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Author: Franziska Singer

Rankings

  • All-time downloads: 33,036 (rank: 6,781 )
  • Categories:
    • bioinformatics: 8,047 (rank: 1,515 )
    • cancer biology: 13,059 (rank: 180 )
    • cell biology: 1,226 (rank: 9,183 (tie) )
    • epidemiology: 1,100 (rank: 12,159 (tie) )
    • evolutionary biology: 1,787 (rank: 4,120 (tie) )
    • genomics: 1,674 (rank: 16,803 (tie) )
    • hiv aids: 540 (rank: 427 (tie) )
    • microbiology: 1,801 (rank: 10,682 (tie) )
    • oncology: 3,018 (rank: 95 (tie) )
    • systems biology: 784 (rank: 7,143 (tie) )

Downloads per author, site-wide

Preprints

Clonal Evolution of Acute Myeloid Leukemia Revealed by High-Throughput Single-Cell Genomics

cancer biology more details view paper
  • Downloaded 3,253 times
  • Download rankings, all-time:
    • Site-wide: 5,128
    • In cancer biology: 73
  • Year to date:
    • Site-wide: 67,273
  • Since beginning of last month:
    • Site-wide: 128,722

The Tumor Profiler Study: Integrated, multi-omic, functional tumor profiling for clinical decision support

oncology more details view paper
  • Downloaded 3,018 times
  • Download rankings, all-time:
    • Site-wide: 5,721
    • In oncology: 6
  • Year to date:
    • Site-wide: 7,364
  • Since beginning of last month:
    • Site-wide: 11,349

Spatial structure governs the mode of tumour evolution

cancer biology more details view paper
  • Downloaded 2,211 times
  • Download rankings, all-time:
    • Site-wide: 8,998
    • In cancer biology: 142
  • Year to date:
    • Site-wide: 35,390
  • Since beginning of last month:
    • Site-wide: 21,677

ModulOmics: Integrating Multi-Omics Data to Identify Cancer Driver Modules

cancer biology more details view paper
  • Downloaded 2,185 times
  • Download rankings, all-time:
    • Site-wide: 9,139
    • In cancer biology: 148
  • Year to date:
    • Site-wide: 27,446
  • Since beginning of last month:
    • Site-wide: 68,549

High-dimensional microbiome interactions shape host fitness

microbiology more details view paper
  • Downloaded 1,801 times
  • Download rankings, all-time:
    • Site-wide: 12,190
    • In microbiology: 714
  • Year to date:
    • Site-wide: 125,448
  • Since beginning of last month:
    • Site-wide: 68,083

Single-cell copy number calling and event history reconstruction

cancer biology more details view paper
  • Downloaded 1,510 times
  • Download rankings, all-time:
    • Site-wide: 15,906
    • In cancer biology: 338
  • Year to date:
    • Site-wide: 11,410
  • Since beginning of last month:
    • Site-wide: 12,109

Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

bioinformatics more details view paper
  • Downloaded 1,294 times
  • Download rankings, all-time:
    • Site-wide: 20,085
    • In bioinformatics: 2,241
  • Year to date:
    • Site-wide: 111,493
  • Since beginning of last month:
    • Site-wide: 144,197

Context-dependent deposition and regulation of mRNAs in P-bodies

cell biology more details view paper
  • Downloaded 1,226 times
  • Download rankings, all-time:
    • Site-wide: 21,814
    • In cell biology: 719
  • Year to date:
    • Site-wide: 82,559
  • Since beginning of last month:
    • Site-wide: 97,584

V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput sequencing data

bioinformatics more details view paper
  • Downloaded 1,155 times
  • Download rankings, all-time:
    • Site-wide: 23,909
    • In bioinformatics: 2,654
  • Year to date:
    • Site-wide: 71,430
  • Since beginning of last month:
    • Site-wide: 43,339

A statistical test on single-cell data reveals widespread recurrent mutations in tumor evolution

cancer biology more details view paper
  • Downloaded 1,127 times
  • Download rankings, all-time:
    • Site-wide: 24,815
    • In cancer biology: 614
  • Year to date:
    • Site-wide: 117,317
  • Since beginning of last month:
    • Site-wide: 100,010

Quantifying SARS-CoV-2 spread in Switzerland based on genomic sequencing data

epidemiology more details view paper
  • Downloaded 1,100 times
  • Download rankings, all-time:
    • Site-wide: 25,752
    • In epidemiology: 1,544
  • Year to date:
    • Site-wide: 75,168
  • Since beginning of last month:
    • Site-wide: 42,596

SCIΦ: Single-cell mutation identification via phylogenetic inference

bioinformatics more details view paper
  • Downloaded 1,083 times
  • Download rankings, all-time:
    • Site-wide: 26,370
    • In bioinformatics: 2,902
  • Year to date:
    • Site-wide: 116,093
  • Since beginning of last month:
    • Site-wide: 117,054

Within-patient genetic diversity of SARS-CoV-2

genomics more details view paper
  • Downloaded 1,070 times
  • Download rankings, all-time:
    • Site-wide: 26,846
    • In genomics: 2,374
  • Year to date:
    • Site-wide: 42,268
  • Since beginning of last month:
    • Site-wide: 32,645

Bayesian non-parametric clustering of single-cell mutation profiles

bioinformatics more details view paper
  • Downloaded 1,032 times
  • Download rankings, all-time:
    • Site-wide: 28,316
    • In bioinformatics: 3,103
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 84,658

Inferring Genetic Interactions From Comparative Fitness Data

evolutionary biology more details view paper
  • Downloaded 831 times
  • Download rankings, all-time:
    • Site-wide: 38,958
    • In evolutionary biology: 1,693
  • Year to date:
    • Site-wide: 34,115
  • Since beginning of last month:
    • Site-wide: 155,631

Mutational interactions define novel cancer subgroups

cancer biology more details view paper
  • Downloaded 811 times
  • Download rankings, all-time:
    • Site-wide: 40,316
    • In cancer biology: 1,093
  • Year to date:
    • Site-wide: 79,153
  • Since beginning of last month:
    • Site-wide: 120,151

Single cell network analysis with a mixture of Nested Effects Models

systems biology more details view paper
  • Downloaded 784 times
  • Download rankings, all-time:
    • Site-wide: 42,346
    • In systems biology: 883
  • Year to date:
    • Site-wide: 103,607
  • Since beginning of last month:
    • Site-wide: 163,296

Tree inference for single-cell data

cancer biology more details view paper
  • Downloaded 737 times
  • Download rankings, all-time:
    • Site-wide: 46,234
    • In cancer biology: 1,278
  • Year to date:
    • Site-wide: 77,127
  • Since beginning of last month:
    • Site-wide: 142,970

Discovery of synthetic lethal interactions from large-scale pan-cancer perturbation screens

bioinformatics more details view paper
  • Downloaded 681 times
  • Download rankings, all-time:
    • Site-wide: 51,552
    • In bioinformatics: 5,172
  • Year to date:
    • Site-wide: 112,377
  • Since beginning of last month:
    • Site-wide: 56,528

Structured hierarchical models for probabilistic inference from perturbation screening data

bioinformatics more details view paper
  • Downloaded 679 times
  • Download rankings, all-time:
    • Site-wide: 51,764
    • In bioinformatics: 5,184
  • Year to date:
    • Site-wide: 78,336
  • Since beginning of last month:
    • Site-wide: 55,458

GATA3 and MDM2 are synthetic lethal in estrogen receptor-positive breast cancers

cancer biology more details view paper
  • Downloaded 674 times
  • Download rankings, all-time:
    • Site-wide: 52,280
    • In cancer biology: 1,483
  • Year to date:
    • Site-wide: 65,975
  • Since beginning of last month:
    • Site-wide: 34,909

Systematic Identification of Novel Cancer Genes through Analysis of Deep shRNA Perturbation Screens

genomics more details view paper
  • Downloaded 604 times
  • Download rankings, all-time:
    • Site-wide: 60,399
    • In genomics: 4,342
  • Year to date:
    • Site-wide: 82,020
  • Since beginning of last month:
    • Site-wide: 111,111

Host genomics of the HIV-1 reservoir size and its decay rate during suppressive antiretroviral treatment

hiv aids more details view paper
  • Downloaded 540 times
  • Download rankings, all-time:
    • Site-wide: 69,344
    • In hiv aids: 35
  • Year to date:
    • Site-wide: 41,896
  • Since beginning of last month:
    • Site-wide: 35,594

The geometry of partial fitness orders and an efficient method for detecting genetic interactions

evolutionary biology more details view paper
  • Downloaded 533 times
  • Download rankings, all-time:
    • Site-wide: 70,473
    • In evolutionary biology: 3,452
  • Year to date:
    • Site-wide: 125,361
  • Since beginning of last month:
    • Site-wide: 148,191

scAmpi - A versatile pipeline for single-cell RNA-seq analysis from basics to clinics

bioinformatics more details view paper
  • Downloaded 485 times
  • Download rankings, all-time:
    • Site-wide: 78,616
    • In bioinformatics: 7,167
  • Year to date:
    • Site-wide: 89,665
  • Since beginning of last month:
    • Site-wide: 31,973

Latent epistatic interaction model identifies loci associated with human working memory

bioinformatics more details view paper
  • Downloaded 446 times
  • Download rankings, all-time:
    • Site-wide: 86,121
    • In bioinformatics: 7,682
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 162,551

A stochastic model of metastatic bottleneck predicts patient outcome and therapy response

cancer biology more details view paper
  • Downloaded 383 times
  • Download rankings, all-time:
    • Site-wide: 99,769
    • In cancer biology: 2,980
  • Year to date:
    • Site-wide: 115,356
  • Since beginning of last month:
    • Site-wide: 120,162

The Bourque Distances for Mutation Trees of Cancers

bioinformatics more details view paper
  • Downloaded 376 times
  • Download rankings, all-time:
    • Site-wide: 101,484
    • In bioinformatics: 8,657
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 111,116

Improved pathway reconstruction from RNA interference screens by exploiting off-target effects

bioinformatics more details view paper
  • Downloaded 335 times
  • Download rankings, all-time:
    • Site-wide: 111,640
    • In bioinformatics: 9,260
  • Year to date:
    • Site-wide: 111,614
  • Since beginning of last month:
    • Site-wide: 157,346

Drug-induced resistance evolution necessitates less aggressive treatment

evolutionary biology more details view paper
  • Downloaded 277 times
  • Download rankings, all-time:
    • Site-wide: 127,089
    • In evolutionary biology: 6,117
  • Year to date:
    • Site-wide: 138,082
  • Since beginning of last month:
    • Site-wide: 165,178

Inferring perturbation profiles of cancer samples

bioinformatics more details view paper
  • Downloaded 241 times
  • Download rankings, all-time:
    • Site-wide: 136,800
    • In bioinformatics: 10,802
  • Year to date:
    • Site-wide: 91,554
  • Since beginning of last month:
    • Site-wide: 141,504

Learning epistatic gene interactions from perturbation screens

bioinformatics more details view paper
  • Downloaded 240 times
  • Download rankings, all-time:
    • Site-wide: 136,980
    • In bioinformatics: 10,811
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 131,614

Dynamic changes of genomic and transcriptomic tumor diversity during melanoma progression

cancer biology more details view paper
  • Downloaded 168 times
  • Download rankings, all-time:
    • Site-wide: 154,779
    • In cancer biology: 4,756
  • Year to date:
    • Site-wide: 87,651
  • Since beginning of last month:
    • Site-wide: 163,820

Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C

evolutionary biology more details view paper
  • Downloaded 146 times
  • Download rankings, all-time:
    • Site-wide: 159,079
    • In evolutionary biology: 7,454
  • Year to date:
    • Site-wide: 51,230
  • Since beginning of last month:
    • Site-wide: 131,934

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