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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 60,233 bioRxiv papers from 267,795 authors.

Author: David Haussler

Rankings

  • All-time downloads: 38,579 (rank: 379 out of 267,795)
  • Categories:
    • bioinformatics: 24,323 (rank: 64 out of 23,889)
    • cancer biology: 2,995 (rank: 427 (tie) out of 16,247)
    • clinical trials: 721 (rank: 191 (tie) out of 1,031)
    • developmental biology: 1,312 (rank: 868 (tie) out of 10,014)
    • evolutionary biology: 307 (rank: 9,840 (tie) out of 14,799)
    • genomics: 6,250 (rank: 1,785 out of 31,251)
    • neuroscience: 2,671 (rank: 2,844 (tie) out of 43,944)

Downloads per author, site-wide

Preprints

Genome Graphs

bioinformatics more details view paper
  • Downloaded 7,491 times
  • Download rankings, all-time:
    • Site-wide: 178 out of 60,233
    • In bioinformatics: 32 out of 6,078
  • Year to date:
    • Site-wide: 964 out of 60,233
  • Since beginning of last month:
    • Site-wide: 2,369 out of 60,233

Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

bioinformatics more details view paper
  • Downloaded 5,681 times
  • Download rankings, all-time:
    • Site-wide: 313 out of 60,233
    • In bioinformatics: 59 out of 6,078
  • Year to date:
    • Site-wide: 3,117 out of 60,233
  • Since beginning of last month:
    • Site-wide: 3,563 out of 60,233

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
  • Downloaded 3,245 times
  • Download rankings, all-time:
    • Site-wide: 897 out of 60,233
    • In bioinformatics: 180 out of 6,078
  • Year to date:
    • Site-wide: 131 out of 60,233
  • Since beginning of last month:
    • Site-wide: 16 out of 60,233

Alignathon: A competitive assessment of whole genome alignment methods.

bioinformatics more details view paper
  • Downloaded 3,081 times
  • Download rankings, all-time:
    • Site-wide: 985 out of 60,233
    • In bioinformatics: 202 out of 6,078
  • Year to date:
    • Site-wide: 21,379 out of 60,233
  • Since beginning of last month:
    • Site-wide: 30,001 out of 60,233

The UCSC Xena platform for public and private cancer genomics data visualization and interpretation

cancer biology more details view paper
  • Downloaded 2,995 times
  • Download rankings, all-time:
    • Site-wide: 1,036 out of 60,233
    • In cancer biology: 28 out of 1,975
  • Year to date:
    • Site-wide: 375 out of 60,233
  • Since beginning of last month:
    • Site-wide: 529 out of 60,233

Linear Assembly of a Human Y Centromere

genomics more details view paper
  • Downloaded 2,489 times
  • Download rankings, all-time:
    • Site-wide: 1,446 out of 60,233
    • In genomics: 335 out of 4,181
  • Year to date:
    • Site-wide: 28,272 out of 60,233
  • Since beginning of last month:
    • Site-wide: 36,600 out of 60,233

Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis

neuroscience more details view paper
  • Downloaded 1,854 times
  • Download rankings, all-time:
    • Site-wide: 2,446 out of 60,233
    • In neuroscience: 355 out of 10,661
  • Year to date:
    • Site-wide: 7,504 out of 60,233
  • Since beginning of last month:
    • Site-wide: 15,431 out of 60,233

Online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)

bioinformatics more details view paper
  • Downloaded 1,498 times
  • Download rankings, all-time:
    • Site-wide: 3,503 out of 60,233
    • In bioinformatics: 703 out of 6,078
  • Year to date:
    • Site-wide: 6,185 out of 60,233
  • Since beginning of last month:
    • Site-wide: 2,640 out of 60,233

Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotation

bioinformatics more details view paper
  • Downloaded 1,448 times
  • Download rankings, all-time:
    • Site-wide: 3,725 out of 60,233
    • In bioinformatics: 750 out of 6,078
  • Year to date:
    • Site-wide: 5,829 out of 60,233
  • Since beginning of last month:
    • Site-wide: 26,957 out of 60,233

Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution

developmental biology more details view paper
  • Downloaded 1,312 times
  • Download rankings, all-time:
    • Site-wide: 4,363 out of 60,233
    • In developmental biology: 84 out of 1,790
  • Year to date:
    • Site-wide: 1,045 out of 60,233
  • Since beginning of last month:
    • Site-wide: 1,788 out of 60,233

The UCSC Genome Browser database: 2016 update

genomics more details view paper
  • Downloaded 1,226 times
  • Download rankings, all-time:
    • Site-wide: 4,860 out of 60,233
    • In genomics: 853 out of 4,181
  • Year to date:
    • Site-wide: 55,386 out of 60,233
  • Since beginning of last month:
    • Site-wide: 39,818 out of 60,233

Genomic profiling of childhood tumor patient-derived xenograft models to enable rational clinical trial design

genomics more details view paper
  • Downloaded 999 times
  • Download rankings, all-time:
    • Site-wide: 6,846 out of 60,233
    • In genomics: 1,117 out of 4,181
  • Year to date:
    • Site-wide: 1,308 out of 60,233
  • Since beginning of last month:
    • Site-wide: 2,690 out of 60,233

A Flow Procedure for the Linearization of Genome Sequence Graphs.

bioinformatics more details view paper
  • Downloaded 862 times
  • Download rankings, all-time:
    • Site-wide: 8,636 out of 60,233
    • In bioinformatics: 1,520 out of 6,078
  • Year to date:
    • Site-wide: 39,218 out of 60,233
  • Since beginning of last month:
    • Site-wide: 44,539 out of 60,233

Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era

genomics more details view paper
  • Downloaded 840 times
  • Download rankings, all-time:
    • Site-wide: 9,000 out of 60,233
    • In genomics: 1,372 out of 4,181
  • Year to date:
    • Site-wide: 1,768 out of 60,233
  • Since beginning of last month:
    • Site-wide: 89 out of 60,233

Structurally conserved primate lncRNAs are transiently expressed during human cortical differentiation and influence cell type specific genes

neuroscience more details view paper
  • Downloaded 817 times
  • Download rankings, all-time:
    • Site-wide: 9,380 out of 60,233
    • In neuroscience: 1,452 out of 10,661
  • Year to date:
    • Site-wide: 17,028 out of 60,233
  • Since beginning of last month:
    • Site-wide: 38,366 out of 60,233

Cis-Compound Mutations are Prevalent in Triple Negative Breast Cancer and Can Drive Tumor Progression

clinical trials more details view paper
  • Downloaded 721 times
  • Download rankings, all-time:
    • Site-wide: 11,221 out of 60,233
    • In clinical trials: 16 out of 99
  • Year to date:
    • Site-wide: 20,259 out of 60,233
  • Since beginning of last month:
    • Site-wide: 26,564 out of 60,233

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

bioinformatics more details view paper
  • Downloaded 717 times
  • Download rankings, all-time:
    • Site-wide: 11,324 out of 60,233
    • In bioinformatics: 1,906 out of 6,078
  • Year to date:
    • Site-wide: 26,383 out of 60,233
  • Since beginning of last month:
    • Site-wide: 48,594 out of 60,233

The UCSC Repeat Browser allows discovery and visualization of evolutionary conflict across repeat families

genomics more details view paper
  • Downloaded 575 times
  • Download rankings, all-time:
    • Site-wide: 15,412 out of 60,233
    • In genomics: 1,962 out of 4,181
  • Year to date:
    • Site-wide: 8,597 out of 60,233
  • Since beginning of last month:
    • Site-wide: 8,780 out of 60,233

KRAB Zinc Finger Proteins coordinate across evolutionary time scales to battle retroelements

evolutionary biology more details view paper
  • Downloaded 307 times
  • Download rankings, all-time:
    • Site-wide: 30,931 out of 60,233
    • In evolutionary biology: 2,363 out of 4,111
  • Year to date:
    • Site-wide: 21,982 out of 60,233
  • Since beginning of last month:
    • Site-wide: 13,052 out of 60,233

ProTECT: Prediction of T-cell Epitopes for Cancer Therapy

bioinformatics more details view paper
  • Downloaded 300 times
  • Download rankings, all-time:
    • Site-wide: 31,590 out of 60,233
    • In bioinformatics: 4,061 out of 6,078
  • Year to date:
    • Site-wide: 10,000 out of 60,233
  • Since beginning of last month:
    • Site-wide: 17,572 out of 60,233

Framework for determining accuracy of RNA sequencing data for gene expression profiling of single samples

genomics more details view paper
  • Downloaded 121 times
  • Download rankings, all-time:
    • Site-wide: 52,509 out of 60,233
    • In genomics: 3,946 out of 4,181
  • Year to date:
    • Site-wide: 31,186 out of 60,233
  • Since beginning of last month:
    • Site-wide: 7,712 out of 60,233

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