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Author: Jesse Gillis

Rankings

  • All-time downloads: 32,958 (rank: 4,317 (tie) )
  • Categories:
    • bioinformatics: 6,985 (rank: 1,360 )
    • genetics: 538 (rank: 23,506 (tie) )
    • genomics: 3,498 (rank: 6,679 (tie) )
    • neuroscience: 21,368 (rank: 242 )
    • systems biology: 569 (rank: 7,004 (tie) )

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Preprints

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

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    • Site-wide: 1,963
    • In neuroscience: 114
  • Year to date:
    • Site-wide: 1,397
  • Since beginning of last month:
    • Site-wide: 1,743

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

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  • Downloaded 4,316 times
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    • Site-wide: 2,291
    • In neuroscience: 150
  • Year to date:
    • Site-wide: 1,436
  • Since beginning of last month:
    • Site-wide: 1,183

High-throughput mapping of long-range neuronal projection using in situ sequencing

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  • Downloaded 4,154 times
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    • Site-wide: 2,405
    • In neuroscience: 162
  • Year to date:
    • Site-wide: 19,807
  • Since beginning of last month:
    • Site-wide: 23,628

A multimodal cell census and atlas of the mammalian primary motor cortex

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  • Downloaded 3,265 times
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    • Site-wide: 3,442
    • In neuroscience: 280
  • Year to date:
    • Site-wide: 1,475
  • Since beginning of last month:
    • Site-wide: 1,840

Is it time to change the reference genome?

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  • Downloaded 2,368 times
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    • Site-wide: 5,459
    • In genomics: 639
  • Year to date:
    • Site-wide: 51,043
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    • Site-wide: 50,836

Addressing the looming identity crisis in single cell RNA-seq

bioinformatics more details view paper
  • Downloaded 1,984 times
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    • Site-wide: 7,032
    • In bioinformatics: 864
  • Year to date:
    • Site-wide: 82,284
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    • Site-wide: 61,824

Cellular Anatomy of the Mouse Primary Motor Cortex

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  • Downloaded 1,931 times
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    • Site-wide: 7,337
    • In neuroscience: 764
  • Year to date:
    • Site-wide: 2,331
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    • Site-wide: 1,952

Integrating barcoded neuroanatomy with spatial transcriptional profiling reveals cadherin correlates of projections shared across the cortex

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  • Downloaded 1,504 times
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    • Site-wide: 10,691
    • In neuroscience: 1,203
  • Year to date:
    • Site-wide: 8,480
  • Since beginning of last month:
    • Site-wide: 6,667

Transcriptional Architecture of Synaptic Communication Delineates Cortical GABAergic Neuron Identity

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  • Downloaded 1,390 times
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    • Site-wide: 12,015
    • In neuroscience: 1,385
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    • Site-wide: 29,119
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    • Site-wide: 18,035

The fractured landscape of RNA-seq alignment: The default in our STARs

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  • Downloaded 1,290 times
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    • Site-wide: 13,423
    • In bioinformatics: 1,656
  • Year to date:
    • Site-wide: 50,129
  • Since beginning of last month:
    • Site-wide: 44,642

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

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  • Downloaded 1,139 times
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    • Site-wide: 16,223
    • In bioinformatics: 1,991
  • Year to date:
    • Site-wide: 12,568
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    • Site-wide: 9,763

A limited set of transcriptional programs define major cell types

genomics more details view paper
  • Downloaded 923 times
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    • Site-wide: 22,081
    • In genomics: 2,199
  • Year to date:
    • Site-wide: 66,356
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    • Site-wide: 76,485

EGAD: Ultra-fast functional analysis of gene networks

bioinformatics more details view paper
  • Downloaded 635 times
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    • Site-wide: 37,045
    • In bioinformatics: 4,111
  • Year to date:
    • Site-wide: 97,274
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    • Site-wide: 83,316

Not by systems alone: replicability assessment of disease expression signals

systems biology more details view paper
  • Downloaded 569 times
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    • Site-wide: 42,530
    • In systems biology: 995
  • Year to date:
    • Site-wide: 50,074
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    • Site-wide: 39,614

Strength of functional signature correlates with effect size in autism

genetics more details view paper
  • Downloaded 538 times
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    • Site-wide: 45,595
    • In genetics: 2,196
  • Year to date:
    • Site-wide: 90,927
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    • Site-wide: 88,544

AuPairWise: a method to estimate RNA-seq replicability through co-expression

bioinformatics more details view paper
  • Downloaded 467 times
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    • Site-wide: 53,662
    • In bioinformatics: 5,515
  • Year to date:
    • Site-wide: 112,938
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    • Site-wide: 76,925

Virtue as the mean: Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses

bioinformatics more details view paper
  • Downloaded 425 times
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    • Site-wide: 59,343
    • In bioinformatics: 5,909
  • Year to date:
    • Site-wide: 4,663
  • Since beginning of last month:
    • Site-wide: 22,295

Using predictive specificity to determine when gene set analysis is biologically meaningful

bioinformatics more details view paper
  • Downloaded 365 times
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    • Site-wide: 68,656
    • In bioinformatics: 6,592
  • Year to date:
    • Site-wide: 97,979
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    • Site-wide: 83,394

Multiscale Co-expression in the Brain

bioinformatics more details view paper
  • Downloaded 293 times
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    • Site-wide: 81,976
    • In bioinformatics: 7,456
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    • Site-wide: 41,782
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Coexpression reveals conserved mechanisms of transcriptional cell identity

bioinformatics more details view paper
  • Downloaded 217 times
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    • Site-wide: 98,117
    • In bioinformatics: 8,478
  • Year to date:
    • Site-wide: 52,788
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    • Site-wide: 92,224

Replicability of spatial gene expression atlas data from the adult mouse brain

genomics more details view paper
  • Downloaded 207 times
  • Download rankings, all-time:
    • Site-wide: 100,309
    • In genomics: 5,979
  • Year to date:
    • Site-wide: 35,364
  • Since beginning of last month:
    • Site-wide: 26,734

CoCoCoNet: Conserved and Comparative Co-expression Across a Diverse Set of Species

bioinformatics more details view paper
  • Downloaded 170 times
  • Download rankings, all-time:
    • Site-wide: 108,140
    • In bioinformatics: 9,073
  • Year to date:
    • Site-wide: 115,262
  • Since beginning of last month:
    • Site-wide: 91,850

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