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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,292 bioRxiv papers from 276,522 authors.

Author: Aaron E Darling

Rankings

  • All-time downloads: 19,539 (rank: 1,259 (tie) out of 276,522)
  • Categories:
    • bioinformatics: 13,484 (rank: 156 out of 24,276)
    • evolutionary biology: 576 (rank: 5,980 (tie) out of 15,095)
    • genomics: 1,907 (rank: 7,097 (tie) out of 31,837)
    • microbiology: 344 (rank: 12,123 (tie) out of 28,239)
    • molecular biology: 3,228 (rank: 242 (tie) out of 12,507)

Downloads per author, site-wide

Preprints

Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software

bioinformatics more details view paper
  • Downloaded 6,490 times
  • Download rankings, all-time:
    • Site-wide: 253 out of 62,292
    • In bioinformatics: 43 out of 6,225
  • Year to date:
    • Site-wide: 6,434 out of 62,292
  • Since beginning of last month:
    • Site-wide: 10,838 out of 62,292

Resolving microbial microdiversity with high accuracy full length 16S rRNA Illumina sequencing

molecular biology more details view paper
  • Downloaded 3,228 times
  • Download rankings, all-time:
    • Site-wide: 924 out of 62,292
    • In molecular biology: 20 out of 1,948
  • Year to date:
    • Site-wide: 24,967 out of 62,292
  • Since beginning of last month:
    • Site-wide: 18,164 out of 62,292

Alignathon: A competitive assessment of whole genome alignment methods.

bioinformatics more details view paper
  • Downloaded 3,096 times
  • Download rankings, all-time:
    • Site-wide: 1,004 out of 62,292
    • In bioinformatics: 207 out of 6,225
  • Year to date:
    • Site-wide: 20,734 out of 62,292
  • Since beginning of last month:
    • Site-wide: 16,693 out of 62,292

CAMISIM: Simulating metagenomes and microbial communities

bioinformatics more details view paper
  • Downloaded 1,323 times
  • Download rankings, all-time:
    • Site-wide: 4,407 out of 62,292
    • In bioinformatics: 872 out of 6,225
  • Year to date:
    • Site-wide: 3,238 out of 62,292
  • Since beginning of last month:
    • Site-wide: 9,419 out of 62,292

Hackflex: low cost Illumina sequencing library construction for high sample counts

genomics more details view paper
  • Downloaded 1,183 times
  • Download rankings, all-time:
    • Site-wide: 5,269 out of 62,292
    • In genomics: 903 out of 4,282
  • Year to date:
    • Site-wide: 1,049 out of 62,292
  • Since beginning of last month:
    • Site-wide: 23 out of 62,292

Effective Online Bayesian Phylogenetics Via Sequential Monte Carlo With Guided Proposals

bioinformatics more details view paper
  • Downloaded 684 times
  • Download rankings, all-time:
    • Site-wide: 12,381 out of 62,292
    • In bioinformatics: 2,058 out of 6,225
  • Year to date:
    • Site-wide: 36,716 out of 62,292
  • Since beginning of last month:
    • Site-wide: 28,021 out of 62,292

bin3C : Exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes (MAGs)

bioinformatics more details view paper
  • Downloaded 683 times
  • Download rankings, all-time:
    • Site-wide: 12,404 out of 62,292
    • In bioinformatics: 2,059 out of 6,225
  • Year to date:
    • Site-wide: 12,785 out of 62,292
  • Since beginning of last month:
    • Site-wide: 37,957 out of 62,292

Sim3C: Simulation Of HiC And Meta3C Proximity Ligation Sequencing Technologies

bioinformatics more details view paper
  • Downloaded 562 times
  • Download rankings, all-time:
    • Site-wide: 16,243 out of 62,292
    • In bioinformatics: 2,531 out of 6,225
  • Year to date:
    • Site-wide: 49,509 out of 62,292
  • Since beginning of last month:
    • Site-wide: 33,813 out of 62,292

The Impact of Migratory Flyways on the Spread of Avian Influenza Virus in North America

evolutionary biology more details view paper
  • Downloaded 456 times
  • Download rankings, all-time:
    • Site-wide: 21,083 out of 62,292
    • In evolutionary biology: 1,575 out of 4,210
  • Year to date:
    • Site-wide: 38,883 out of 62,292
  • Since beginning of last month:
    • Site-wide: 31,905 out of 62,292

Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics

bioinformatics more details view paper
  • Downloaded 420 times
  • Download rankings, all-time:
    • Site-wide: 23,114 out of 62,292
    • In bioinformatics: 3,297 out of 6,225
  • Year to date:
    • Site-wide: 6,201 out of 62,292
  • Since beginning of last month:
    • Site-wide: 4,843 out of 62,292

Porcine commensal Escherichia coli: A reservoir for class 1 integrons associated with IS26

genomics more details view paper
  • Downloaded 406 times
  • Download rankings, all-time:
    • Site-wide: 23,994 out of 62,292
    • In genomics: 2,595 out of 4,282
  • Year to date:
    • Site-wide: 46,109 out of 62,292
  • Since beginning of last month:
    • Site-wide: 34,630 out of 62,292

A new massively-parallel transposon mutagenesis approach comparing multiple datasets identifies novel mechanisms of action and resistance to triclosan

microbiology more details view paper
  • Downloaded 344 times
  • Download rankings, all-time:
    • Site-wide: 28,415 out of 62,292
    • In microbiology: 1,722 out of 4,992
  • Year to date:
    • Site-wide: 8,626 out of 62,292
  • Since beginning of last month:
    • Site-wide: 12,630 out of 62,292

Evaluation of ddRADseq for reduced representation metagenome sequencing

genomics more details view paper
  • Downloaded 318 times
  • Download rankings, all-time:
    • Site-wide: 30,710 out of 62,292
    • In genomics: 3,018 out of 4,282
  • Year to date:
    • Site-wide: 58,331 out of 62,292
  • Since beginning of last month:
    • Site-wide: 42,275 out of 62,292

Genomes from Bacteria Associated with the Canine Oral Cavity: a Test Case for Automated Genome-Based Taxonomic Assignment

bioinformatics more details view paper
  • Downloaded 226 times
  • Download rankings, all-time:
    • Site-wide: 40,151 out of 62,292
    • In bioinformatics: 4,770 out of 6,225
  • Year to date:
    • Site-wide: 16,246 out of 62,292
  • Since beginning of last month:
    • Site-wide: 27,294 out of 62,292

Trial by phylogenetics - Evaluating the Multi-Species Coalescent for evolutionary inference on taxa with high levels of paralogy (Gonyaulacales, Dinophyceae).

evolutionary biology more details view paper
  • Downloaded 120 times
  • Download rankings, all-time:
    • Site-wide: 53,847 out of 62,292
    • In evolutionary biology: 3,795 out of 4,210
  • Year to date:
    • Site-wide: 33,342 out of 62,292
  • Since beginning of last month:
    • Site-wide: 32,337 out of 62,292

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