-wide: 1,278 out of 101,416
• Since beginning of last month:
  • Site-wide: 2,304 out of 101,416

Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph

• Downloaded 1,566 times
• Download rankings, all-time:
  • Site-wide: 6,371 out of 101,416
  • In genomics: 1,000 out of 6,281
• Year to date:
  • Site-wide: 3,445 out of 101,416
• Since beginning of last month:
  • Site-wide: 4,746 out of 101,416

Genotyping structural variants in pangenome graphs using the vg toolkit

• Downloaded 1,524 times
• Download rankings, all-time:
  • Site-wide: 6,683 out of 101,416
  • In bioinformatics: 1,145 out of 9,295
• Year to date:
  • Site-wide: 15,429 out of 101,416
• Since beginning of last month:
  • Site-wide: 29,966 out of 101,416

A Graph Extension of the Positional Burrows-Wheeler Transform and its Applications

• Downloaded 1,433 times
• Download rankings, all-time:
  • Site-wide: 7,391 out of 101,416
  • In bioinformatics: 1,254 out of 9,295
• Year to date:
  • Site-wide: 82,217 out of 101,416
• Since beginning of last month:
  • Site-wide: 72,875 out of 101,416

Genome Graphs and the Evolution of Genome Inference

• Downloaded 1,342 times
• Download rankings, all-time:
  • Site-wide: 8,286 out of 101,416
  • In bioinformatics: 1,386 out of 9,295
• Year to date:
  • Site-wide: 78,447 out of 101,416
• Since beginning of last month:
  • Site-wide: 72,074 out of 101,416

Human genomic regions with exceptionally high or low levels of population differentiation identified from 911 whole-genome sequences

• Downloaded 1,269 times
• Download rankings, all-time:
  • Site-wide: 9,107 out of 101,416
  • In genomics: 1,338 out of 6,281
• Year to date:
  • Site-wide: 81,383 out of 101,416
• Since beginning of last month:
  • Site-wide: 65,046 out of 101,416

Superbubbles, Ultrabubbles and Cacti

• Downloaded 1,109 times
• Download rankings, all-time:
  • Site-wide: 11,380 out of 101,416
  • In bioinformatics: 1,819 out of 9,295
• Year to date:
  • Site-wide: 60,400 out of 101,416
• Since beginning of last month:
  • Site-wide: 84,192 out of 101,416

Purging of deleterious variants due to drift and founder effect in Italian populations with extended autozygosity

• Downloaded 935 times
• Download rankings, all-time:
  • Site-wide: 15,006 out of 101,416
  • In evolutionary biology: 851 out of 6,039
• Year to date:
  • Site-wide: 73,271 out of 101,416
• Since beginning of last month:
  • Site-wide: 81,900 out of 101,416

A Diploid Assembly-based Benchmark for Variants in the Major Histocompatibility Complex

• Downloaded 817 times
• Download rankings, all-time:
  • Site-wide: 18,522 out of 101,416
  • In genomics: 2,241 out of 6,281
• Year to date:
  • Site-wide: 8,590 out of 101,416
• Since beginning of last month:
  • Site-wide: 15,758 out of 101,416

Haplotype-aware graph indexes

• Downloaded 720 times
• Download rankings, all-time:
  • Site-wide: 22,328 out of 101,416
  • In bioinformatics: 3,153 out of 9,295
• Year to date:
  • Site-wide: 46,730 out of 101,416
• Since beginning of last month:
  • Site-wide: 49,605 out of 101,416

Succinct dynamic variation graphs

• Downloaded 510 times
• Download rankings, all-time:
  • Site-wide: 35,656 out of 101,416
  • In bioinformatics: 4,491 out of 9,295
• Year to date:
  • Site-wide: 7,394 out of 101,416
• Since beginning of last month:
  • Site-wide: 22,056 out of 101,416

Genomic diversity and novel genome-wide association with fruit morphology in Capsicum, from 746k polymorphic sites.

• Downloaded 453 times
• Download rankings, all-time:
  • Site-wide: 41,143 out of 101,416
  • In genetics: 2,359 out of 5,038
• Year to date:
  • Site-wide: 47,736 out of 101,416
• Since beginning of last month:
  • Site-wide: 59,397 out of 101,416