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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,095 bioRxiv papers from 295,270 authors.

Author: Oliver Stegle

Rankings

  • All-time downloads: 107,319 (rank: 60 out of 295,131)
  • Categories:
    • bioinformatics: 23,066 (rank: 73 out of 25,701)
    • cancer biology: 1,847 (rank: 1,189 (tie) out of 18,672)
    • cell biology: 12,672 (rank: 42 (tie) out of 19,926)
    • developmental biology: 6,448 (rank: 28 out of 11,139)
    • genetics: 10,841 (rank: 858 out of 29,432)
    • genomics: 48,719 (rank: 110 out of 33,598)
    • neuroscience: 202 (rank: 38,174 (tie) out of 49,431)
    • systems biology: 3,524 (rank: 355 out of 8,899)

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,789 times
  • Download rankings, all-time:
    • Site-wide: 86 out of 67,044
    • In cell biology: 3 out of 3,248
  • Year to date:
    • Site-wide: 4,751 out of 67,044
  • Since beginning of last month:
    • Site-wide: 6,967 out of 67,044

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 8,535 times
  • Download rankings, all-time:
    • Site-wide: 161 out of 67,044
    • In genomics: 49 out of 4,558
  • Year to date:
    • Site-wide: 33 out of 67,044
  • Since beginning of last month:
    • Site-wide: 134 out of 67,044

Unraveling the polygenic architecture of complex traits using blood eQTL meta-analysis

genomics more details view paper
  • Downloaded 6,072 times
  • Download rankings, all-time:
    • Site-wide: 313 out of 67,044
    • In genomics: 83 out of 4,558
  • Year to date:
    • Site-wide: 146 out of 67,044
  • Since beginning of last month:
    • Site-wide: 630 out of 67,044

Accurate prediction of single-cell DNA methylation states using deep learning

bioinformatics more details view paper
  • Downloaded 5,899 times
  • Download rankings, all-time:
    • Site-wide: 327 out of 67,044
    • In bioinformatics: 61 out of 6,614
  • Year to date:
    • Site-wide: 10,470 out of 67,044
  • Since beginning of last month:
    • Site-wide: 14,983 out of 67,044

LIMIX: genetic analysis of multiple traits

genetics more details view paper
  • Downloaded 5,752 times
  • Download rankings, all-time:
    • Site-wide: 347 out of 67,044
    • In genetics: 40 out of 3,773
  • Year to date:
    • Site-wide: 11,133 out of 67,044
  • Since beginning of last month:
    • Site-wide: 11,936 out of 67,044

Single cell multi-omics profiling reveals a hierarchical epigenetic landscape during mammalian germ layer specification

developmental biology more details view paper
  • Downloaded 5,108 times
  • Download rankings, all-time:
    • Site-wide: 414 out of 67,044
    • In developmental biology: 6 out of 1,989
  • Year to date:
    • Site-wide: 91 out of 67,044
  • Since beginning of last month:
    • Site-wide: 626 out of 67,044

Multi-Omics factor analysis - a framework for unsupervised integration of multi-omic data sets

bioinformatics more details view paper
  • Downloaded 4,562 times
  • Download rankings, all-time:
    • Site-wide: 522 out of 67,044
    • In bioinformatics: 107 out of 6,614
  • Year to date:
    • Site-wide: 3,388 out of 67,044
  • Since beginning of last month:
    • Site-wide: 7,556 out of 67,044

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

genomics more details view paper
  • Downloaded 4,544 times
  • Download rankings, all-time:
    • Site-wide: 526 out of 67,044
    • In genomics: 138 out of 4,558
  • Year to date:
    • Site-wide: 7,463 out of 67,044
  • Since beginning of last month:
    • Site-wide: 24,512 out of 67,044

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

genomics more details view paper
  • Downloaded 4,295 times
  • Download rankings, all-time:
    • Site-wide: 596 out of 67,044
    • In genomics: 154 out of 4,558
  • Year to date:
    • Site-wide: 1,293 out of 67,044
  • Since beginning of last month:
    • Site-wide: 6,145 out of 67,044

Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants

genomics more details view paper
  • Downloaded 3,947 times
  • Download rankings, all-time:
    • Site-wide: 700 out of 67,044
    • In genomics: 182 out of 4,558
  • Year to date:
    • Site-wide: 251 out of 67,044
  • Since beginning of last month:
    • Site-wide: 5,030 out of 67,044

Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types

genomics more details view paper
  • Downloaded 3,566 times
  • Download rankings, all-time:
    • Site-wide: 852 out of 67,044
    • In genomics: 219 out of 4,558
  • Year to date:
    • Site-wide: 2,205 out of 67,044
  • Since beginning of last month:
    • Site-wide: 3,773 out of 67,044

Modelling cell-cell interactions from spatial molecular data with spatial variance component analysis

bioinformatics more details view paper
  • Downloaded 3,137 times
  • Download rankings, all-time:
    • Site-wide: 1,080 out of 67,044
    • In bioinformatics: 220 out of 6,614
  • Year to date:
    • Site-wide: 1,511 out of 67,044
  • Since beginning of last month:
    • Site-wide: 5,466 out of 67,044

Kipoi: accelerating the community exchange and reuse of predictive models for genomics

bioinformatics more details view paper
  • Downloaded 2,865 times
  • Download rankings, all-time:
    • Site-wide: 1,282 out of 67,044
    • In bioinformatics: 259 out of 6,614
  • Year to date:
    • Site-wide: 787 out of 67,044
  • Since beginning of last month:
    • Site-wide: 2,194 out of 67,044

Scalable latent-factor models applied to single-cell RNA-seq data separate biological drivers from confounding effects

bioinformatics more details view paper
  • Downloaded 2,780 times
  • Download rankings, all-time:
    • Site-wide: 1,349 out of 67,044
    • In bioinformatics: 270 out of 6,614
  • Year to date:
    • Site-wide: 45,812 out of 67,044
  • Since beginning of last month:
    • Site-wide: 58,976 out of 67,044

SpatialDE - Identification of spatially variable genes

genomics more details view paper
  • Downloaded 2,753 times
  • Download rankings, all-time:
    • Site-wide: 1,372 out of 67,044
    • In genomics: 312 out of 4,558
  • Year to date:
    • Site-wide: 10,401 out of 67,044
  • Since beginning of last month:
    • Site-wide: 7,390 out of 67,044

Temporal mixture modelling of single-cell RNA-seq data resolves a CD4+ T cell fate bifurcation

systems biology more details view paper
  • Downloaded 2,736 times
  • Download rankings, all-time:
    • Site-wide: 1,383 out of 67,044
    • In systems biology: 30 out of 1,863
  • Year to date:
    • Site-wide: 22,796 out of 67,044
  • Since beginning of last month:
    • Site-wide: 40,718 out of 67,044

Common genetic variation drives molecular heterogeneity in human iPSCs

genomics more details view paper
  • Downloaded 2,597 times
  • Download rankings, all-time:
    • Site-wide: 1,514 out of 67,044
    • In genomics: 341 out of 4,558
  • Year to date:
    • Site-wide: 34,820 out of 67,044
  • Since beginning of last month:
    • Site-wide: 44,439 out of 67,044

A linear mixed model approach to study multivariate gene-environment interactions

genetics more details view paper
  • Downloaded 2,092 times
  • Download rankings, all-time:
    • Site-wide: 2,241 out of 67,044
    • In genetics: 208 out of 3,773
  • Year to date:
    • Site-wide: 5,358 out of 67,044
  • Since beginning of last month:
    • Site-wide: 18,291 out of 67,044

A Pan-Cancer Transcriptome Analysis Reveals Pervasive Regulation through Tumor-Associated Alternative Promoters

genomics more details view paper
  • Downloaded 1,995 times
  • Download rankings, all-time:
    • Site-wide: 2,440 out of 67,044
    • In genomics: 506 out of 4,558
  • Year to date:
    • Site-wide: 3,274 out of 67,044
  • Since beginning of last month:
    • Site-wide: 8,597 out of 67,044

Single-cell RNA-seq of differentiating iPS cells reveals dynamic genetic effects on gene expression

genomics more details view paper
  • Downloaded 1,979 times
  • Download rankings, all-time:
    • Site-wide: 2,473 out of 67,044
    • In genomics: 514 out of 4,558
  • Year to date:
    • Site-wide: 539 out of 67,044
  • Since beginning of last month:
    • Site-wide: 1,153 out of 67,044

A single-cell transcriptomics CRISPR-activation screen identifies new epigenetic regulators of zygotic genome activation

developmental biology more details view paper
  • Downloaded 1,340 times
  • Download rankings, all-time:
    • Site-wide: 4,761 out of 67,044
    • In developmental biology: 88 out of 1,989
  • Year to date:
    • Site-wide: 1,147 out of 67,044
  • Since beginning of last month:
    • Site-wide: 2,551 out of 67,044

Assessing the Gene Regulatory Landscape in 1,188 Human Tumors

cancer biology more details view paper
  • Downloaded 1,255 times
  • Download rankings, all-time:
    • Site-wide: 5,297 out of 67,044
    • In cancer biology: 142 out of 2,261
  • Year to date:
    • Site-wide: 18,986 out of 67,044
  • Since beginning of last month:
    • Site-wide: 15,653 out of 67,044

Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference

bioinformatics more details view paper
  • Downloaded 1,189 times
  • Download rankings, all-time:
    • Site-wide: 5,786 out of 67,044
    • In bioinformatics: 1,098 out of 6,614
  • Year to date:
    • Site-wide: 1,419 out of 67,044
  • Since beginning of last month:
    • Site-wide: 2,389 out of 67,044

Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity

bioinformatics more details view paper
  • Downloaded 1,173 times
  • Download rankings, all-time:
    • Site-wide: 5,934 out of 67,044
    • In bioinformatics: 1,123 out of 6,614
  • Year to date:
    • Site-wide: 11,647 out of 67,044
  • Since beginning of last month:
    • Site-wide: 19,111 out of 67,044

Screening for genes that accelerate the epigenetic ageing clock in humans reveals a role for the H3K36 methyltransferase NSD1

genomics more details view paper
  • Downloaded 1,109 times
  • Download rankings, all-time:
    • Site-wide: 6,534 out of 67,044
    • In genomics: 1,068 out of 4,558
  • Year to date:
    • Site-wide: 1,613 out of 67,044
  • Since beginning of last month:
    • Site-wide: 15,669 out of 67,044

LiMMBo: a simple, scalable approach for linear mixed models in high-dimensional genetic association studies

genomics more details view paper
  • Downloaded 1,033 times
  • Download rankings, all-time:
    • Site-wide: 7,295 out of 67,044
    • In genomics: 1,181 out of 4,558
  • Year to date:
    • Site-wide: 19,813 out of 67,044
  • Since beginning of last month:
    • Site-wide: 17,841 out of 67,044

Population-scale proteome variation in human induced pluripotent stem cells

genomics more details view paper
  • Downloaded 1,013 times
  • Download rankings, all-time:
    • Site-wide: 7,536 out of 67,044
    • In genomics: 1,205 out of 4,558
  • Year to date:
    • Site-wide: 7,820 out of 67,044
  • Since beginning of last month:
    • Site-wide: 7,203 out of 67,044

Genome-scale oscillations in DNA methylation during exit from pluripotency

genomics more details view paper
  • Downloaded 941 times
  • Download rankings, all-time:
    • Site-wide: 8,513 out of 67,044
    • In genomics: 1,321 out of 4,558
  • Year to date:
    • Site-wide: 32,138 out of 67,044
  • Since beginning of last month:
    • Site-wide: 56,772 out of 67,044

Genome-wide Analysis of Differential Transcriptional and Epigenetic Variability Across Human Immune Cell Types

genomics more details view paper
  • Downloaded 928 times
  • Download rankings, all-time:
    • Site-wide: 8,703 out of 67,044
    • In genomics: 1,339 out of 4,558
  • Year to date:
    • Site-wide: 50,501 out of 67,044
  • Since beginning of last month:
    • Site-wide: 61,703 out of 67,044

Comparative architectures of direct and social genetic effects from the genome-wide association study of 170 phenotypes in laboratory mice

genetics more details view paper
  • Downloaded 908 times
  • Download rankings, all-time:
    • Site-wide: 9,000 out of 67,044
    • In genetics: 668 out of 3,773
  • Year to date:
    • Site-wide: 6,417 out of 67,044
  • Since beginning of last month:
    • Site-wide: 22,585 out of 67,044

Joint genetic analysis using variant sets reveals polygenic gene-context interactions

genetics more details view paper
  • Downloaded 886 times
  • Download rankings, all-time:
    • Site-wide: 9,329 out of 67,044
    • In genetics: 689 out of 3,773
  • Year to date:
    • Site-wide: 61,784 out of 67,044
  • Since beginning of last month:
    • Site-wide: 54,627 out of 67,044

Identifying extrinsic versus intrinsic drivers of variation in cell behaviour in human iPS cell lines from healthy donors

cell biology more details view paper
  • Downloaded 883 times
  • Download rankings, all-time:
    • Site-wide: 9,368 out of 67,044
    • In cell biology: 332 out of 3,248
  • Year to date:
    • Site-wide: 20,611 out of 67,044
  • Since beginning of last month:
    • Site-wide: 39,188 out of 67,044

Genomic determinants of protein abundance variation in colorectal cancer cells

systems biology more details view paper
  • Downloaded 788 times
  • Download rankings, all-time:
    • Site-wide: 11,212 out of 67,044
    • In systems biology: 313 out of 1,863
  • Year to date:
    • Site-wide: 42,266 out of 67,044
  • Since beginning of last month:
    • Site-wide: 18,901 out of 67,044

MOFA+: a probabilistic framework for comprehensive integration of structured single-cell data

bioinformatics more details view paper
  • Downloaded 743 times
  • Download rankings, all-time:
    • Site-wide: 12,209 out of 67,044
    • In bioinformatics: 2,016 out of 6,614
  • Year to date:
    • Site-wide: 3,249 out of 67,044
  • Since beginning of last month:
    • Site-wide: 83 out of 67,044

Systematic assessment of regulatory effects of human disease variants in pluripotent cells

genomics more details view paper
  • Downloaded 740 times
  • Download rankings, all-time:
    • Site-wide: 12,289 out of 67,044
    • In genomics: 1,714 out of 4,558
  • Year to date:
    • Site-wide: 3,275 out of 67,044
  • Since beginning of last month:
    • Site-wide: 1,211 out of 67,044

Robustness and applicability of functional genomics tools on scRNA-seq data

bioinformatics more details view paper
  • Downloaded 718 times
  • Download rankings, all-time:
    • Site-wide: 12,838 out of 67,044
    • In bioinformatics: 2,093 out of 6,614
  • Year to date:
    • Site-wide: 3,451 out of 67,044
  • Since beginning of last month:
    • Site-wide: 4,258 out of 67,044

Genomic Rearrangements Considered as Quantitative Traits

genetics more details view paper
  • Downloaded 718 times
  • Download rankings, all-time:
    • Site-wide: 12,836 out of 67,044
    • In genetics: 892 out of 3,773
  • Year to date:
    • Site-wide: 53,514 out of 67,044
  • Since beginning of last month:
    • Site-wide: 59,766 out of 67,044

Tandem duplications lead to loss of fitness effects in CRISPR-Cas9 data

genomics more details view paper
  • Downloaded 661 times
  • Download rankings, all-time:
    • Site-wide: 14,400 out of 67,044
    • In genomics: 1,897 out of 4,558
  • Year to date:
    • Site-wide: 32,998 out of 67,044
  • Since beginning of last month:
    • Site-wide: 46,513 out of 67,044

Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma

cancer biology more details view paper
  • Downloaded 592 times
  • Download rankings, all-time:
    • Site-wide: 16,819 out of 67,044
    • In cancer biology: 504 out of 2,261
  • Year to date:
    • Site-wide: 62,258 out of 67,044
  • Since beginning of last month:
    • Site-wide: 61,760 out of 67,044

Multi-Tissue DNA Methylation Age Predictor In Mouse

genomics more details view paper
  • Downloaded 528 times
  • Download rankings, all-time:
    • Site-wide: 19,594 out of 67,044
    • In genomics: 2,312 out of 4,558
  • Year to date:
    • Site-wide: 54,652 out of 67,044
  • Since beginning of last month:
    • Site-wide: 27,626 out of 67,044

Interactions between genetic variation and cellular environment in skeletal muscle gene expression

genetics more details view paper
  • Downloaded 485 times
  • Download rankings, all-time:
    • Site-wide: 21,723 out of 67,044
    • In genetics: 1,456 out of 3,773
  • Year to date:
    • Site-wide: 61,843 out of 67,044
  • Since beginning of last month:
    • Site-wide: 48,685 out of 67,044

Genomic properties of structural variants and short tandem repeats that impact gene expression and complex traits in humans

genomics more details view paper
  • Downloaded 418 times
  • Download rankings, all-time:
    • Site-wide: 25,895 out of 67,044
    • In genomics: 2,733 out of 4,558
  • Year to date:
    • Site-wide: 8,573 out of 67,044
  • Since beginning of last month:
    • Site-wide: 9,121 out of 67,044

Discovery and Quality Analysis of a Comprehensive Set of Structural Variants and Short Tandem Repeats

genomics more details view paper
  • Downloaded 407 times
  • Download rankings, all-time:
    • Site-wide: 26,712 out of 67,044
    • In genomics: 2,785 out of 4,558
  • Year to date:
    • Site-wide: 8,966 out of 67,044
  • Since beginning of last month:
    • Site-wide: 11,600 out of 67,044

Multi-omics characterization of interaction-mediated control of human protein abundance levels

genomics more details view paper
  • Downloaded 376 times
  • Download rankings, all-time:
    • Site-wide: 28,991 out of 67,044
    • In genomics: 2,943 out of 4,558
  • Year to date:
    • Site-wide: 23,019 out of 67,044
  • Since beginning of last month:
    • Site-wide: 55,440 out of 67,044

Systematic genetic analysis of the MHC region reveals mechanistic underpinnings of HLA type associations with disease

genomics more details view paper
  • Downloaded 282 times
  • Download rankings, all-time:
    • Site-wide: 37,901 out of 67,044
    • In genomics: 3,416 out of 4,558
  • Year to date:
    • Site-wide: 15,779 out of 67,044
  • Since beginning of last month:
    • Site-wide: 3,690 out of 67,044

Using the past to estimate sensory uncertainty

neuroscience more details view paper
  • Downloaded 202 times
  • Download rankings, all-time:
    • Site-wide: 47,826 out of 67,044
    • In neuroscience: 8,493 out of 12,017
  • Year to date:
    • Site-wide: 24,659 out of 67,044
  • Since beginning of last month:
    • Site-wide: 29,108 out of 67,044

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