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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,900 bioRxiv papers from 321,596 authors.

Author: David Haussler

Rankings

  • All-time downloads: 46,666 (rank: 379 out of 321,368)
  • Categories:
    • bioinformatics: 28,679 (rank: 71 out of 27,839)
    • cancer biology: 3,956 (rank: 364 (tie) out of 21,195)
    • clinical trials: 804 (rank: 264 (tie) out of 1,037)
    • developmental biology: 1,786 (rank: 691 (tie) out of 12,384)
    • evolutionary biology: 393 (rank: 10,156 (tie) out of 17,050)
    • genomics: 8,204 (rank: 1,553 out of 35,799)
    • neuroscience: 2,844 (rank: 3,868 (tie) out of 54,280)

Downloads per author, site-wide

Preprints

Genome Graphs

bioinformatics more details view paper
  • Downloaded 7,980 times
  • Download rankings, all-time:
    • Site-wide: 226 out of 73,834
    • In bioinformatics: 33 out of 7,182
  • Year to date:
    • Site-wide: 3,824 out of 73,834
  • Since beginning of last month:
    • Site-wide: 3,824 out of 73,834

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
  • Downloaded 6,049 times
  • Download rankings, all-time:
    • Site-wide: 364 out of 73,834
    • In bioinformatics: 66 out of 7,182
  • Year to date:
    • Site-wide: 227 out of 73,834
  • Since beginning of last month:
    • Site-wide: 227 out of 73,834

Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

bioinformatics more details view paper
  • Downloaded 5,998 times
  • Download rankings, all-time:
    • Site-wide: 372 out of 73,834
    • In bioinformatics: 70 out of 7,182
  • Year to date:
    • Site-wide: 7,129 out of 73,834
  • Since beginning of last month:
    • Site-wide: 7,121 out of 73,834

The UCSC Xena platform for public and private cancer genomics data visualization and interpretation

cancer biology more details view paper
  • Downloaded 3,956 times
  • Download rankings, all-time:
    • Site-wide: 793 out of 73,834
    • In cancer biology: 24 out of 2,531
  • Year to date:
    • Site-wide: 1,078 out of 73,834
  • Since beginning of last month:
    • Site-wide: 1,078 out of 73,834

Alignathon: A competitive assessment of whole genome alignment methods.

bioinformatics more details view paper
  • Downloaded 3,162 times
  • Download rankings, all-time:
    • Site-wide: 1,210 out of 73,834
    • In bioinformatics: 236 out of 7,182
  • Year to date:
    • Site-wide: 34,705 out of 73,834
  • Since beginning of last month:
    • Site-wide: 34,705 out of 73,834

Linear Assembly of a Human Y Centromere

genomics more details view paper
  • Downloaded 2,584 times
  • Download rankings, all-time:
    • Site-wide: 1,719 out of 73,834
    • In genomics: 375 out of 4,892
  • Year to date:
    • Site-wide: 41,402 out of 73,834
  • Since beginning of last month:
    • Site-wide: 41,403 out of 73,834

Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis

neuroscience more details view paper
  • Downloaded 1,969 times
  • Download rankings, all-time:
    • Site-wide: 2,808 out of 73,834
    • In neuroscience: 421 out of 13,276
  • Year to date:
    • Site-wide: 24,003 out of 73,834
  • Since beginning of last month:
    • Site-wide: 24,003 out of 73,834

Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era

genomics more details view paper
  • Downloaded 1,879 times
  • Download rankings, all-time:
    • Site-wide: 3,034 out of 73,834
    • In genomics: 595 out of 4,892
  • Year to date:
    • Site-wide: 649 out of 73,834
  • Since beginning of last month:
    • Site-wide: 649 out of 73,834

A user’s guide to the online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)

bioinformatics more details view paper
  • Downloaded 1,806 times
  • Download rankings, all-time:
    • Site-wide: 3,251 out of 73,834
    • In bioinformatics: 639 out of 7,182
  • Year to date:
    • Site-wide: 2,526 out of 73,834
  • Since beginning of last month:
    • Site-wide: 2,526 out of 73,834

Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution

developmental biology more details view paper
  • Downloaded 1,786 times
  • Download rankings, all-time:
    • Site-wide: 3,311 out of 73,834
    • In developmental biology: 52 out of 2,215
  • Year to date:
    • Site-wide: 3,468 out of 73,834
  • Since beginning of last month:
    • Site-wide: 3,468 out of 73,834

Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotation

bioinformatics more details view paper
  • Downloaded 1,590 times
  • Download rankings, all-time:
    • Site-wide: 4,042 out of 73,834
    • In bioinformatics: 795 out of 7,182
  • Year to date:
    • Site-wide: 14,472 out of 73,834
  • Since beginning of last month:
    • Site-wide: 14,472 out of 73,834

Genomic profiling of childhood tumor patient-derived xenograft models to enable rational clinical trial design

genomics more details view paper
  • Downloaded 1,334 times
  • Download rankings, all-time:
    • Site-wide: 5,423 out of 73,834
    • In genomics: 930 out of 4,892
  • Year to date:
    • Site-wide: 6,174 out of 73,834
  • Since beginning of last month:
    • Site-wide: 6,174 out of 73,834

The UCSC Genome Browser database: 2016 update

genomics more details view paper
  • Downloaded 1,273 times
  • Download rankings, all-time:
    • Site-wide: 5,859 out of 73,834
    • In genomics: 980 out of 4,892
  • Year to date:
    • Site-wide: 51,419 out of 73,834
  • Since beginning of last month:
    • Site-wide: 51,419 out of 73,834

A Flow Procedure for the Linearization of Genome Sequence Graphs.

bioinformatics more details view paper
  • Downloaded 921 times
  • Download rankings, all-time:
    • Site-wide: 10,005 out of 73,834
    • In bioinformatics: 1,697 out of 7,182
  • Year to date:
    • Site-wide: 50,159 out of 73,834
  • Since beginning of last month:
    • Site-wide: 50,160 out of 73,834

The UCSC Repeat Browser allows discovery and visualization of evolutionary conflict across repeat families

genomics more details view paper
  • Downloaded 915 times
  • Download rankings, all-time:
    • Site-wide: 10,108 out of 73,834
    • In genomics: 1,497 out of 4,892
  • Year to date:
    • Site-wide: 9,825 out of 73,834
  • Since beginning of last month:
    • Site-wide: 9,825 out of 73,834

Structurally conserved primate lncRNAs are transiently expressed during human cortical differentiation and influence cell type specific genes

neuroscience more details view paper
  • Downloaded 875 times
  • Download rankings, all-time:
    • Site-wide: 10,855 out of 73,834
    • In neuroscience: 1,735 out of 13,276
  • Year to date:
    • Site-wide: 50,317 out of 73,834
  • Since beginning of last month:
    • Site-wide: 50,318 out of 73,834

Cis-Compound Mutations are Prevalent in Triple Negative Breast Cancer and Can Drive Tumor Progression

clinical trials more details view paper
  • Downloaded 804 times
  • Download rankings, all-time:
    • Site-wide: 12,367 out of 73,834
    • In clinical trials: 22 out of 99
  • Year to date:
    • Site-wide: 52,411 out of 73,834
  • Since beginning of last month:
    • Site-wide: 52,412 out of 73,834

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

bioinformatics more details view paper
  • Downloaded 780 times
  • Download rankings, all-time:
    • Site-wide: 12,920 out of 73,834
    • In bioinformatics: 2,103 out of 7,182
  • Year to date:
    • Site-wide: 48,346 out of 73,834
  • Since beginning of last month:
    • Site-wide: 48,347 out of 73,834

KRAB Zinc Finger Proteins coordinate across evolutionary time scales to battle retroelements

evolutionary biology more details view paper
  • Downloaded 393 times
  • Download rankings, all-time:
    • Site-wide: 31,928 out of 73,834
    • In evolutionary biology: 2,332 out of 4,765
  • Year to date:
    • Site-wide: 26,552 out of 73,834
  • Since beginning of last month:
    • Site-wide: 26,552 out of 73,834

ProTECT: Prediction of T-cell Epitopes for Cancer Therapy

bioinformatics more details view paper
  • Downloaded 393 times
  • Download rankings, all-time:
    • Site-wide: 31,868 out of 73,834
    • In bioinformatics: 4,111 out of 7,182
  • Year to date:
    • Site-wide: 22,240 out of 73,834
  • Since beginning of last month:
    • Site-wide: 22,240 out of 73,834

Framework for determining accuracy of RNA sequencing data for gene expression profiling of single samples

genomics more details view paper
  • Downloaded 219 times
  • Download rankings, all-time:
    • Site-wide: 52,135 out of 73,834
    • In genomics: 4,140 out of 4,892
  • Year to date:
    • Site-wide: 29,310 out of 73,834
  • Since beginning of last month:
    • Site-wide: 29,310 out of 73,834

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