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Author: Roland Eils

Rankings

  • All-time downloads: 59,138 (rank: 2,135 )
  • Categories:
    • bioinformatics: 7,313 (rank: 1,193 )
    • cancer biology: 5,389 (rank: 426 )
    • cell biology: 12,958 (rank: 180 )
    • genomics: 24,787 (rank: 354 )
    • immunology: 658 (rank: 11,579 (tie) )
    • infectious diseases: 5,434 (rank: 6,154 (tie) )
    • synthetic biology: 2,208 (rank: 600 (tie) )
    • systems biology: 391 (rank: 9,004 (tie) )

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 12,504 times
  • Download rankings, all-time:
    • Site-wide: 512
    • In cell biology: 4
  • Year to date:
    • Site-wide: 33,000
  • Since beginning of last month:
    • Site-wide: 15,790

Cross-talk between the airway epithelium and activated immune cells defines severity in COVID-19

infectious diseases more details view paper
  • Downloaded 5,139 times
  • Download rankings, all-time:
    • Site-wide: 1,681
    • In infectious diseases: 391
  • Year to date:
    • Site-wide: 5,805
  • Since beginning of last month:
    • Site-wide: 7,257

SARS-CoV-2 receptor ACE2 and TMPRSS2 are predominantly expressed in a transient secretory cell type in subsegmental bronchial branches

genomics more details view paper
  • Downloaded 4,882 times
  • Download rankings, all-time:
    • Site-wide: 1,802
    • In genomics: 194
  • Year to date:
    • Site-wide: 21,457
  • Since beginning of last month:
    • Site-wide: 12,574

Single nucleus and in situ RNA sequencing reveals cell topographies in the human pancreas

genomics more details view paper
  • Downloaded 4,392 times
  • Download rankings, all-time:
    • Site-wide: 2,107
    • In genomics: 245
  • Year to date:
    • Site-wide: 2,301
  • Since beginning of last month:
    • Site-wide: 2,441

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

genomics more details view paper
  • Downloaded 2,499 times
  • Download rankings, all-time:
    • Site-wide: 4,744
    • In genomics: 570
  • Year to date:
    • Site-wide: 99,945
  • Since beginning of last month:
    • Site-wide: 113,055

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,388 times
  • Download rankings, all-time:
    • Site-wide: 5,105
    • In genomics: 617
  • Year to date:
    • Site-wide: 118,590
  • Since beginning of last month:
    • Site-wide: 65,637

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

genomics more details view paper
  • Downloaded 2,287 times
  • Download rankings, all-time:
    • Site-wide: 5,456
    • In genomics: 652
  • Year to date:
    • Site-wide: 16,239
  • Since beginning of last month:
    • Site-wide: 35,850

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 2,137 times
  • Download rankings, all-time:
    • Site-wide: 5,989
    • In genomics: 702
  • Year to date:
    • Site-wide: 104,912
  • Since beginning of last month:
    • Site-wide: 53,564

The landscape of viral associations in human cancers

cancer biology more details view paper
  • Downloaded 1,963 times
  • Download rankings, all-time:
    • Site-wide: 6,791
    • In cancer biology: 113
  • Year to date:
    • Site-wide: 28,068
  • Since beginning of last month:
    • Site-wide: 43,551

Cell segmentation-free inference of cell types from in situ transcriptomics data

bioinformatics more details view paper
  • Downloaded 1,944 times
  • Download rankings, all-time:
    • Site-wide: 6,894
    • In bioinformatics: 866
  • Year to date:
    • Site-wide: 3,274
  • Since beginning of last month:
    • Site-wide: 5,955

pheno-seq - linking morphological features to gene expression in 3D cell culture systems

genomics more details view paper
  • Downloaded 1,786 times
  • Download rankings, all-time:
    • Site-wide: 7,798
    • In genomics: 886
  • Year to date:
    • Site-wide: 89,943
  • Since beginning of last month:
    • Site-wide: 93,889

Deciphering programs of transcriptional regulation by combined deconvolution of multiple omics layers

genomics more details view paper
  • Downloaded 1,623 times
  • Download rankings, all-time:
    • Site-wide: 9,068
    • In genomics: 1,034
  • Year to date:
    • Site-wide: 54,421
  • Since beginning of last month:
    • Site-wide: 53,714

Modeling glioblastoma invasion using human brain organoids and single-cell transcriptomics

cancer biology more details view paper
  • Downloaded 1,476 times
  • Download rankings, all-time:
    • Site-wide: 10,412
    • In cancer biology: 209
  • Year to date:
    • Site-wide: 111,210
  • Since beginning of last month:
    • Site-wide: 78,770

Genomic footprints of activated telomere maintenance mechanisms in cancer

genomics more details view paper
  • Downloaded 1,449 times
  • Download rankings, all-time:
    • Site-wide: 10,701
    • In genomics: 1,209
  • Year to date:
    • Site-wide: 57,236
  • Since beginning of last month:
    • Site-wide: 61,849

ACEseq - allele specific copy number estimation from whole genome sequencing

bioinformatics more details view paper
  • Downloaded 1,301 times
  • Download rankings, all-time:
    • Site-wide: 12,598
    • In bioinformatics: 1,581
  • Year to date:
    • Site-wide: 60,750
  • Since beginning of last month:
    • Site-wide: 24,839

Framework For Quality Assessment Of Whole Genome, Cancer Sequences

genomics more details view paper
  • Downloaded 1,068 times
  • Download rankings, all-time:
    • Site-wide: 16,965
    • In genomics: 1,780
  • Year to date:
    • Site-wide: 115,116
  • Since beginning of last month:
    • Site-wide: 93,575

Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders

bioinformatics more details view paper
  • Downloaded 1,062 times
  • Download rankings, all-time:
    • Site-wide: 17,106
    • In bioinformatics: 2,109
  • Year to date:
    • Site-wide: 11,041
  • Since beginning of last month:
    • Site-wide: 6,636

Resolving Drug Effects In Patient-Derived Cancer Cells Links Organoid Responses To Genome Alterations

cancer biology more details view paper
  • Downloaded 934 times
  • Download rankings, all-time:
    • Site-wide: 20,653
    • In cancer biology: 500
  • Year to date:
    • Site-wide: 93,393
  • Since beginning of last month:
    • Site-wide: 66,641

Cell-specific CRISPR/Cas9 activation by microRNA-dependent expression of anti-CRISPR proteins

synthetic biology more details view paper
  • Downloaded 875 times
  • Download rankings, all-time:
    • Site-wide: 22,705
    • In synthetic biology: 297
  • Year to date:
    • Site-wide: 58,989
  • Since beginning of last month:
    • Site-wide: 62,558

Web-based design and analysis tools for CRISPR base editing

bioinformatics more details view paper
  • Downloaded 846 times
  • Download rankings, all-time:
    • Site-wide: 23,819
    • In bioinformatics: 2,886
  • Year to date:
    • Site-wide: 111,529
  • Since beginning of last month:
    • Site-wide: 62,607

Computational design of anti-CRISPR proteins with improved inhibition potency and expanded specificity

synthetic biology more details view paper
  • Downloaded 724 times
  • Download rankings, all-time:
    • Site-wide: 29,588
    • In synthetic biology: 387
  • Year to date:
    • Site-wide: 58,714
  • Since beginning of last month:
    • Site-wide: 62,660

Identification and prioritisation of causal variants in human genetic disorders from exome or whole genome sequencing data

bioinformatics more details view paper
  • Downloaded 711 times
  • Download rankings, all-time:
    • Site-wide: 30,313
    • In bioinformatics: 3,496
  • Year to date:
    • Site-wide: 81,694
  • Since beginning of last month:
    • Site-wide: 110,699

Single-cell analysis of patient-derived PDAC organoids reveals cell state heterogeneity and a conserved developmental hierarchy

cancer biology more details view paper
  • Downloaded 694 times
  • Download rankings, all-time:
    • Site-wide: 31,303
    • In cancer biology: 849
  • Year to date:
    • Site-wide: 8,879
  • Since beginning of last month:
    • Site-wide: 5,618

Single-fluorescent protein reporters allow parallel quantification of NK cell-mediated granzyme and caspase activities in single target cells

immunology more details view paper
  • Downloaded 658 times
  • Download rankings, all-time:
    • Site-wide: 33,634
    • In immunology: 894
  • Year to date:
    • Site-wide: 33,205
  • Since beginning of last month:
    • Site-wide: 47,404

Impact of cancer mutational signatures on transcription factor motifs in the human genome

bioinformatics more details view paper
  • Downloaded 615 times
  • Download rankings, all-time:
    • Site-wide: 36,723
    • In bioinformatics: 4,090
  • Year to date:
    • Site-wide: 109,500
  • Since beginning of last month:
    • Site-wide: 122,049

Optogenetic control of Neisseria meningitidis Cas9 genome editing using an engineered, light-switchable anti-CRISPR protein

synthetic biology more details view paper
  • Downloaded 609 times
  • Download rankings, all-time:
    • Site-wide: 37,243
    • In synthetic biology: 479
  • Year to date:
    • Site-wide: 82,255
  • Since beginning of last month:
    • Site-wide: 41,242

Automated screening by 3D light-sheet microscopy with high spatial and temporal resolution reveals mitotic phenotypes

cell biology more details view paper
  • Downloaded 454 times
  • Download rankings, all-time:
    • Site-wide: 52,837
    • In cell biology: 2,322
  • Year to date:
    • Site-wide: 99,367
  • Since beginning of last month:
    • Site-wide: 112,229

The COVID-19 PHARMACOME: Rational Selection of Drug Repurposing Candidates from Multimodal Knowledge Harmonization

bioinformatics more details view paper
  • Downloaded 412 times
  • Download rankings, all-time:
    • Site-wide: 58,469
    • In bioinformatics: 5,885
  • Year to date:
    • Site-wide: 16,503
  • Since beginning of last month:
    • Site-wide: 19,670

Unraveling mitotic protein networks by 3D multiplexed epitope drug screening

systems biology more details view paper
  • Downloaded 391 times
  • Download rankings, all-time:
    • Site-wide: 61,680
    • In systems biology: 1,532
  • Year to date:
    • Site-wide: 100,413
  • Since beginning of last month:
    • Site-wide: 77,989

HTSlib-js: Developer toolkit for a client-side JavaScript interface for HTSlib

bioinformatics more details view paper
  • Downloaded 360 times
  • Download rankings, all-time:
    • Site-wide: 66,523
    • In bioinformatics: 6,464
  • Year to date:
    • Site-wide: 122,013
  • Since beginning of last month:
    • Site-wide: 111,487

Delayed viral clearance and exacerbated airway hyperinflammation in hypertensive COVID-19 patients

infectious diseases more details view paper
  • Downloaded 295 times
  • Download rankings, all-time:
    • Site-wide: 78,204
    • In infectious diseases: 2,924
  • Year to date:
    • Site-wide: 33,563
  • Since beginning of last month:
    • Site-wide: 13,556

Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the human AML cell line HL-60/S4

genomics more details view paper
  • Downloaded 276 times
  • Download rankings, all-time:
    • Site-wide: 82,045
    • In genomics: 5,330
  • Year to date:
    • Site-wide: 67,776
  • Since beginning of last month:
    • Site-wide: 116,852

Induced aneuploidy disrupts MCF10A acini formation and CCND1 expression

cancer biology more details view paper
  • Downloaded 189 times
  • Download rankings, all-time:
    • Site-wide: 100,502
    • In cancer biology: 3,077
  • Year to date:
    • Site-wide: 102,485
  • Since beginning of last month:
    • Site-wide: 95,967

The DNA methylation landscape of multiple myeloma shows extensive inter- and intrapatient heterogeneity that fuels transcriptomic variability

cancer biology more details view paper
  • Downloaded 133 times
  • Download rankings, all-time:
    • Site-wide: 111,252
    • In cancer biology: 3,452
  • Year to date:
    • Site-wide: 59,364
  • Since beginning of last month:
    • Site-wide: 36,044

Integrative Ranking Of Enhancer Networks Facilitates The Discovery Of Epigenetic Markers In Cancer

bioinformatics more details view paper
  • Downloaded 62 times
  • Download rankings, all-time:
    • Site-wide: 122,340
    • In bioinformatics: 9,833
  • Year to date:
    • Site-wide: 112,060
  • Since beginning of last month:
    • Site-wide: 32,935

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