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Author: Aaron E. Darling

Rankings

  • All-time downloads: 23,498 (rank: 6,172 )
  • Categories:
    • bioinformatics: 16,533 (rank: 325 )
    • evolutionary biology: 835 (rank: 7,442 (tie) )
    • genomics: 4,982 (rank: 4,346 (tie) )
    • microbiology: 1,148 (rank: 10,565 (tie) )

Downloads per author, site-wide

Preprints

Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software

bioinformatics more details view paper
  • Downloaded 6,952 times
  • Download rankings, all-time:
    • Site-wide: 1,123
    • In bioinformatics: 77
  • Year to date:
    • Site-wide: 25,682
  • Since beginning of last month:
    • Site-wide: 22,404

Hackflex: low cost Illumina sequencing library construction for high sample counts

genomics more details view paper
  • Downloaded 4,062 times
  • Download rankings, all-time:
    • Site-wide: 2,331
    • In genomics: 280
  • Year to date:
    • Site-wide: 1,999
  • Since beginning of last month:
    • Site-wide: 3,590

Alignathon: A competitive assessment of whole genome alignment methods.

bioinformatics more details view paper
  • Downloaded 3,295 times
  • Download rankings, all-time:
    • Site-wide: 3,177
    • In bioinformatics: 346
  • Year to date:
    • Site-wide: 26,587
  • Since beginning of last month:
    • Site-wide: 76,032

CAMISIM: Simulating metagenomes and microbial communities

bioinformatics more details view paper
  • Downloaded 1,741 times
  • Download rankings, all-time:
    • Site-wide: 8,035
    • In bioinformatics: 1,014
  • Year to date:
    • Site-wide: 22,272
  • Since beginning of last month:
    • Site-wide: 69,675

bin3C : Exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes (MAGs)

bioinformatics more details view paper
  • Downloaded 801 times
  • Download rankings, all-time:
    • Site-wide: 25,486
    • In bioinformatics: 3,060
  • Year to date:
    • Site-wide: 91,048
  • Since beginning of last month:
    • Site-wide: 53,453

Effective Online Bayesian Phylogenetics Via Sequential Monte Carlo With Guided Proposals

bioinformatics more details view paper
  • Downloaded 798 times
  • Download rankings, all-time:
    • Site-wide: 25,627
    • In bioinformatics: 3,069
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 120,093

Metagenomics Strain Resolution on Assembly Graphs

bioinformatics more details view paper
  • Downloaded 763 times
  • Download rankings, all-time:
    • Site-wide: 27,279
    • In bioinformatics: 3,235
  • Year to date:
    • Site-wide: 12,393
  • Since beginning of last month:
    • Site-wide: 9,000

Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics

bioinformatics more details view paper
  • Downloaded 758 times
  • Download rankings, all-time:
    • Site-wide: 27,528
    • In bioinformatics: 3,256
  • Year to date:
    • Site-wide: 103,604
  • Since beginning of last month:
    • Site-wide: 56,397

Sim3C: Simulation Of HiC And Meta3C Proximity Ligation Sequencing Technologies

bioinformatics more details view paper
  • Downloaded 662 times
  • Download rankings, all-time:
    • Site-wide: 33,139
    • In bioinformatics: 3,783
  • Year to date:
    • Site-wide: 85,888
  • Since beginning of last month:
    • Site-wide: 74,860

A new massively-parallel transposon mutagenesis approach comparing multiple datasets identifies novel mechanisms of action and resistance to triclosan

microbiology more details view paper
  • Downloaded 622 times
  • Download rankings, all-time:
    • Site-wide: 35,933
    • In microbiology: 2,160
  • Year to date:
    • Site-wide: 45,175
  • Since beginning of last month:
    • Site-wide: 40,750

The Impact of Migratory Flyways on the Spread of Avian Influenza Virus in North America

evolutionary biology more details view paper
  • Downloaded 562 times
  • Download rankings, all-time:
    • Site-wide: 40,865
    • In evolutionary biology: 2,232
  • Year to date:
    • Site-wide: 117,858
  • Since beginning of last month:
    • Site-wide: 102,843

Porcine commensal Escherichia coli: A reservoir for class 1 integrons associated with IS26

genomics more details view paper
  • Downloaded 506 times
  • Download rankings, all-time:
    • Site-wide: 46,375
    • In genomics: 3,753
  • Year to date:
    • Site-wide: 53,018
  • Since beginning of last month:
    • Site-wide: 103,667

Evaluation of ddRADseq for reduced representation metagenome sequencing

genomics more details view paper
  • Downloaded 414 times
  • Download rankings, all-time:
    • Site-wide: 57,732
    • In genomics: 4,341
  • Year to date:
    • Site-wide: 107,671
  • Since beginning of last month:
    • Site-wide: 116,520

Tutorial: Assessing metagenomics software with the CAMI benchmarking toolkit

bioinformatics more details view paper
  • Downloaded 403 times
  • Download rankings, all-time:
    • Site-wide: 59,263
    • In bioinformatics: 5,968
  • Year to date:
    • Site-wide: 8,814
  • Since beginning of last month:
    • Site-wide: 11,816

Genomes from Bacteria Associated with the Canine Oral Cavity: a Test Case for Automated Genome-Based Taxonomic Assignment

bioinformatics more details view paper
  • Downloaded 360 times
  • Download rankings, all-time:
    • Site-wide: 65,979
    • In bioinformatics: 6,448
  • Year to date:
    • Site-wide: 80,028
  • Since beginning of last month:
    • Site-wide: 58,105

Post-weaning shifts in microbiome composition and metabolism revealed by over 25,000 pig gut metagenome assembled genomes

microbiology more details view paper
  • Downloaded 340 times
  • Download rankings, all-time:
    • Site-wide: 69,402
    • In microbiology: 4,790
  • Year to date:
    • Site-wide: 9,631
  • Since beginning of last month:
    • Site-wide: 34,265

Trial by phylogenetics - Evaluating the Multi-Species Coalescent for evolutionary inference on taxa with high levels of paralogy (Gonyaulacales, Dinophyceae).

evolutionary biology more details view paper
  • Downloaded 273 times
  • Download rankings, all-time:
    • Site-wide: 81,942
    • In evolutionary biology: 4,571
  • Year to date:
    • Site-wide: 57,410
  • Since beginning of last month:
    • Site-wide: 118,697

Community composition and development of the post-weaning piglet gut microbiome

microbiology more details view paper
  • Downloaded 186 times
  • Download rankings, all-time:
    • Site-wide: 100,323
    • In microbiology: 7,523
  • Year to date:
    • Site-wide: 57,740
  • Since beginning of last month:
    • Site-wide: 67,270

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