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Author: Elana J. Fertig

Rankings

  • All-time downloads: 28,910 (rank: 1,814 out of 426,414)
  • Categories:
    • bioinformatics: 11,454 (rank: 502 out of 36,234)
    • cancer biology: 4,946 (rank: 444 out of 30,506)
    • developmental biology: 3,753 (rank: 287 (tie) out of 16,961)
    • genomics: 1,200 (rank: 16,411 (tie) out of 44,644)
    • neuroscience: 3,226 (rank: 5,162 out of 72,387)
    • systems biology: 4,331 (rank: 633 out of 12,484)

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Preprints

nearBynding: A flexible pipeline characterizing protein binding to local RNA structure

bioinformatics more details view paper

No bioRxiv download data for this paper yet.

Comprehensive analysis of retinal development at single cell resolution identifies NFI factors as essential for mitotic exit and specification of late-born cells

developmental biology more details view paper
  • Downloaded 3,753 times
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    • Site-wide: 1,450 out of 100,936
    • In developmental biology: 18 out of 3,013
  • Year to date:
    • Site-wide: 7,304 out of 100,936
  • Since beginning of last month:
    • Site-wide: 8,924 out of 100,936

Functional normalization of 450k methylation array data improves replication in large cancer studies

bioinformatics more details view paper
  • Downloaded 3,733 times
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    • Site-wide: 1,465 out of 100,936
    • In bioinformatics: 242 out of 9,264
  • Year to date:
    • Site-wide: 23,912 out of 100,936
  • Since beginning of last month:
    • Site-wide: 92,559 out of 100,936

Enter the matrix: factorization uncovers knowledge from omics

systems biology more details view paper
  • Downloaded 3,068 times
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    • Site-wide: 2,095 out of 100,936
    • In systems biology: 52 out of 2,563
  • Year to date:
    • Site-wide: 29,542 out of 100,936
  • Since beginning of last month:
    • Site-wide: 30,386 out of 100,936

Single-cell analysis of human retina identifies evolutionarily conserved and species-specific mechanisms controlling development.

neuroscience more details view paper
  • Downloaded 2,177 times
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    • Site-wide: 3,674 out of 100,936
    • In neuroscience: 514 out of 17,983
  • Year to date:
    • Site-wide: 2,176 out of 100,936
  • Since beginning of last month:
    • Site-wide: 6,146 out of 100,936

Epigenetic Regulation of Gene Expression in Cancer: Techniques, Resources, and Analysis

cancer biology more details view paper
  • Downloaded 1,992 times
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    • Site-wide: 4,235 out of 100,936
    • In cancer biology: 93 out of 3,615
  • Year to date:
    • Site-wide: 30,237 out of 100,936
  • Since beginning of last month:
    • Site-wide: 46,372 out of 100,936

Decomposing cell identity for transfer learning across cellular measurements, platforms, tissues, and species.

bioinformatics more details view paper
  • Downloaded 1,926 times
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    • Site-wide: 4,488 out of 100,936
    • In bioinformatics: 803 out of 9,264
  • Year to date:
    • Site-wide: 31,417 out of 100,936
  • Since beginning of last month:
    • Site-wide: 24,104 out of 100,936

Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance.

cancer biology more details view paper
  • Downloaded 1,531 times
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    • Site-wide: 6,612 out of 100,936
    • In cancer biology: 171 out of 3,615
  • Year to date:
    • Site-wide: 29,083 out of 100,936
  • Since beginning of last month:
    • Site-wide: 24,416 out of 100,936

CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer

systems biology more details view paper
  • Downloaded 1,263 times
  • Download rankings, all-time:
    • Site-wide: 9,167 out of 100,936
    • In systems biology: 245 out of 2,563
  • Year to date:
    • Site-wide: 41,090 out of 100,936
  • Since beginning of last month:
    • Site-wide: 56,174 out of 100,936

Splice Expression Variation Analysis (SEVA) for Inter-tumor Heterogeneity of Gene Isoform Usage in Cancer

genomics more details view paper
  • Downloaded 1,200 times
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    • Site-wide: 9,994 out of 100,936
    • In genomics: 1,427 out of 6,255
  • Year to date:
    • Site-wide: 50,886 out of 100,936
  • Since beginning of last month:
    • Site-wide: 56,973 out of 100,936

Expression variation analysis for tumor heterogeneity in single-cell RNA-sequencing data

bioinformatics more details view paper
  • Downloaded 1,080 times
  • Download rankings, all-time:
    • Site-wide: 11,850 out of 100,936
    • In bioinformatics: 1,874 out of 9,264
  • Year to date:
    • Site-wide: 26,403 out of 100,936
  • Since beginning of last month:
    • Site-wide: 41,859 out of 100,936

Variation of human neural stem cells generating organizer states in vitro before committing to cortical excitatory or inhibitory neuronal fates

neuroscience more details view paper
  • Downloaded 1,049 times
  • Download rankings, all-time:
    • Site-wide: 12,420 out of 100,936
    • In neuroscience: 1,956 out of 17,983
  • Year to date:
    • Site-wide: 8,538 out of 100,936
  • Since beginning of last month:
    • Site-wide: 22,428 out of 100,936

StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data

bioinformatics more details view paper
  • Downloaded 987 times
  • Download rankings, all-time:
    • Site-wide: 13,712 out of 100,936
    • In bioinformatics: 2,125 out of 9,264
  • Year to date:
    • Site-wide: 36,951 out of 100,936
  • Since beginning of last month:
    • Site-wide: 39,740 out of 100,936

Integrated single cell and bulk multi-omics reveals heterogeneity and early changes in pathways associated with cetuximab resistance in HNSCC sensitive cell lines

cancer biology more details view paper
  • Downloaded 657 times
  • Download rankings, all-time:
    • Site-wide: 25,502 out of 100,936
    • In cancer biology: 807 out of 3,615
  • Year to date:
    • Site-wide: 17,075 out of 100,936
  • Since beginning of last month:
    • Site-wide: 46,206 out of 100,936

Matrix factorization and transfer learning uncover regulatory biology across multiple single-cell ATAC-seq data sets

bioinformatics more details view paper
  • Downloaded 639 times
  • Download rankings, all-time:
    • Site-wide: 26,504 out of 100,936
    • In bioinformatics: 3,610 out of 9,264
  • Year to date:
    • Site-wide: 5,171 out of 100,936
  • Since beginning of last month:
    • Site-wide: 30,777 out of 100,936

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF

bioinformatics more details view paper
  • Downloaded 628 times
  • Download rankings, all-time:
    • Site-wide: 27,137 out of 100,936
    • In bioinformatics: 3,677 out of 9,264
  • Year to date:
    • Site-wide: 62,311 out of 100,936
  • Since beginning of last month:
    • Site-wide: 91,411 out of 100,936

projectR: An R/Bioconductor package for transfer learning via PCA, NMF, correlation, and clustering

bioinformatics more details view paper
  • Downloaded 549 times
  • Download rankings, all-time:
    • Site-wide: 32,402 out of 100,936
    • In bioinformatics: 4,189 out of 9,264
  • Year to date:
    • Site-wide: 36,429 out of 100,936
  • Since beginning of last month:
    • Site-wide: 39,625 out of 100,936

CoGAPS 3: Bayesian non-negative matrix factorization for single-cell analysis with asynchronous updates and sparse data structures

bioinformatics more details view paper
  • Downloaded 545 times
  • Download rankings, all-time:
    • Site-wide: 32,662 out of 100,936
    • In bioinformatics: 4,215 out of 9,264
  • Year to date:
    • Site-wide: 19,955 out of 100,936
  • Since beginning of last month:
    • Site-wide: 14,188 out of 100,936

REVA: a rank-based multi-dimensional measure of correlation

bioinformatics more details view paper
  • Downloaded 509 times
  • Download rankings, all-time:
    • Site-wide: 35,655 out of 100,936
    • In bioinformatics: 4,490 out of 9,264
  • Year to date:
    • Site-wide: 44,114 out of 100,936
  • Since beginning of last month:
    • Site-wide: 22,286 out of 100,936

Synthesizer: Expediting synthesis studies from context-free data with natural language processing

bioinformatics more details view paper
  • Downloaded 471 times
  • Download rankings, all-time:
    • Site-wide: 39,212 out of 100,936
    • In bioinformatics: 4,805 out of 9,264
  • Year to date:
    • Site-wide: 80,336 out of 100,936
  • Since beginning of last month:
    • Site-wide: 75,623 out of 100,936

Intercellular signaling dynamics from a single cell atlas of the biomaterials response

bioinformatics more details view paper
  • Downloaded 387 times
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    • Site-wide: 48,649 out of 100,936
    • In bioinformatics: 5,633 out of 9,264
  • Year to date:
    • Site-wide: 11,320 out of 100,936
  • Since beginning of last month:
    • Site-wide: 1,722 out of 100,936

A novel mechanism of natural killer cell response to anti-CTLA-4 therapy identified by integrative analysis of mouse and human tumors

cancer biology more details view paper
  • Downloaded 286 times
  • Download rankings, all-time:
    • Site-wide: 63,524 out of 100,936
    • In cancer biology: 2,074 out of 3,615
  • Year to date:
    • Site-wide: 17,848 out of 100,936
  • Since beginning of last month:
    • Site-wide: 12,481 out of 100,936

Aging interacts with tumor biology to produce major changes in the immune tumor microenvironment

cancer biology more details view paper
  • Downloaded 256 times
  • Download rankings, all-time:
    • Site-wide: 68,573 out of 100,936
    • In cancer biology: 2,262 out of 3,615
  • Year to date:
    • Site-wide: 20,767 out of 100,936
  • Since beginning of last month:
    • Site-wide: 20,465 out of 100,936

Immune Selection Pressure Contributes to Pancreatic Cancer Immune Evasion

cancer biology more details view paper
  • Downloaded 224 times
  • Download rankings, all-time:
    • Site-wide: 74,406 out of 100,936
    • In cancer biology: 2,505 out of 3,615
  • Year to date:
    • Site-wide: 25,163 out of 100,936
  • Since beginning of last month:
    • Site-wide: 26,274 out of 100,936

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  • 20 Oct 2020: Support for sorting preprints using Twitter activity has been removed, at least temporarily, until a new source of social media activity data becomes available.
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