Author: Jesse Gillis

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Preprints

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

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Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

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  • Site-wide: 2,291
  • In neuroscience: 150
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High-throughput mapping of long-range neuronal projection using in situ sequencing

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  • In neuroscience: 162
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A multimodal cell census and atlas of the mammalian primary motor cortex

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  • Site-wide: 3,442
  • In neuroscience: 280
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  • Site-wide: 1,475
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Is it time to change the reference genome?

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  • In genomics: 639
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Addressing the looming identity crisis in single cell RNA-seq

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  • Site-wide: 7,032
  • In bioinformatics: 864
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Cellular Anatomy of the Mouse Primary Motor Cortex

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  • Site-wide: 7,337
  • In neuroscience: 764
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  • Site-wide: 2,331
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Integrating barcoded neuroanatomy with spatial transcriptional profiling reveals cadherin correlates of projections shared across the cortex

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  • Site-wide: 10,691
  • In neuroscience: 1,203
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  • Site-wide: 8,480
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  • Site-wide: 6,667

Transcriptional Architecture of Synaptic Communication Delineates Cortical GABAergic Neuron Identity

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  • In neuroscience: 1,385
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The fractured landscape of RNA-seq alignment: The default in our STARs

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  • Site-wide: 13,423
  • In bioinformatics: 1,656
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Improving replicability in single-cell RNA-Seq cell type discovery with Dune

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  • In bioinformatics: 1,991
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A limited set of transcriptional programs define major cell types

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  • In genomics: 2,199
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EGAD: Ultra-fast functional analysis of gene networks

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  • In bioinformatics: 4,111
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  • Site-wide: 97,274
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  • Site-wide: 83,316

Not by systems alone: replicability assessment of disease expression signals

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  • Site-wide: 42,530
  • In systems biology: 995
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Strength of functional signature correlates with effect size in autism

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AuPairWise: a method to estimate RNA-seq replicability through co-expression

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  • Site-wide: 53,662
  • In bioinformatics: 5,515
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Virtue as the mean: Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses

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  • Site-wide: 59,343
  • In bioinformatics: 5,909
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Using predictive specificity to determine when gene set analysis is biologically meaningful

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  • Site-wide: 68,656
  • In bioinformatics: 6,592
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  • Site-wide: 97,979
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Multiscale Co-expression in the Brain

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  • Site-wide: 81,976
  • In bioinformatics: 7,456
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Coexpression reveals conserved mechanisms of transcriptional cell identity

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  • Site-wide: 98,117
  • In bioinformatics: 8,478
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  • Site-wide: 92,224

Replicability of spatial gene expression atlas data from the adult mouse brain

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  • Site-wide: 100,309
  • In genomics: 5,979
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CoCoCoNet: Conserved and Comparative Co-expression Across a Diverse Set of Species

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  • Site-wide: 108,140
  • In bioinformatics: 9,073
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