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Author: Roland Eils

Rankings

  • All-time downloads: 48,188 (rank: 788 (tie) out of 394,375)
  • Categories:
    • bioinformatics: 5,885 (rank: 1,405 out of 33,528)
    • cancer biology: 4,322 (rank: 494 out of 27,342)
    • cell biology: 12,659 (rank: 167 out of 29,476)
    • genomics: 22,401 (rank: 360 out of 41,909)
    • immunology: 576 (rank: 8,206 (tie) out of 22,058)
    • synthetic biology: 2,003 (rank: 522 (tie) out of 4,115)
    • systems biology: 342 (rank: 8,261 (tie) out of 11,540)

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Preprints

The Human Cell Atlas

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    • In cell biology: 3 out of 4,752
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    • Site-wide: 5,896 out of 92,330
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    • Site-wide: 11,739 out of 92,330

SARS-CoV-2 receptor ACE2 and TMPRSS2 are predominantly expressed in a transient secretory cell type in subsegmental bronchial branches

genomics more details view paper
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    • Site-wide: 943 out of 92,330
    • In genomics: 200 out of 5,828
  • Year to date:
    • Site-wide: 242 out of 92,330
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    • Site-wide: 3,175 out of 92,330

Single nucleus and in situ RNA sequencing reveals cell topographies in the human pancreas

genomics more details view paper
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    • In genomics: 375 out of 5,828
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    • Site-wide: 734 out of 92,330
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    • Site-wide: 1,396 out of 92,330

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

genomics more details view paper
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    • In genomics: 513 out of 5,828
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    • Site-wide: 48,826 out of 92,330

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,354 times
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    • In genomics: 548 out of 5,828
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    • Site-wide: 84,597 out of 92,330
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    • Site-wide: 63,557 out of 92,330

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

genomics more details view paper
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    • In genomics: 603 out of 5,828
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    • Site-wide: 31,005 out of 92,330

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 2,072 times
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    • In genomics: 639 out of 5,828
  • Year to date:
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    • Site-wide: 63,465 out of 92,330

The landscape of viral associations in human cancers

cancer biology more details view paper
  • Downloaded 1,853 times
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    • In cancer biology: 98 out of 3,264
  • Year to date:
    • Site-wide: 11,077 out of 92,330
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    • Site-wide: 34,696 out of 92,330

pheno-seq - linking morphological features to gene expression in 3D cell culture systems

genomics more details view paper
  • Downloaded 1,692 times
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    • Site-wide: 4,968 out of 92,330
    • In genomics: 821 out of 5,828
  • Year to date:
    • Site-wide: 24,514 out of 92,330
  • Since beginning of last month:
    • Site-wide: 26,271 out of 92,330

Deciphering programs of transcriptional regulation by combined deconvolution of multiple omics layers

genomics more details view paper
  • Downloaded 1,516 times
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    • Site-wide: 5,993 out of 92,330
    • In genomics: 964 out of 5,828
  • Year to date:
    • Site-wide: 17,771 out of 92,330
  • Since beginning of last month:
    • Site-wide: 21,388 out of 92,330

Segmentation-free inference of cell-types from in situ transcriptomics data

bioinformatics more details view paper
  • Downloaded 1,487 times
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    • Site-wide: 6,179 out of 92,330
    • In bioinformatics: 1,088 out of 8,659
  • Year to date:
    • Site-wide: 3,845 out of 92,330
  • Since beginning of last month:
    • Site-wide: 11,800 out of 92,330

Modeling glioblastoma invasion using human brain organoids and single-cell transcriptomics

cancer biology more details view paper
  • Downloaded 1,418 times
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    • Site-wide: 6,667 out of 92,330
    • In cancer biology: 178 out of 3,264
  • Year to date:
    • Site-wide: 8,063 out of 92,330
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    • Site-wide: 36,356 out of 92,330

Genomic footprints of activated telomere maintenance mechanisms in cancer

genomics more details view paper
  • Downloaded 1,373 times
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    • Site-wide: 7,048 out of 92,330
    • In genomics: 1,094 out of 5,828
  • Year to date:
    • Site-wide: 20,051 out of 92,330
  • Since beginning of last month:
    • Site-wide: 22,860 out of 92,330

ACEseq - allele specific copy number estimation from whole genome sequencing

bioinformatics more details view paper
  • Downloaded 1,180 times
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    • Site-wide: 9,081 out of 92,330
    • In bioinformatics: 1,504 out of 8,659
  • Year to date:
    • Site-wide: 24,713 out of 92,330
  • Since beginning of last month:
    • Site-wide: 18,773 out of 92,330

Framework For Quality Assessment Of Whole Genome, Cancer Sequences

genomics more details view paper
  • Downloaded 1,010 times
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    • Site-wide: 11,769 out of 92,330
    • In genomics: 1,630 out of 5,828
  • Year to date:
    • Site-wide: 39,058 out of 92,330
  • Since beginning of last month:
    • Site-wide: 37,011 out of 92,330

Resolving Drug Effects In Patient-Derived Cancer Cells Links Organoid Responses To Genome Alterations

cancer biology more details view paper
  • Downloaded 892 times
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    • Site-wide: 14,248 out of 92,330
    • In cancer biology: 410 out of 3,264
  • Year to date:
    • Site-wide: 52,185 out of 92,330
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    • Site-wide: 47,463 out of 92,330

Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders

bioinformatics more details view paper
  • Downloaded 828 times
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    • Site-wide: 16,017 out of 92,330
    • In bioinformatics: 2,451 out of 8,659
  • Year to date:
    • Site-wide: 16,619 out of 92,330
  • Since beginning of last month:
    • Site-wide: 49,950 out of 92,330

Cell-specific CRISPR/Cas9 activation by microRNA-dependent expression of anti-CRISPR proteins

synthetic biology more details view paper
  • Downloaded 817 times
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    • Site-wide: 16,311 out of 92,330
    • In synthetic biology: 265 out of 871
  • Year to date:
    • Site-wide: 43,291 out of 92,330
  • Since beginning of last month:
    • Site-wide: 21,800 out of 92,330

Web-based design and analysis tools for CRISPR base editing

bioinformatics more details view paper
  • Downloaded 793 times
  • Download rankings, all-time:
    • Site-wide: 17,108 out of 92,330
    • In bioinformatics: 2,595 out of 8,659
  • Year to date:
    • Site-wide: 58,981 out of 92,330
  • Since beginning of last month:
    • Site-wide: 50,212 out of 92,330

Identification and prioritisation of causal variants in human genetic disorders from exome or whole genome sequencing data

bioinformatics more details view paper
  • Downloaded 674 times
  • Download rankings, all-time:
    • Site-wide: 21,822 out of 92,330
    • In bioinformatics: 3,129 out of 8,659
  • Year to date:
    • Site-wide: 36,877 out of 92,330
  • Since beginning of last month:
    • Site-wide: 28,372 out of 92,330

Computational design of anti-CRISPR proteins with improved inhibition potency and expanded specificity

synthetic biology more details view paper
  • Downloaded 659 times
  • Download rankings, all-time:
    • Site-wide: 22,579 out of 92,330
    • In synthetic biology: 362 out of 871
  • Year to date:
    • Site-wide: 24,899 out of 92,330
  • Since beginning of last month:
    • Site-wide: 61,929 out of 92,330

Impact of cancer mutational signatures on transcription factor motifs in the human genome

bioinformatics more details view paper
  • Downloaded 592 times
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    • Site-wide: 26,249 out of 92,330
    • In bioinformatics: 3,573 out of 8,659
  • Year to date:
    • Site-wide: 61,149 out of 92,330
  • Since beginning of last month:
    • Site-wide: 70,644 out of 92,330

Single-fluorescent protein reporters allow parallel quantification of NK cell-mediated granzyme and caspase activities in single target cells

immunology more details view paper
  • Downloaded 576 times
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    • Site-wide: 27,119 out of 92,330
    • In immunology: 698 out of 2,718
  • Year to date:
    • Site-wide: 49,898 out of 92,330
  • Since beginning of last month:
    • Site-wide: 32,041 out of 92,330

Optogenetic control of Neisseria meningitidis Cas9 genome editing using an engineered, light-switchable anti-CRISPR protein

synthetic biology more details view paper
  • Downloaded 527 times
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    • Site-wide: 30,359 out of 92,330
    • In synthetic biology: 463 out of 871
  • Year to date:
    • Site-wide: 13,140 out of 92,330
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    • Site-wide: 29,683 out of 92,330

Automated screening by 3D light-sheet microscopy with high spatial and temporal resolution reveals mitotic phenotypes

cell biology more details view paper
  • Downloaded 397 times
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    • Site-wide: 42,360 out of 92,330
    • In cell biology: 2,088 out of 4,752
  • Year to date:
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    • Site-wide: 39,137 out of 92,330

Unraveling mitotic protein networks by 3D multiplexed epitope drug screening

systems biology more details view paper
  • Downloaded 342 times
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    • Site-wide: 48,965 out of 92,330
    • In systems biology: 1,437 out of 2,366
  • Year to date:
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  • Since beginning of last month:
    • Site-wide: 50,987 out of 92,330

HTSlib-js: Developer toolkit for a client-side JavaScript interface for HTSlib

bioinformatics more details view paper
  • Downloaded 331 times
  • Download rankings, all-time:
    • Site-wide: 50,582 out of 92,330
    • In bioinformatics: 5,743 out of 8,659
  • Year to date:
    • Site-wide: 69,920 out of 92,330
  • Since beginning of last month:
    • Site-wide: 77,480 out of 92,330

Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the human AML cell line HL-60/S4

genomics more details view paper
  • Downloaded 246 times
  • Download rankings, all-time:
    • Site-wide: 63,475 out of 92,330
    • In genomics: 4,786 out of 5,828
  • Year to date:
    • Site-wide: 77,530 out of 92,330
  • Since beginning of last month:
    • Site-wide: 75,126 out of 92,330

Induced aneuploidy disrupts MCF10A acini formation and CCND1 expression

cancer biology more details view paper
  • Downloaded 159 times
  • Download rankings, all-time:
    • Site-wide: 78,269 out of 92,330
    • In cancer biology: 2,657 out of 3,264
  • Year to date:
    • Site-wide: 56,103 out of 92,330
  • Since beginning of last month:
    • Site-wide: 35,915 out of 92,330

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