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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,186 bioRxiv papers from 306,470 authors.

Author: Bo Li

Rankings

  • All-time downloads: 36,695 (rank: 483 out of 306,630)
  • Categories:
    • bioinformatics: 16,279 (rank: 129 out of 26,738)
    • cancer biology: 867 (rank: 4,119 out of 19,860)
    • developmental biology: 2,517 (rank: 317 (tie) out of 11,746)
    • genetics: 528 (rank: 16,901 (tie) out of 30,436)
    • genomics: 9,262 (rank: 1,236 out of 34,692)
    • immunology: 1,731 (rank: 760 out of 14,632)
    • microbiology: 86 (rank: 30,040 (tie) out of 31,654)
    • molecular biology: 126 (rank: 13,454 (tie) out of 14,954)
    • neuroscience: 4,999 (rank: 1,329 out of 51,754)
    • systems biology: 300 (rank: 6,483 (tie) out of 9,233)

Downloads per author, site-wide

Preprints

STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

bioinformatics more details view paper
  • Downloaded 6,262 times
  • Download rankings, all-time:
    • Site-wide: 305 out of 70,230
    • In bioinformatics: 51 out of 6,887
  • Year to date:
    • Site-wide: 1,137 out of 70,230
  • Since beginning of last month:
    • Site-wide: 2,181 out of 70,230

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

genomics more details view paper
  • Downloaded 3,522 times
  • Download rankings, all-time:
    • Site-wide: 919 out of 70,230
    • In genomics: 234 out of 4,700
  • Year to date:
    • Site-wide: 15,338 out of 70,230
  • Since beginning of last month:
    • Site-wide: 5,612 out of 70,230

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

genomics more details view paper
  • Downloaded 3,318 times
  • Download rankings, all-time:
    • Site-wide: 1,014 out of 70,230
    • In genomics: 251 out of 4,700
  • Year to date:
    • Site-wide: 120 out of 70,230
  • Since beginning of last month:
    • Site-wide: 208 out of 70,230

Evaluation of de novo transcriptome assemblies from RNA-Seq data

bioinformatics more details view paper
  • Downloaded 2,980 times
  • Download rankings, all-time:
    • Site-wide: 1,260 out of 70,230
    • In bioinformatics: 247 out of 6,887
  • Year to date:
    • Site-wide: 47,406 out of 70,230
  • Since beginning of last month:
    • Site-wide: 63,320 out of 70,230

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

developmental biology more details view paper
  • Downloaded 2,517 times
  • Download rankings, all-time:
    • Site-wide: 1,696 out of 70,230
    • In developmental biology: 22 out of 2,102
  • Year to date:
    • Site-wide: 33,583 out of 70,230
  • Since beginning of last month:
    • Site-wide: 3,169 out of 70,230

Transcriptome Deconvolution of Heterogeneous Tumor Samples with Immune Infiltration

bioinformatics more details view paper
  • Downloaded 2,131 times
  • Download rankings, all-time:
    • Site-wide: 2,292 out of 70,230
    • In bioinformatics: 459 out of 6,887
  • Year to date:
    • Site-wide: 20,839 out of 70,230
  • Since beginning of last month:
    • Site-wide: 24,633 out of 70,230

The central amygdala controls learning in the lateral amygdala

neuroscience more details view paper
  • Downloaded 1,544 times
  • Download rankings, all-time:
    • Site-wide: 3,958 out of 70,230
    • In neuroscience: 621 out of 12,633
  • Year to date:
    • Site-wide: 22,171 out of 70,230
  • Since beginning of last month:
    • Site-wide: 47,296 out of 70,230

The landscape of antigen-specific T cells in human cancers

bioinformatics more details view paper
  • Downloaded 1,432 times
  • Download rankings, all-time:
    • Site-wide: 4,519 out of 70,230
    • In bioinformatics: 874 out of 6,887
  • Year to date:
    • Site-wide: 1,979 out of 70,230
  • Since beginning of last month:
    • Site-wide: 8,846 out of 70,230

Ultrasensitive detection of TCR hypervariable region in solid-tissue RNA-seq data

bioinformatics more details view paper
  • Downloaded 1,386 times
  • Download rankings, all-time:
    • Site-wide: 4,767 out of 70,230
    • In bioinformatics: 920 out of 6,887
  • Year to date:
    • Site-wide: 59,545 out of 70,230
  • Since beginning of last month:
    • Site-wide: 41,926 out of 70,230

A Single-Cell Immune Atlas of Triple Negative Breast Cancer Reveals Novel Immune Cell Subsets

immunology more details view paper
  • Downloaded 1,163 times
  • Download rankings, all-time:
    • Site-wide: 6,374 out of 70,230
    • In immunology: 105 out of 1,805
  • Year to date:
    • Site-wide: 2,062 out of 70,230
  • Since beginning of last month:
    • Site-wide: 755 out of 70,230

Opposing contributions of GABAergic and glutamatergic ventral pallidal neurons to motivational behaviours

neuroscience more details view paper
  • Downloaded 1,038 times
  • Download rankings, all-time:
    • Site-wide: 7,677 out of 70,230
    • In neuroscience: 1,224 out of 12,633
  • Year to date:
    • Site-wide: 56 out of 70,230
  • Since beginning of last month:
    • Site-wide: 7,743 out of 70,230

Comparative analysis of sequencing technologies platforms for single-cell transcriptomics

genomics more details view paper
  • Downloaded 937 times
  • Download rankings, all-time:
    • Site-wide: 9,113 out of 70,230
    • In genomics: 1,393 out of 4,700
  • Year to date:
    • Site-wide: 42,829 out of 70,230
  • Since beginning of last month:
    • Site-wide: 43,832 out of 70,230

Prober: A general toolkit for analyzing sequencing-based 'toeprinting' assays

genomics more details view paper
  • Downloaded 898 times
  • Download rankings, all-time:
    • Site-wide: 9,707 out of 70,230
    • In genomics: 1,448 out of 4,700
  • Year to date:
    • Site-wide: 16,305 out of 70,230
  • Since beginning of last month:
    • Site-wide: 42,256 out of 70,230

Parvalbumin interneuron dysfunction in a thalamus - prefrontal cortex circuit in Disc1 deficiency mice

neuroscience more details view paper
  • Downloaded 866 times
  • Download rankings, all-time:
    • Site-wide: 10,299 out of 70,230
    • In neuroscience: 1,635 out of 12,633
  • Year to date:
    • Site-wide: 50,270 out of 70,230
  • Since beginning of last month:
    • Site-wide: 52,580 out of 70,230

An insula-central amygdala circuit for behavioral inhibition

neuroscience more details view paper
  • Downloaded 865 times
  • Download rankings, all-time:
    • Site-wide: 10,314 out of 70,230
    • In neuroscience: 1,636 out of 12,633
  • Year to date:
    • Site-wide: 22,406 out of 70,230
  • Since beginning of last month:
    • Site-wide: 38,569 out of 70,230

Population coding of valence in the basolateral amygdala

neuroscience more details view paper
  • Downloaded 686 times
  • Download rankings, all-time:
    • Site-wide: 14,542 out of 70,230
    • In neuroscience: 2,410 out of 12,633
  • Year to date:
    • Site-wide: 42,045 out of 70,230
  • Since beginning of last month:
    • Site-wide: 33,575 out of 70,230

EPIC: MHC-I epitope prediction integrating mass spectrometry derived motifs and tissue-specific expression profiles

bioinformatics more details view paper
  • Downloaded 643 times
  • Download rankings, all-time:
    • Site-wide: 15,962 out of 70,230
    • In bioinformatics: 2,475 out of 6,887
  • Year to date:
    • Site-wide: 59,039 out of 70,230
  • Since beginning of last month:
    • Site-wide: 25,223 out of 70,230

Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq

bioinformatics more details view paper
  • Downloaded 605 times
  • Download rankings, all-time:
    • Site-wide: 17,396 out of 70,230
    • In bioinformatics: 2,659 out of 6,887
  • Year to date:
    • Site-wide: 5,012 out of 70,230
  • Since beginning of last month:
    • Site-wide: 2,567 out of 70,230

RNA polymerase mapping in plants identifies enhancers enriched in causal variants

genomics more details view paper
  • Downloaded 587 times
  • Download rankings, all-time:
    • Site-wide: 18,173 out of 70,230
    • In genomics: 2,205 out of 4,700
  • Year to date:
    • Site-wide: 57,819 out of 70,230
  • Since beginning of last month:
    • Site-wide: 41,968 out of 70,230

Genetic predisposition to myeloproliferative neoplasms implicates hematopoietic stem cell biology

genetics more details view paper
  • Downloaded 528 times
  • Download rankings, all-time:
    • Site-wide: 20,926 out of 70,230
    • In genetics: 1,407 out of 3,897
  • Year to date:
    • Site-wide: 2,778 out of 70,230
  • Since beginning of last month:
    • Site-wide: 4,951 out of 70,230

DNA methylation-based immune cell deconvolution in solid tumors

bioinformatics more details view paper
  • Downloaded 464 times
  • Download rankings, all-time:
    • Site-wide: 24,513 out of 70,230
    • In bioinformatics: 3,416 out of 6,887
  • Year to date:
    • Site-wide: 50,627 out of 70,230
  • Since beginning of last month:
    • Site-wide: 14,112 out of 70,230

The common neoantigens in colorectal cancer are predicted and validated to be presented or immunogenic

immunology more details view paper
  • Downloaded 449 times
  • Download rankings, all-time:
    • Site-wide: 25,490 out of 70,230
    • In immunology: 501 out of 1,805
  • Year to date:
    • Site-wide: 5,264 out of 70,230
  • Since beginning of last month:
    • Site-wide: 12,442 out of 70,230

Identification of Cancer-associated Metabolic Vulnerabilities by Modeling Multi-objective Optimality in Metabolism

systems biology more details view paper
  • Downloaded 300 times
  • Download rankings, all-time:
    • Site-wide: 38,477 out of 70,230
    • In systems biology: 1,170 out of 1,936
  • Year to date:
    • Site-wide: 29,414 out of 70,230
  • Since beginning of last month:
    • Site-wide: 59,640 out of 70,230

Novel pipeline of high-frequency neoantigens heathy donor-based validation in breast cancer

cancer biology more details view paper
  • Downloaded 297 times
  • Download rankings, all-time:
    • Site-wide: 38,792 out of 70,230
    • In cancer biology: 1,204 out of 2,389
  • Year to date:
    • Site-wide: 28,368 out of 70,230
  • Since beginning of last month:
    • Site-wide: 10,707 out of 70,230

Molecular profiles and mutation burden analysis in Chinese patients with gastric carcinoma

cancer biology more details view paper
  • Downloaded 264 times
  • Download rankings, all-time:
    • Site-wide: 42,543 out of 70,230
    • In cancer biology: 1,330 out of 2,389
  • Year to date:
    • Site-wide: 61,078 out of 70,230
  • Since beginning of last month:
    • Site-wide: 66,126 out of 70,230

Bi-clustering based biological and clinical characterization of colorectal cancer in complementary to CMS classification

bioinformatics more details view paper
  • Downloaded 220 times
  • Download rankings, all-time:
    • Site-wide: 48,420 out of 70,230
    • In bioinformatics: 5,423 out of 6,887
  • Year to date:
    • Site-wide: 26,581 out of 70,230
  • Since beginning of last month:
    • Site-wide: 30,941 out of 70,230

Molecular profiling of lymphovascular invasive cancer cells in TNBC using G&T-seq

cancer biology more details view paper
  • Downloaded 166 times
  • Download rankings, all-time:
    • Site-wide: 56,193 out of 70,230
    • In cancer biology: 1,809 out of 2,389
  • Year to date:
    • Site-wide: 14,067 out of 70,230
  • Since beginning of last month:
    • Site-wide: 19,768 out of 70,230

Verify Hub Genes of expression profile in aortic dissection

bioinformatics more details view paper
  • Downloaded 156 times
  • Download rankings, all-time:
    • Site-wide: 57,828 out of 70,230
    • In bioinformatics: 6,109 out of 6,887
  • Year to date:
    • Site-wide: 43,253 out of 70,230
  • Since beginning of last month:
    • Site-wide: 64,815 out of 70,230

Recurrent Neoantigens in Colorectal Cancer as Potential Immunotherapy Targets

cancer biology more details view paper
  • Downloaded 140 times
  • Download rankings, all-time:
    • Site-wide: 60,129 out of 70,230
    • In cancer biology: 1,944 out of 2,389
  • Year to date:
    • Site-wide: 18,734 out of 70,230
  • Since beginning of last month:
    • Site-wide: 12,693 out of 70,230

RecO impedes RecG-SSB binding to impair the strand annealing recombination pathway in E.coli

molecular biology more details view paper
  • Downloaded 126 times
  • Download rankings, all-time:
    • Site-wide: 62,109 out of 70,230
    • In molecular biology: 1,974 out of 2,259
  • Year to date:
    • Site-wide: 30,528 out of 70,230
  • Since beginning of last month:
    • Site-wide: 43,439 out of 70,230

The co-stimulation of anti-CD28 and IL-2 enhances the sensitivity of ELISPOT assays for detection of neoantigen-specific T cells in PBMC

immunology more details view paper
  • Downloaded 119 times
  • Download rankings, all-time:
    • Site-wide: 63,090 out of 70,230
    • In immunology: 1,581 out of 1,805
  • Year to date:
    • Site-wide: 35,748 out of 70,230
  • Since beginning of last month:
    • Site-wide: 45,199 out of 70,230

Structural changes in the gut microbiome of short-term and long-term medical workers compared to normal controls

microbiology more details view paper
  • Downloaded 86 times
  • Download rankings, all-time:
    • Site-wide: 66,872 out of 70,230
    • In microbiology: 5,256 out of 5,692
  • Year to date:
    • Site-wide: 53,103 out of 70,230
  • Since beginning of last month:
    • Site-wide: 40,893 out of 70,230

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