Rxivist logo

Author: Elana J Fertig

Rankings

  • All-time downloads: 26,677 (rank: 1,701 out of 381,392)
  • Categories:
    • bioinformatics: 10,398 (rank: 521 out of 32,686)
    • cancer biology: 4,421 (rank: 453 out of 26,234)
    • developmental biology: 3,582 (rank: 269 (tie) out of 14,721)
    • genomics: 1,163 (rank: 15,354 (tie) out of 40,691)
    • neuroscience: 2,889 (rank: 4,962 (tie) out of 64,060)
    • systems biology: 4,224 (rank: 579 out of 11,231)

Downloads per author, site-wide

Preprints

Functional normalization of 450k methylation array data improves replication in large cancer studies

bioinformatics more details view paper
  • Downloaded 3,646 times
  • Download rankings, all-time:
    • Site-wide: 1,308 out of 88,970
    • In bioinformatics: 223 out of 8,406
  • Year to date:
    • Site-wide: 24,395 out of 88,970
  • Since beginning of last month:
    • Site-wide: 22,009 out of 88,970

Comprehensive analysis of retinal development at single cell resolution identifies NFI factors as essential for mitotic exit and specification of late-born cells

developmental biology more details view paper
  • Downloaded 3,582 times
  • Download rankings, all-time:
    • Site-wide: 1,351 out of 88,970
    • In developmental biology: 18 out of 2,650
  • Year to date:
    • Site-wide: 7,059 out of 88,970
  • Since beginning of last month:
    • Site-wide: 9,323 out of 88,970

Enter the matrix: factorization uncovers knowledge from omics

systems biology more details view paper
  • Downloaded 3,003 times
  • Download rankings, all-time:
    • Site-wide: 1,842 out of 88,970
    • In systems biology: 43 out of 2,305
  • Year to date:
    • Site-wide: 27,150 out of 88,970
  • Since beginning of last month:
    • Site-wide: 25,608 out of 88,970

Epigenetic Regulation of Gene Expression in Cancer: Techniques, Resources, and Analysis

cancer biology more details view paper
  • Downloaded 1,938 times
  • Download rankings, all-time:
    • Site-wide: 3,812 out of 88,970
    • In cancer biology: 84 out of 3,129
  • Year to date:
    • Site-wide: 25,265 out of 88,970
  • Since beginning of last month:
    • Site-wide: 13,458 out of 88,970

Single-cell analysis of human retina identifies evolutionarily conserved and species-specific mechanisms controlling development.

neuroscience more details view paper
  • Downloaded 1,925 times
  • Download rankings, all-time:
    • Site-wide: 3,858 out of 88,970
    • In neuroscience: 563 out of 15,825
  • Year to date:
    • Site-wide: 1,691 out of 88,970
  • Since beginning of last month:
    • Site-wide: 3,759 out of 88,970

Decomposing cell identity for transfer learning across cellular measurements, platforms, tissues, and species.

bioinformatics more details view paper
  • Downloaded 1,854 times
  • Download rankings, all-time:
    • Site-wide: 4,118 out of 88,970
    • In bioinformatics: 764 out of 8,406
  • Year to date:
    • Site-wide: 31,808 out of 88,970
  • Since beginning of last month:
    • Site-wide: 58,259 out of 88,970

Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance.

cancer biology more details view paper
  • Downloaded 1,452 times
  • Download rankings, all-time:
    • Site-wide: 6,142 out of 88,970
    • In cancer biology: 159 out of 3,129
  • Year to date:
    • Site-wide: 30,307 out of 88,970
  • Since beginning of last month:
    • Site-wide: 23,251 out of 88,970

CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer

systems biology more details view paper
  • Downloaded 1,221 times
  • Download rankings, all-time:
    • Site-wide: 8,223 out of 88,970
    • In systems biology: 232 out of 2,305
  • Year to date:
    • Site-wide: 34,026 out of 88,970
  • Since beginning of last month:
    • Site-wide: 31,081 out of 88,970

Splice Expression Variation Analysis (SEVA) for Inter-tumor Heterogeneity of Gene Isoform Usage in Cancer

genomics more details view paper
  • Downloaded 1,163 times
  • Download rankings, all-time:
    • Site-wide: 8,924 out of 88,970
    • In genomics: 1,330 out of 5,671
  • Year to date:
    • Site-wide: 43,309 out of 88,970
  • Since beginning of last month:
    • Site-wide: 33,522 out of 88,970

Expression variation analysis for tumor heterogeneity in single-cell RNA-sequencing data

bioinformatics more details view paper
  • Downloaded 1,024 times
  • Download rankings, all-time:
    • Site-wide: 10,987 out of 88,970
    • In bioinformatics: 1,791 out of 8,406
  • Year to date:
    • Site-wide: 21,437 out of 88,970
  • Since beginning of last month:
    • Site-wide: 48,697 out of 88,970

Variation of human neural stem cells generating organizer states in vitro before committing to cortical excitatory or inhibitory neuronal fates

neuroscience more details view paper
  • Downloaded 964 times
  • Download rankings, all-time:
    • Site-wide: 12,084 out of 88,970
    • In neuroscience: 1,915 out of 15,825
  • Year to date:
    • Site-wide: 5,967 out of 88,970
  • Since beginning of last month:
    • Site-wide: 41,732 out of 88,970

StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data

bioinformatics more details view paper
  • Downloaded 916 times
  • Download rankings, all-time:
    • Site-wide: 13,089 out of 88,970
    • In bioinformatics: 2,079 out of 8,406
  • Year to date:
    • Site-wide: 40,285 out of 88,970
  • Since beginning of last month:
    • Site-wide: 27,393 out of 88,970

Integrated single cell and bulk multi-omics reveals heterogeneity and early changes in pathways associated with cetuximab resistance in HNSCC sensitive cell lines

cancer biology more details view paper
  • Downloaded 609 times
  • Download rankings, all-time:
    • Site-wide: 24,151 out of 88,970
    • In cancer biology: 738 out of 3,129
  • Year to date:
    • Site-wide: 11,632 out of 88,970
  • Since beginning of last month:
    • Site-wide: 20,326 out of 88,970

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF

bioinformatics more details view paper
  • Downloaded 598 times
  • Download rankings, all-time:
    • Site-wide: 24,711 out of 88,970
    • In bioinformatics: 3,420 out of 8,406
  • Year to date:
    • Site-wide: 53,583 out of 88,970
  • Since beginning of last month:
    • Site-wide: 79,061 out of 88,970

Matrix factorization and transfer learning uncover regulatory biology across multiple single-cell ATAC-seq data sets

bioinformatics more details view paper
  • Downloaded 562 times
  • Download rankings, all-time:
    • Site-wide: 26,919 out of 88,970
    • In bioinformatics: 3,648 out of 8,406
  • Year to date:
    • Site-wide: 3,278 out of 88,970
  • Since beginning of last month:
    • Site-wide: 15,390 out of 88,970

projectR: An R/Bioconductor package for transfer learning via PCA, NMF, correlation, and clustering

bioinformatics more details view paper
  • Downloaded 487 times
  • Download rankings, all-time:
    • Site-wide: 32,121 out of 88,970
    • In bioinformatics: 4,138 out of 8,406
  • Year to date:
    • Site-wide: 35,610 out of 88,970
  • Since beginning of last month:
    • Site-wide: 69,514 out of 88,970

Synthesizer: Expediting synthesis studies from context-free data with natural language processing

bioinformatics more details view paper
  • Downloaded 440 times
  • Download rankings, all-time:
    • Site-wide: 36,260 out of 88,970
    • In bioinformatics: 4,507 out of 8,406
  • Year to date:
    • Site-wide: 78,972 out of 88,970
  • Since beginning of last month:
    • Site-wide: 54,130 out of 88,970

REVA: a rank-based multi-dimensional measure of correlation

bioinformatics more details view paper
  • Downloaded 439 times
  • Download rankings, all-time:
    • Site-wide: 36,353 out of 88,970
    • In bioinformatics: 4,516 out of 8,406
  • Year to date:
    • Site-wide: 52,912 out of 88,970
  • Since beginning of last month:
    • Site-wide: 65,820 out of 88,970

CoGAPS 3: Bayesian non-negative matrix factorization for single-cell analysis with asynchronous updates and sparse data structures

bioinformatics more details view paper
  • Downloaded 432 times
  • Download rankings, all-time:
    • Site-wide: 37,029 out of 88,970
    • In bioinformatics: 4,577 out of 8,406
  • Year to date:
    • Site-wide: 23,216 out of 88,970
  • Since beginning of last month:
    • Site-wide: 14,651 out of 88,970

Aging interacts with tumor biology to produce major changes in the immune tumor microenvironment

cancer biology more details view paper
  • Downloaded 156 times
  • Download rankings, all-time:
    • Site-wide: 76,209 out of 88,970
    • In cancer biology: 2,578 out of 3,129
  • Year to date:
    • Site-wide: 22,196 out of 88,970
  • Since beginning of last month:
    • Site-wide: 1,900 out of 88,970

Immune Selection Pressure Contributes to Pancreatic Cancer Immune Evasion

cancer biology more details view paper
  • Downloaded 135 times
  • Download rankings, all-time:
    • Site-wide: 79,096 out of 88,970
    • In cancer biology: 2,704 out of 3,129
  • Year to date:
    • Site-wide: 26,712 out of 88,970
  • Since beginning of last month:
    • Site-wide: 2,283 out of 88,970

A novel mechanism of natural killer cell response to anti-CTLA-4 therapy identified by integrative analysis of mouse and human tumors

cancer biology more details view paper
  • Downloaded 131 times
  • Download rankings, all-time:
    • Site-wide: 79,541 out of 88,970
    • In cancer biology: 2,728 out of 3,129
  • Year to date:
    • Site-wide: 27,732 out of 88,970
  • Since beginning of last month:
    • Site-wide: 2,365 out of 88,970

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News