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Author: Aaron E. Darling

Rankings

  • All-time downloads: 22,239 (rank: 2,820 out of 428,488)
  • Categories:
    • bioinformatics: 15,895 (rank: 317 out of 36,286)
    • evolutionary biology: 807 (rank: 7,013 (tie) out of 21,835)
    • genomics: 4,551 (rank: 4,482 (tie) out of 44,721)
    • microbiology: 986 (rank: 10,639 (tie) out of 50,987)

Downloads per author, site-wide

Preprints

Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software

bioinformatics more details view paper
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    • In bioinformatics: 72 out of 9,300
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    • Site-wide: 15,969 out of 101,433
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    • Site-wide: 21,163 out of 101,433

Hackflex: low cost Illumina sequencing library construction for high sample counts

genomics more details view paper
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    • Site-wide: 1,509 out of 101,433
    • In genomics: 311 out of 6,283
  • Year to date:
    • Site-wide: 1,004 out of 101,433
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    • Site-wide: 1,480 out of 101,433

Alignathon: A competitive assessment of whole genome alignment methods.

bioinformatics more details view paper
  • Downloaded 3,262 times
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    • In bioinformatics: 319 out of 9,300
  • Year to date:
    • Site-wide: 52,354 out of 101,433
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    • Site-wide: 66,309 out of 101,433

CAMISIM: Simulating metagenomes and microbial communities

bioinformatics more details view paper
  • Downloaded 1,687 times
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    • In bioinformatics: 976 out of 9,300
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Effective Online Bayesian Phylogenetics Via Sequential Monte Carlo With Guided Proposals

bioinformatics more details view paper
  • Downloaded 788 times
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    • Site-wide: 19,610 out of 101,433
    • In bioinformatics: 2,872 out of 9,300
  • Year to date:
    • Site-wide: 72,222 out of 101,433
  • Since beginning of last month:
    • Site-wide: 71,844 out of 101,433

bin3C : Exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes (MAGs)

bioinformatics more details view paper
  • Downloaded 771 times
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    • In bioinformatics: 2,949 out of 9,300
  • Year to date:
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    • Site-wide: 70,233 out of 101,433

Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics

bioinformatics more details view paper
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    • In bioinformatics: 3,106 out of 9,300
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Sim3C: Simulation Of HiC And Meta3C Proximity Ligation Sequencing Technologies

bioinformatics more details view paper
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    • In bioinformatics: 3,567 out of 9,300
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A new massively-parallel transposon mutagenesis approach comparing multiple datasets identifies novel mechanisms of action and resistance to triclosan

microbiology more details view paper
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    • In microbiology: 2,077 out of 9,013
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    • Site-wide: 39,409 out of 101,433
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    • Site-wide: 49,858 out of 101,433

Metagenomics Strain Resolution on Assembly Graphs

bioinformatics more details view paper
  • Downloaded 570 times
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    • In bioinformatics: 4,041 out of 9,300
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    • Site-wide: 445 out of 101,433

The Impact of Migratory Flyways on the Spread of Avian Influenza Virus in North America

evolutionary biology more details view paper
  • Downloaded 551 times
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    • Site-wide: 32,297 out of 101,433
    • In evolutionary biology: 2,082 out of 6,044
  • Year to date:
    • Site-wide: 77,247 out of 101,433
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    • Site-wide: 63,937 out of 101,433

Porcine commensal Escherichia coli: A reservoir for class 1 integrons associated with IS26

genomics more details view paper
  • Downloaded 481 times
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    • Site-wide: 38,335 out of 101,433
    • In genomics: 3,624 out of 6,283
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    • Site-wide: 83,250 out of 101,433

Evaluation of ddRADseq for reduced representation metagenome sequencing

genomics more details view paper
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    • Site-wide: 47,197 out of 101,433
    • In genomics: 4,114 out of 6,283
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  • Since beginning of last month:
    • Site-wide: 53,032 out of 101,433

Genomes from Bacteria Associated with the Canine Oral Cavity: a Test Case for Automated Genome-Based Taxonomic Assignment

bioinformatics more details view paper
  • Downloaded 333 times
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    • Site-wide: 56,289 out of 101,433
    • In bioinformatics: 6,246 out of 9,300
  • Year to date:
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    • Site-wide: 57,303 out of 101,433

Post-weaning shifts in microbiome composition and metabolism revealed by over 25,000 pig gut metagenome assembled genomes

microbiology more details view paper
  • Downloaded 264 times
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    • Site-wide: 67,308 out of 101,433
    • In microbiology: 5,329 out of 9,013
  • Year to date:
    • Site-wide: 20,072 out of 101,433
  • Since beginning of last month:
    • Site-wide: 4,738 out of 101,433

Trial by phylogenetics - Evaluating the Multi-Species Coalescent for evolutionary inference on taxa with high levels of paralogy (Gonyaulacales, Dinophyceae).

evolutionary biology more details view paper
  • Downloaded 256 times
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    • Site-wide: 68,835 out of 101,433
    • In evolutionary biology: 4,434 out of 6,044
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  • Since beginning of last month:
    • Site-wide: 66,119 out of 101,433

Tutorial: Assessing metagenomics software with the CAMI benchmarking toolkit

bioinformatics more details view paper
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    • Site-wide: 71,335 out of 101,433
    • In bioinformatics: 7,330 out of 9,300
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    • Site-wide: 22,756 out of 101,433
  • Since beginning of last month:
    • Site-wide: 8,279 out of 101,433

Community composition and development of the post-weaning piglet gut microbiome

microbiology more details view paper
  • Downloaded 142 times
  • Download rankings, all-time:
    • Site-wide: 88,417 out of 101,433
    • In microbiology: 7,494 out of 9,013
  • Year to date:
    • Site-wide: 44,760 out of 101,433
  • Since beginning of last month:
    • Site-wide: 12,434 out of 101,433

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