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Author: Ran Blekhman

Rankings

  • All-time downloads: 68,704 (rank: 477 out of 360,338)
  • Categories:
    • bioinformatics: 8,161 (rank: 724 out of 31,172)
    • cancer biology: 2,139 (rank: 1,385 (tie) out of 24,447)
    • genomics: 41,142 (rank: 154 out of 39,009)
    • microbiology: 8,747 (rank: 736 out of 39,519)
    • scientific communication and education: 7,639 (rank: 48 out of 3,014)
    • systems biology: 876 (rank: 3,231 (tie) out of 10,774)

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Preprints

Common methods for fecal sample storage in field studies yield consistent signatures of individual identity in microbiome sequencing data

genomics more details view paper
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    • Site-wide: 63,699 out of 83,641

Tracking the popularity and outcomes of all bioRxiv preprints

scientific communication and education more details view paper
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    • Site-wide: 356 out of 83,641
    • In scientific communication and education: 11 out of 579
  • Year to date:
    • Site-wide: 1,180 out of 83,641
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    • Site-wide: 1,114 out of 83,641

Challenges and recommendations to improve installability and archival stability of omics computational tools

bioinformatics more details view paper
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    • In bioinformatics: 112 out of 8,021
  • Year to date:
    • Site-wide: 7,443 out of 83,641
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    • Site-wide: 18,009 out of 83,641

Gut microbiota has a widespread and modifiable effect on host gene regulation

genomics more details view paper
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    • Site-wide: 1,113 out of 83,641
    • In genomics: 248 out of 5,408
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    • Site-wide: 22,356 out of 83,641
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    • Site-wide: 21,152 out of 83,641

Global Genetic Cartography of Urban Metagenomes and Anti-Microbial Resistance

microbiology more details view paper
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    • In microbiology: 120 out of 7,116
  • Year to date:
    • Site-wide: 917 out of 83,641
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    • Site-wide: 1,098 out of 83,641

BugBase Predicts Organism Level Microbiome Phenotypes

bioinformatics more details view paper
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    • In bioinformatics: 309 out of 8,021
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Variation in rural African gut microbiota is strongly correlated with colonization by Entamoeba and subsistence

microbiology more details view paper
  • Downloaded 1,715 times
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    • In microbiology: 243 out of 7,116
  • Year to date:
    • Site-wide: 59,255 out of 83,641
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    • Site-wide: 51,950 out of 83,641

Colorectal cancer mutational profiles correlate with defined microbial communities in the tumor microenvironment

cancer biology more details view paper
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    • Site-wide: 4,826 out of 83,641
    • In cancer biology: 118 out of 2,917
  • Year to date:
    • Site-wide: 35,723 out of 83,641
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    • Site-wide: 30,399 out of 83,641

HOMINID: A framework for identifying associations between host genetic variation and microbiome composition

genomics more details view paper
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    • Site-wide: 5,652 out of 83,641
    • In genomics: 942 out of 5,408
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    • Site-wide: 35,993 out of 83,641

Gut Microbiota Diversity across Ethnicities in the United States

microbiology more details view paper
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    • In microbiology: 365 out of 7,116
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    • Site-wide: 30,914 out of 83,641
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    • Site-wide: 20,157 out of 83,641

Megaphage infect Prevotella and variants are widespread in gut microbiomes

microbiology more details view paper
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    • Site-wide: 6,788 out of 83,641
    • In microbiology: 385 out of 7,116
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    • Site-wide: 18,694 out of 83,641
  • Since beginning of last month:
    • Site-wide: 14,093 out of 83,641

Ecological and evolutionary adaptations shape the gut microbiome of BaAka African rainforest hunter-gatherers

microbiology more details view paper
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    • Site-wide: 6,887 out of 83,641
    • In microbiology: 389 out of 7,116
  • Year to date:
    • Site-wide: 78,345 out of 83,641
  • Since beginning of last month:
    • Site-wide: 71,173 out of 83,641

Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment

genomics more details view paper
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    • Site-wide: 12,613 out of 83,641
    • In genomics: 1,735 out of 5,408
  • Year to date:
    • Site-wide: 74,757 out of 83,641
  • Since beginning of last month:
    • Site-wide: 70,311 out of 83,641

Interaction Between Host MicroRNAs and the Gut Microbiota in Colorectal Cancer

systems biology more details view paper
  • Downloaded 876 times
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    • Site-wide: 13,048 out of 83,641
    • In systems biology: 360 out of 2,214
  • Year to date:
    • Site-wide: 69,550 out of 83,641
  • Since beginning of last month:
    • Site-wide: 61,714 out of 83,641

Genetic and transcriptional analysis of human host response to healthy gut microbiome

genomics more details view paper
  • Downloaded 669 times
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    • Site-wide: 19,573 out of 83,641
    • In genomics: 2,313 out of 5,408
  • Year to date:
    • Site-wide: 75,026 out of 83,641
  • Since beginning of last month:
    • Site-wide: 69,825 out of 83,641

Interactions between the gut microbiome and host gene regulation in cystic fibrosis

genomics more details view paper
  • Downloaded 598 times
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    • Site-wide: 23,026 out of 83,641
    • In genomics: 2,572 out of 5,408
  • Year to date:
    • Site-wide: 19,648 out of 83,641
  • Since beginning of last month:
    • Site-wide: 26,875 out of 83,641

Distinct Microbes, Metabolites, and Ecologies Define the Microbiome in Deficient and Proficient Mismatch Repair Colorectal Cancers

cancer biology more details view paper
  • Downloaded 531 times
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    • Site-wide: 26,907 out of 83,641
    • In cancer biology: 844 out of 2,917
  • Year to date:
    • Site-wide: 59,103 out of 83,641
  • Since beginning of last month:
    • Site-wide: 73,778 out of 83,641

International authorship and collaboration in bioRxiv preprints

scientific communication and education more details view paper
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  • Download rankings, all-time:
    • Site-wide: 50,077 out of 83,641
    • In scientific communication and education: 329 out of 579
  • Year to date:
    • Site-wide: 5,853 out of 83,641
  • Since beginning of last month:
    • Site-wide: 1,672 out of 83,641

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