Author: Erik Garrison

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Preprints

Genome Graphs

• Downloaded 8,952 times
• Download rankings, all-time:
  • Site-wide: 805
  • In bioinformatics: 44
• Year to date:
  • Site-wide: 4,618
• Since beginning of last month:
  • Site-wide: 9,166

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

• Downloaded 5,228 times
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  • Site-wide: 1,635
  • In genomics: 174
• Year to date:
  • Site-wide: 21,845
• Since beginning of last month:
  • Site-wide: 20,271

Computational Pan-Genomics: Status, Promises and Challenges

• Downloaded 4,549 times
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  • Site-wide: 1,978
  • In genomics: 225
• Year to date:
  • Site-wide: 22,788
• Since beginning of last month:
  • Site-wide: 16,769

Towards complete and error-free genome assemblies of all vertebrate species

• Downloaded 4,254 times
• Download rankings, all-time:
  • Site-wide: 2,173
  • In genomics: 257
• Year to date:
  • Site-wide: 1,687
• Since beginning of last month:
  • Site-wide: 2,535

Sequence variation aware genome references and read mapping with the variation graph toolkit

• Downloaded 3,802 times
• Download rankings, all-time:
  • Site-wide: 2,572
  • In genomics: 313
• Year to date:
  • Site-wide: 39,583
• Since beginning of last month:
  • Site-wide: 35,868

Landscape and Selection of Vaccine Epitopes in SARS-CoV-2

• Downloaded 1,825 times
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  • Site-wide: 7,467
  • In immunology: 198
• Year to date:
  • Site-wide: 12,379
• Since beginning of last month:
  • Site-wide: 11,692

Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph

• Downloaded 1,687 times
• Download rankings, all-time:
  • Site-wide: 8,446
  • In genomics: 976
• Year to date:
  • Site-wide: 10,733
• Since beginning of last month:
  • Site-wide: 14,690

Genotyping structural variants in pangenome graphs using the vg toolkit

• Downloaded 1,581 times
• Download rankings, all-time:
  • Site-wide: 9,330
  • In bioinformatics: 1,169
• Year to date:
  • Site-wide: 24,153
• Since beginning of last month:
  • Site-wide: 29,996

A Graph Extension of the Positional Burrows-Wheeler Transform and its Applications

• Downloaded 1,444 times
• Download rankings, all-time:
  • Site-wide: 10,643
  • In bioinformatics: 1,353
• Year to date:
  • Site-wide: 114,288
• Since beginning of last month:
  • Site-wide: 109,385

Genome Graphs and the Evolution of Genome Inference

• Downloaded 1,351 times
• Download rankings, all-time:
  • Site-wide: 11,812
  • In bioinformatics: 1,487
• Year to date:
  • Site-wide: 106,603
• Since beginning of last month:
  • Site-wide: 120,165

Human genomic regions with exceptionally high or low levels of population differentiation identified from 911 whole-genome sequences

• Downloaded 1,285 times
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  • Site-wide: 12,705
  • In genomics: 1,416
• Year to date:
  • Site-wide: 112,151
• Since beginning of last month:
  • Site-wide: 100,851

Superbubbles, Ultrabubbles and Cacti

• Downloaded 1,128 times
• Download rankings, all-time:
  • Site-wide: 15,462
  • In bioinformatics: 1,940
• Year to date:
  • Site-wide: 74,377
• Since beginning of last month:
  • Site-wide: 108,515

Purging of deleterious variants due to drift and founder effect in Italian populations with extended autozygosity

• Downloaded 961 times
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  • Site-wide: 19,648
  • In evolutionary biology: 901
• Year to date:
  • Site-wide: 83,581
• Since beginning of last month:
  • Site-wide: 59,319

Genotyping common, large structural variations in 5,202 genomes using pangenomes, the Giraffe mapper, and the vg toolkit

• Downloaded 882 times
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  • Site-wide: 22,303
  • In bioinformatics: 2,712
• Year to date:
  • Site-wide: 1,401
• Since beginning of last month:
  • Site-wide: 350

A Diploid Assembly-based Benchmark for Variants in the Major Histocompatibility Complex

• Downloaded 853 times
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  • Site-wide: 23,369
  • In genomics: 2,299
• Year to date:
  • Site-wide: 31,017
• Since beginning of last month:
  • Site-wide: 57,679

Haplotype-aware graph indexes

• Downloaded 780 times
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  • Site-wide: 26,447
  • In bioinformatics: 3,153
• Year to date:
  • Site-wide: 49,644
• Since beginning of last month:
  • Site-wide: 31,264

Succinct dynamic variation graphs

• Downloaded 564 times
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  • Site-wide: 40,609
  • In bioinformatics: 4,461
• Year to date:
  • Site-wide: 84,963
• Since beginning of last month:
  • Site-wide: 26,883

Genomic diversity and novel genome-wide association with fruit morphology in Capsicum, from 746k polymorphic sites.

• Downloaded 487 times
• Download rankings, all-time:
  • Site-wide: 48,491
  • In genetics: 2,366
• Year to date:
  • Site-wide: 62,207
• Since beginning of last month:
  • Site-wide: 68,832