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Author: Barbara E Engelhardt

Rankings

  • All-time downloads: 33,139 (rank: 1,291 out of 384,681)
  • Categories:
    • bioinformatics: 4,237 (rank: 2,171 out of 32,919)
    • genetics: 6,420 (rank: 2,721 (tie) out of 35,563)
    • genomics: 21,703 (rank: 408 out of 40,923)
    • systems biology: 779 (rank: 4,035 (tie) out of 11,302)

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Preprints

The GTEx Consortium atlas of genetic regulatory effects across human tissues

genetics more details view paper
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  • Download rankings, all-time:
    • Site-wide: 495 out of 89,828
    • In genetics: 40 out of 4,635
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    • Site-wide: 426 out of 89,828
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    • Site-wide: 521 out of 89,828

Local genetic effects on gene expression across 44 human tissues

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    • Site-wide: 982 out of 89,828
    • In genomics: 211 out of 5,712
  • Year to date:
    • Site-wide: 42,176 out of 89,828
  • Since beginning of last month:
    • Site-wide: 83,019 out of 89,828

Co-expression networks reveal the tissue-specific regulation of transcription and splicing

genomics more details view paper
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    • Site-wide: 1,334 out of 89,828
    • In genomics: 288 out of 5,712
  • Year to date:
    • Site-wide: 2,430 out of 89,828
  • Since beginning of last month:
    • Site-wide: 3,582 out of 89,828

Distant regulatory effects of genetic variation in multiple human tissues

genomics more details view paper
  • Downloaded 2,665 times
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    • Site-wide: 2,271 out of 89,828
    • In genomics: 437 out of 5,712
  • Year to date:
    • Site-wide: 29,412 out of 89,828
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    • Site-wide: 43,371 out of 89,828

Joint analysis of gene expression levels and histological images identifies genes associated with tissue morphology

genomics more details view paper
  • Downloaded 2,587 times
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    • Site-wide: 2,398 out of 89,828
    • In genomics: 454 out of 5,712
  • Year to date:
    • Site-wide: 3,375 out of 89,828
  • Since beginning of last month:
    • Site-wide: 4,105 out of 89,828

Optimal gene selection for cell type discrimination in single cell analyses

genomics more details view paper
  • Downloaded 2,259 times
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    • Site-wide: 3,004 out of 89,828
    • In genomics: 564 out of 5,712
  • Year to date:
    • Site-wide: 5,496 out of 89,828
  • Since beginning of last month:
    • Site-wide: 5,859 out of 89,828

Clustering gene expression time series data using an infinite Gaussian process mixture model

bioinformatics more details view paper
  • Downloaded 2,214 times
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    • Site-wide: 3,110 out of 89,828
    • In bioinformatics: 555 out of 8,470
  • Year to date:
    • Site-wide: 12,198 out of 89,828
  • Since beginning of last month:
    • Site-wide: 9,850 out of 89,828

netNMF-sc: Leveraging gene-gene interactions for imputation and dimensionality reduction in single-cell expression analysis

genomics more details view paper
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    • Site-wide: 3,555 out of 89,828
    • In genomics: 642 out of 5,712
  • Year to date:
    • Site-wide: 6,511 out of 89,828
  • Since beginning of last month:
    • Site-wide: 6,926 out of 89,828

A robust nonlinear low-dimensional manifold for single cell RNA-seq data

genomics more details view paper
  • Downloaded 1,593 times
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    • Site-wide: 5,338 out of 89,828
    • In genomics: 886 out of 5,712
  • Year to date:
    • Site-wide: 9,871 out of 89,828
  • Since beginning of last month:
    • Site-wide: 20,166 out of 89,828

Many long intergenic non-coding RNAs distally regulate mRNA gene expression levels

genomics more details view paper
  • Downloaded 1,555 times
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    • Site-wide: 5,582 out of 89,828
    • In genomics: 926 out of 5,712
  • Year to date:
    • Site-wide: 50,933 out of 89,828
  • Since beginning of last month:
    • Site-wide: 43,447 out of 89,828

Causal Network Inference from Gene Transcriptional Time Series Response to Glucocorticoids

bioinformatics more details view paper
  • Downloaded 1,106 times
  • Download rankings, all-time:
    • Site-wide: 9,818 out of 89,828
    • In bioinformatics: 1,616 out of 8,470
  • Year to date:
    • Site-wide: 5,684 out of 89,828
  • Since beginning of last month:
    • Site-wide: 4,754 out of 89,828

GT-TS: Experimental design for maximizing cell type discovery in single-cell data

genomics more details view paper
  • Downloaded 1,075 times
  • Download rankings, all-time:
    • Site-wide: 10,303 out of 89,828
    • In genomics: 1,497 out of 5,712
  • Year to date:
    • Site-wide: 34,081 out of 89,828
  • Since beginning of last month:
    • Site-wide: 25,732 out of 89,828

A Bayesian nonparametric semi-supervised model for integration of multiple single-cell experiments

bioinformatics more details view paper
  • Downloaded 917 times
  • Download rankings, all-time:
    • Site-wide: 13,249 out of 89,828
    • In bioinformatics: 2,085 out of 8,470
  • Year to date:
    • Site-wide: 1,703 out of 89,828
  • Since beginning of last month:
    • Site-wide: 17,303 out of 89,828

Detecting differential growth of microbial populations with Gaussian process regression

systems biology more details view paper
  • Downloaded 779 times
  • Download rankings, all-time:
    • Site-wide: 17,106 out of 89,828
    • In systems biology: 473 out of 2,314
  • Year to date:
    • Site-wide: 65,780 out of 89,828
  • Since beginning of last month:
    • Site-wide: 57,959 out of 89,828

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