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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,594 bioRxiv papers from 298,187 authors.

Author: Roland Eils

Rankings

  • All-time downloads: 36,510 (rank: 457 out of 298,180)
  • Categories:
    • bioinformatics: 4,480 (rank: 1,501 out of 26,014)
    • cancer biology: 3,323 (rank: 456 out of 19,079)
    • cell biology: 11,789 (rank: 165 (tie) out of 20,277)
    • genomics: 14,789 (rank: 487 (tie) out of 34,034)
    • immunology: 483 (rank: 4,544 (tie) out of 14,004)
    • synthetic biology: 1,379 (rank: 515 (tie) out of 2,928)
    • systems biology: 267 (rank: 6,693 (tie) out of 8,986)

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,789 times
  • Download rankings, all-time:
    • Site-wide: 86 out of 67,594
    • In cell biology: 3 out of 3,290
  • Year to date:
    • Site-wide: 4,947 out of 67,594
  • Since beginning of last month:
    • Site-wide: 10,075 out of 67,594

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,302 times
  • Download rankings, all-time:
    • Site-wide: 1,924 out of 67,594
    • In genomics: 418 out of 4,581
  • Year to date:
    • Site-wide: 49,297 out of 67,594
  • Since beginning of last month:
    • Site-wide: 44,480 out of 67,594

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

genomics more details view paper
  • Downloaded 2,282 times
  • Download rankings, all-time:
    • Site-wide: 1,953 out of 67,594
    • In genomics: 423 out of 4,581
  • Year to date:
    • Site-wide: 5,814 out of 67,594
  • Since beginning of last month:
    • Site-wide: 35,181 out of 67,594

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 2,003 times
  • Download rankings, all-time:
    • Site-wide: 2,450 out of 67,594
    • In genomics: 506 out of 4,581
  • Year to date:
    • Site-wide: 47,592 out of 67,594
  • Since beginning of last month:
    • Site-wide: 55,154 out of 67,594

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

genomics more details view paper
  • Downloaded 1,960 times
  • Download rankings, all-time:
    • Site-wide: 2,545 out of 67,594
    • In genomics: 526 out of 4,581
  • Year to date:
    • Site-wide: 6,167 out of 67,594
  • Since beginning of last month:
    • Site-wide: 12,719 out of 67,594

pheno-seq - linking morphological features to gene expression in 3D cell culture systems

genomics more details view paper
  • Downloaded 1,510 times
  • Download rankings, all-time:
    • Site-wide: 3,968 out of 67,594
    • In genomics: 722 out of 4,581
  • Year to date:
    • Site-wide: 4,892 out of 67,594
  • Since beginning of last month:
    • Site-wide: 29,952 out of 67,594

The landscape of viral associations in human cancers

cancer biology more details view paper
  • Downloaded 1,503 times
  • Download rankings, all-time:
    • Site-wide: 4,006 out of 67,594
    • In cancer biology: 102 out of 2,278
  • Year to date:
    • Site-wide: 1,746 out of 67,594
  • Since beginning of last month:
    • Site-wide: 5,049 out of 67,594

Deciphering programs of transcriptional regulation by combined deconvolution of multiple omics layers

genomics more details view paper
  • Downloaded 1,273 times
  • Download rankings, all-time:
    • Site-wide: 5,249 out of 67,594
    • In genomics: 915 out of 4,581
  • Year to date:
    • Site-wide: 16,025 out of 67,594
  • Since beginning of last month:
    • Site-wide: 25,572 out of 67,594

Single nucleus RNA sequencing maps acinar cell states in a human pancreas cell atlas

genomics more details view paper
  • Downloaded 1,202 times
  • Download rankings, all-time:
    • Site-wide: 5,778 out of 67,594
    • In genomics: 974 out of 4,581
  • Year to date:
    • Site-wide: 1,449 out of 67,594
  • Since beginning of last month:
    • Site-wide: 952 out of 67,594

Genomic footprints of activated telomere maintenance mechanisms in cancer

genomics more details view paper
  • Downloaded 1,172 times
  • Download rankings, all-time:
    • Site-wide: 6,048 out of 67,594
    • In genomics: 1,012 out of 4,581
  • Year to date:
    • Site-wide: 10,481 out of 67,594
  • Since beginning of last month:
    • Site-wide: 21,604 out of 67,594

Modeling glioblastoma invasion using human brain organoids and single-cell transcriptomics

cancer biology more details view paper
  • Downloaded 1,017 times
  • Download rankings, all-time:
    • Site-wide: 7,604 out of 67,594
    • In cancer biology: 202 out of 2,278
  • Year to date:
    • Site-wide: 1,930 out of 67,594
  • Since beginning of last month:
    • Site-wide: 2,543 out of 67,594

ACEseq - allele specific copy number estimation from whole genome sequencing

bioinformatics more details view paper
  • Downloaded 1,007 times
  • Download rankings, all-time:
    • Site-wide: 7,726 out of 67,594
    • In bioinformatics: 1,365 out of 6,655
  • Year to date:
    • Site-wide: 16,100 out of 67,594
  • Since beginning of last month:
    • Site-wide: 14,424 out of 67,594

Framework For Quality Assessment Of Whole Genome, Cancer Sequences

genomics more details view paper
  • Downloaded 895 times
  • Download rankings, all-time:
    • Site-wide: 9,340 out of 67,594
    • In genomics: 1,409 out of 4,581
  • Year to date:
    • Site-wide: 28,633 out of 67,594
  • Since beginning of last month:
    • Site-wide: 32,567 out of 67,594

Segmentation-free inference of cell-types from in situ transcriptomics data

bioinformatics more details view paper
  • Downloaded 861 times
  • Download rankings, all-time:
    • Site-wide: 9,946 out of 67,594
    • In bioinformatics: 1,713 out of 6,655
  • Year to date:
    • Site-wide: 2,583 out of 67,594
  • Since beginning of last month:
    • Site-wide: 1,403 out of 67,594

Resolving Drug Effects In Patient-Derived Cancer Cells Links Organoid Responses To Genome Alterations

cancer biology more details view paper
  • Downloaded 803 times
  • Download rankings, all-time:
    • Site-wide: 11,079 out of 67,594
    • In cancer biology: 328 out of 2,278
  • Year to date:
    • Site-wide: 50,448 out of 67,594
  • Since beginning of last month:
    • Site-wide: 40,187 out of 67,594

Web-based design and analysis tools for CRISPR base editing

bioinformatics more details view paper
  • Downloaded 708 times
  • Download rankings, all-time:
    • Site-wide: 13,307 out of 67,594
    • In bioinformatics: 2,152 out of 6,655
  • Year to date:
    • Site-wide: 17,560 out of 67,594
  • Since beginning of last month:
    • Site-wide: 49,925 out of 67,594

Cell-specific CRISPR/Cas9 activation by microRNA-dependent expression of anti-CRISPR proteins

synthetic biology more details view paper
  • Downloaded 706 times
  • Download rankings, all-time:
    • Site-wide: 13,365 out of 67,594
    • In synthetic biology: 221 out of 642
  • Year to date:
    • Site-wide: 8,472 out of 67,594
  • Since beginning of last month:
    • Site-wide: 32,490 out of 67,594

Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders

bioinformatics more details view paper
  • Downloaded 572 times
  • Download rankings, all-time:
    • Site-wide: 17,978 out of 67,594
    • In bioinformatics: 2,715 out of 6,655
  • Year to date:
    • Site-wide: 5,279 out of 67,594
  • Since beginning of last month:
    • Site-wide: 5,683 out of 67,594

Identification and prioritisation of causal variants in human genetic disorders from exome or whole genome sequencing data

bioinformatics more details view paper
  • Downloaded 553 times
  • Download rankings, all-time:
    • Site-wide: 18,767 out of 67,594
    • In bioinformatics: 2,810 out of 6,655
  • Year to date:
    • Site-wide: 35,533 out of 67,594
  • Since beginning of last month:
    • Site-wide: 57,262 out of 67,594

Impact of cancer mutational signatures on transcription factor motifs in the human genome

bioinformatics more details view paper
  • Downloaded 516 times
  • Download rankings, all-time:
    • Site-wide: 20,545 out of 67,594
    • In bioinformatics: 3,009 out of 6,655
  • Year to date:
    • Site-wide: 29,712 out of 67,594
  • Since beginning of last month:
    • Site-wide: 50,602 out of 67,594

Single-fluorescent protein reporters allow parallel quantification of NK cell-mediated granzyme and caspase activities in single target cells

immunology more details view paper
  • Downloaded 483 times
  • Download rankings, all-time:
    • Site-wide: 22,248 out of 67,594
    • In immunology: 416 out of 1,724
  • Year to date:
    • Site-wide: 20,378 out of 67,594
  • Since beginning of last month:
    • Site-wide: 25,561 out of 67,594

Computational design of anti-CRISPR proteins with improved inhibition potency and expanded specificity

synthetic biology more details view paper
  • Downloaded 474 times
  • Download rankings, all-time:
    • Site-wide: 22,822 out of 67,594
    • In synthetic biology: 355 out of 642
  • Year to date:
    • Site-wide: 7,237 out of 67,594
  • Since beginning of last month:
    • Site-wide: 9,944 out of 67,594

Unraveling mitotic protein networks by 3D multiplexed epitope drug screening

systems biology more details view paper
  • Downloaded 267 times
  • Download rankings, all-time:
    • Site-wide: 40,327 out of 67,594
    • In systems biology: 1,248 out of 1,871
  • Year to date:
    • Site-wide: 59,860 out of 67,594
  • Since beginning of last month:
    • Site-wide: 56,618 out of 67,594

HTSlib-js: Developer toolkit for a client-side JavaScript interface for HTSlib

bioinformatics more details view paper
  • Downloaded 263 times
  • Download rankings, all-time:
    • Site-wide: 40,751 out of 67,594
    • In bioinformatics: 4,815 out of 6,655
  • Year to date:
    • Site-wide: 43,890 out of 67,594
  • Since beginning of last month:
    • Site-wide: 54,032 out of 67,594

Optogenetic control of Neisseria meningitidis Cas9 genome editing using an engineered, light-switchable anti-CRISPR protein

synthetic biology more details view paper
  • Downloaded 199 times
  • Download rankings, all-time:
    • Site-wide: 48,972 out of 67,594
    • In synthetic biology: 583 out of 642
  • Year to date:
    • Site-wide: 26,260 out of 67,594
  • Since beginning of last month:
    • Site-wide: 1,133 out of 67,594

Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the human AML cell line HL-60/S4

genomics more details view paper
  • Downloaded 190 times
  • Download rankings, all-time:
    • Site-wide: 50,173 out of 67,594
    • In genomics: 3,978 out of 4,581
  • Year to date:
    • Site-wide: 27,584 out of 67,594
  • Since beginning of last month:
    • Site-wide: 50,814 out of 67,594

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