Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 60,240 bioRxiv papers from 267,843 authors.

Author: Stephen R. Quake

Rankings

  • All-time downloads: 58,626 (rank: 200 out of 268,131)
  • Categories:
    • bioengineering: 1,101 (rank: 833 (tie) out of 6,537)
    • bioinformatics: 2,764 (rank: 2,341 (tie) out of 23,906)
    • cancer biology: 2,349 (rank: 681 out of 16,314)
    • cell biology: 16,083 (rank: 4 (tie) out of 17,625)
    • developmental biology: 239 (rank: 6,628 (tie) out of 10,037)
    • genetics: 1,494 (rank: 7,258 (tie) out of 27,088)
    • genomics: 13,716 (rank: 575 out of 31,268)
    • immunology: 7,710 (rank: 55 out of 11,908)
    • microbiology: 4,983 (rank: 144 out of 27,515)
    • molecular biology: 256 (rank: 7,484 (tie) out of 12,089)
    • neuroscience: 6,264 (rank: 753 out of 44,118)
    • systems biology: 1,667 (rank: 893 (tie) out of 8,158)

Downloads per author, site-wide

Preprints

Single-cell transcriptomic characterization of 20 organs and tissues from individual mice creates a Tabula Muris

cell biology more details view paper
  • Downloaded 11,615 times
  • Download rankings, all-time:
    • Site-wide: 79 out of 60,323
    • In cell biology: 3 out of 2,865
  • Year to date:
    • Site-wide: 596 out of 60,323
  • Since beginning of last month:
    • Site-wide: 1,521 out of 60,323

A Single Cell Transcriptomic Atlas Characterizes Aging Tissues in the Mouse

cell biology more details view paper
  • Downloaded 2,983 times
  • Download rankings, all-time:
    • Site-wide: 1,050 out of 60,323
    • In cell biology: 31 out of 2,865
  • Year to date:
    • Site-wide: 159 out of 60,323
  • Since beginning of last month:
    • Site-wide: 142 out of 60,323

Classifying Drosophila Olfactory Projection Neuron Subtypes by Single-cell RNA Sequencing

genomics more details view paper
  • Downloaded 2,567 times
  • Download rankings, all-time:
    • Site-wide: 1,375 out of 60,323
    • In genomics: 322 out of 4,181
  • Year to date:
    • Site-wide: 16,034 out of 60,323
  • Since beginning of last month:
    • Site-wide: 16,349 out of 60,323

Developmental heterogeneity of microglia and brain myeloid cells revealed by deep single-cell RNA sequencing

neuroscience more details view paper
  • Downloaded 2,324 times
  • Download rankings, all-time:
    • Site-wide: 1,651 out of 60,323
    • In neuroscience: 234 out of 10,664
  • Year to date:
    • Site-wide: 1,100 out of 60,323
  • Since beginning of last month:
    • Site-wide: 2,464 out of 60,323

A molecular cell atlas of the human lung from single cell RNA sequencing

genomics more details view paper
  • Downloaded 2,229 times
  • Download rankings, all-time:
    • Site-wide: 1,767 out of 60,323
    • In genomics: 394 out of 4,181
  • Year to date:
    • Site-wide: 266 out of 60,323
  • Since beginning of last month:
    • Site-wide: 15 out of 60,323

The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude

genomics more details view paper
  • Downloaded 1,880 times
  • Download rankings, all-time:
    • Site-wide: 2,399 out of 60,323
    • In genomics: 504 out of 4,181
  • Year to date:
    • Site-wide: 385 out of 60,323
  • Since beginning of last month:
    • Site-wide: 942 out of 60,323

Single cell transcriptome analysis of human pancreas reveals transcriptional signatures of aging and somatic mutation patterns.

genomics more details view paper
  • Downloaded 1,686 times
  • Download rankings, all-time:
    • Site-wide: 2,892 out of 60,323
    • In genomics: 579 out of 4,181
  • Year to date:
    • Site-wide: 24,811 out of 60,323
  • Since beginning of last month:
    • Site-wide: 39,160 out of 60,323

Single-cell RNA-seq reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress

systems biology more details view paper
  • Downloaded 1,667 times
  • Download rankings, all-time:
    • Site-wide: 2,953 out of 60,323
    • In systems biology: 74 out of 1,713
  • Year to date:
    • Site-wide: 35,397 out of 60,323
  • Since beginning of last month:
    • Site-wide: 32,575 out of 60,323

Self-assembling Manifolds in Single-cell RNA Sequencing Data

bioinformatics more details view paper
  • Downloaded 1,560 times
  • Download rankings, all-time:
    • Site-wide: 3,277 out of 60,323
    • In bioinformatics: 659 out of 6,082
  • Year to date:
    • Site-wide: 2,381 out of 60,323
  • Since beginning of last month:
    • Site-wide: 2,057 out of 60,323

Serotonin Neurons in the Dorsal and Medial Raphe Nuclei: from Single-Cell Transcriptomes to Whole-Brain Projections

neuroscience more details view paper
  • Downloaded 1,525 times
  • Download rankings, all-time:
    • Site-wide: 3,411 out of 60,323
    • In neuroscience: 519 out of 10,664
  • Year to date:
    • Site-wide: 585 out of 60,323
  • Since beginning of last month:
    • Site-wide: 601 out of 60,323

Nonivasive prenatal diagnosis of single-gene disorders using droplet digital PCR

genetics more details view paper
  • Downloaded 1,494 times
  • Download rankings, all-time:
    • Site-wide: 3,538 out of 60,323
    • In genetics: 312 out of 3,437
  • Year to date:
    • Site-wide: 7,099 out of 60,323
  • Since beginning of last month:
    • Site-wide: 13,337 out of 60,323

Single-cell analysis identifies EpCAM+/CDH6+/TROP-2- cells as human liver progenitors.

cell biology more details view paper
  • Downloaded 1,485 times
  • Download rankings, all-time:
    • Site-wide: 3,575 out of 60,323
    • In cell biology: 96 out of 2,865
  • Year to date:
    • Site-wide: 3,303 out of 60,323
  • Since beginning of last month:
    • Site-wide: 14,734 out of 60,323

Pancreas patch-seq links physiologic dysfunction in diabetes to single-cell transcriptomic phenotypes

genomics more details view paper
  • Downloaded 1,461 times
  • Download rankings, all-time:
    • Site-wide: 3,672 out of 60,323
    • In genomics: 689 out of 4,181
  • Year to date:
    • Site-wide: 640 out of 60,323
  • Since beginning of last month:
    • Site-wide: 1,415 out of 60,323

Humans are colonized by many uncharacterized and highly divergent microbes

microbiology more details view paper
  • Downloaded 1,457 times
  • Download rankings, all-time:
    • Site-wide: 3,680 out of 60,323
    • In microbiology: 112 out of 4,826
  • Year to date:
    • Site-wide: 43,670 out of 60,323
  • Since beginning of last month:
    • Site-wide: 58,826 out of 60,323

Detection of early stage pancreatic cancer using 5-hydroxymethylcytosine signatures in circulating cell free DNA

cancer biology more details view paper
  • Downloaded 1,438 times
  • Download rankings, all-time:
    • Site-wide: 3,771 out of 60,323
    • In cancer biology: 91 out of 1,975
  • Year to date:
    • Site-wide: 4,249 out of 60,323
  • Since beginning of last month:
    • Site-wide: 5,186 out of 60,323

Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples

microbiology more details view paper
  • Downloaded 1,378 times
  • Download rankings, all-time:
    • Site-wide: 4,053 out of 60,323
    • In microbiology: 126 out of 4,826
  • Year to date:
    • Site-wide: 37,953 out of 60,323
  • Since beginning of last month:
    • Site-wide: 40,177 out of 60,323

Human IgE producing B cells have a unique transcriptional program and generate high affinity, allergen-specific antibodies

immunology more details view paper
  • Downloaded 1,345 times
  • Download rankings, all-time:
    • Site-wide: 4,206 out of 60,323
    • In immunology: 50 out of 1,480
  • Year to date:
    • Site-wide: 3,589 out of 60,323
  • Since beginning of last month:
    • Site-wide: 8,670 out of 60,323

Single cell RNAseq provides a molecular and cellular cartography of changes to the human endometrium through the menstrual cycle

genomics more details view paper
  • Downloaded 1,343 times
  • Download rankings, all-time:
    • Site-wide: 4,212 out of 60,323
    • In genomics: 772 out of 4,181
  • Year to date:
    • Site-wide: 2,366 out of 60,323
  • Since beginning of last month:
    • Site-wide: 2,406 out of 60,323

c-Jun Overexpressing CAR-T Cells are Exhaustion-Resistant and Mediate Enhanced Antitumor Activity

immunology more details view paper
  • Downloaded 1,261 times
  • Download rankings, all-time:
    • Site-wide: 4,657 out of 60,323
    • In immunology: 54 out of 1,480
  • Year to date:
    • Site-wide: 839 out of 60,323
  • Since beginning of last month:
    • Site-wide: 286 out of 60,323

Aging-related inflammation driven by cellular senescence enhances NAD consumption via activation of CD38+ macrophages

immunology more details view paper
  • Downloaded 1,250 times
  • Download rankings, all-time:
    • Site-wide: 4,724 out of 60,323
    • In immunology: 57 out of 1,480
  • Year to date:
    • Site-wide: 859 out of 60,323
  • Since beginning of last month:
    • Site-wide: 508 out of 60,323

Single-cell transcriptional dynamics of flavivirus infection

microbiology more details view paper
  • Downloaded 1,203 times
  • Download rankings, all-time:
    • Site-wide: 5,022 out of 60,323
    • In microbiology: 175 out of 4,826
  • Year to date:
    • Site-wide: 27,157 out of 60,323
  • Since beginning of last month:
    • Site-wide: 35,822 out of 60,323

Signatures of Selection in the Human Antibody Repertoire: Selective Sweeps, Competing Subclones, and Neutral Drift

immunology more details view paper
  • Downloaded 948 times
  • Download rankings, all-time:
    • Site-wide: 7,417 out of 60,323
    • In immunology: 107 out of 1,480
  • Year to date:
    • Site-wide: 48,572 out of 60,323
  • Since beginning of last month:
    • Site-wide: 44,048 out of 60,323

Brain endothelial cells are exquisite sensors of age-related circulatory cues

neuroscience more details view paper
  • Downloaded 937 times
  • Download rankings, all-time:
    • Site-wide: 7,551 out of 60,323
    • In neuroscience: 1,163 out of 10,664
  • Year to date:
    • Site-wide: 1,455 out of 60,323
  • Since beginning of last month:
    • Site-wide: 998 out of 60,323

5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages

genomics more details view paper
  • Downloaded 931 times
  • Download rankings, all-time:
    • Site-wide: 7,636 out of 60,323
    • In genomics: 1,204 out of 4,181
  • Year to date:
    • Site-wide: 36,115 out of 60,323
  • Since beginning of last month:
    • Site-wide: 29,745 out of 60,323

Single-Cell RNAseq analysis of infiltrating neoplastic cells at the migrating front of human glioblastoma

cancer biology more details view paper
  • Downloaded 911 times
  • Download rankings, all-time:
    • Site-wide: 7,917 out of 60,323
    • In cancer biology: 211 out of 1,975
  • Year to date:
    • Site-wide: 40,148 out of 60,323
  • Since beginning of last month:
    • Site-wide: 35,355 out of 60,323

PhaMers identifies novel bacteriophage sequences from thermophilic hot springs

bioinformatics more details view paper
  • Downloaded 830 times
  • Download rankings, all-time:
    • Site-wide: 9,179 out of 60,323
    • In bioinformatics: 1,613 out of 6,082
  • Year to date:
    • Site-wide: 20,780 out of 60,323
  • Since beginning of last month:
    • Site-wide: 19,686 out of 60,323

Dynamics Of The Human Antibody Repertoire Following B-cell Depletion In Systemic Sclerosis

immunology more details view paper
  • Downloaded 802 times
  • Download rankings, all-time:
    • Site-wide: 9,662 out of 60,323
    • In immunology: 151 out of 1,480
  • Year to date:
    • Site-wide: 41,190 out of 60,323
  • Since beginning of last month:
    • Site-wide: 46,094 out of 60,323

A mouse tissue atlas of small non-coding RNA

genomics more details view paper
  • Downloaded 764 times
  • Download rankings, all-time:
    • Site-wide: 10,379 out of 60,323
    • In genomics: 1,499 out of 4,181
  • Year to date:
    • Site-wide: 6,503 out of 60,323
  • Since beginning of last month:
    • Site-wide: 11,313 out of 60,323

Coordinating Receptor Expression and Wiring Specificity in Olfactory Receptor Neurons

neuroscience more details view paper
  • Downloaded 741 times
  • Download rankings, all-time:
    • Site-wide: 10,834 out of 60,323
    • In neuroscience: 1,710 out of 10,664
  • Year to date:
    • Site-wide: 2,198 out of 60,323
  • Since beginning of last month:
    • Site-wide: 4,554 out of 60,323

Discrete and Continuous Cell Identities of the Adult Murine Striatum

neuroscience more details view paper
  • Downloaded 737 times
  • Download rankings, all-time:
    • Site-wide: 10,910 out of 60,323
    • In neuroscience: 1,722 out of 10,664
  • Year to date:
    • Site-wide: 2,215 out of 60,323
  • Since beginning of last month:
    • Site-wide: 2,977 out of 60,323

Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens

microbiology more details view paper
  • Downloaded 736 times
  • Download rankings, all-time:
    • Site-wide: 10,942 out of 60,323
    • In microbiology: 490 out of 4,826
  • Year to date:
    • Site-wide: 15,646 out of 60,323
  • Since beginning of last month:
    • Site-wide: 28,152 out of 60,323

Virus-inclusive single cell RNA sequencing reveals molecular signature predictive of progression to severe dengue infection

immunology more details view paper
  • Downloaded 731 times
  • Download rankings, all-time:
    • Site-wide: 11,047 out of 60,323
    • In immunology: 172 out of 1,480
  • Year to date:
    • Site-wide: 20,171 out of 60,323
  • Since beginning of last month:
    • Site-wide: 31,935 out of 60,323

A Noninvasive Molecular Clock for Fetal Development Predicts Gestational Age and Preterm Delivery

bioengineering more details view paper
  • Downloaded 665 times
  • Download rankings, all-time:
    • Site-wide: 12,668 out of 60,323
    • In bioengineering: 204 out of 1,175
  • Year to date:
    • Site-wide: 34,100 out of 60,323
  • Since beginning of last month:
    • Site-wide: 41,142 out of 60,323

Evolutionary Origin of the Mammalian Hematopoietic System Found in a Colonial Chordate

immunology more details view paper
  • Downloaded 655 times
  • Download rankings, all-time:
    • Site-wide: 12,937 out of 60,323
    • In immunology: 212 out of 1,480
  • Year to date:
    • Site-wide: 14,055 out of 60,323
  • Since beginning of last month:
    • Site-wide: 28,161 out of 60,323

Nucleic Acid Cleavage with a Hyperthermophilic Cas9 from an Unculturable Ignavibacterium

genomics more details view paper
  • Downloaded 519 times
  • Download rankings, all-time:
    • Site-wide: 17,647 out of 60,323
    • In genomics: 2,158 out of 4,181
  • Year to date:
    • Site-wide: 4,073 out of 60,323
  • Since beginning of last month:
    • Site-wide: 7,855 out of 60,323

A single-parasite transcriptional landscape of asexual development in Toxoplasma gondii

bioengineering more details view paper
  • Downloaded 436 times
  • Download rankings, all-time:
    • Site-wide: 21,709 out of 60,323
    • In bioengineering: 369 out of 1,175
  • Year to date:
    • Site-wide: 5,437 out of 60,323
  • Since beginning of last month:
    • Site-wide: 15,011 out of 60,323

Transcriptional program of memory B cell activation, broadly binding anti-influenza antibodies, and bystander activation after vaccination revealed by single-cell transcriptomics

immunology more details view paper
  • Downloaded 395 times
  • Download rankings, all-time:
    • Site-wide: 24,175 out of 60,323
    • In immunology: 433 out of 1,480
  • Year to date:
    • Site-wide: 6,362 out of 60,323
  • Since beginning of last month:
    • Site-wide: 2,492 out of 60,323

Modeling Spatial Correlation of Transcripts With Application to Developing Pancreas

bioinformatics more details view paper
  • Downloaded 374 times
  • Download rankings, all-time:
    • Site-wide: 25,640 out of 60,323
    • In bioinformatics: 3,529 out of 6,082
  • Year to date:
    • Site-wide: 27,947 out of 60,323
  • Since beginning of last month:
    • Site-wide: 40,850 out of 60,323

Viral Taxonomy Derived From Evolutionary Genome Relationships

genomics more details view paper
  • Downloaded 336 times
  • Download rankings, all-time:
    • Site-wide: 28,466 out of 60,323
    • In genomics: 2,853 out of 4,181
  • Year to date:
    • Site-wide: 25,480 out of 60,323
  • Since beginning of last month:
    • Site-wide: 34,764 out of 60,323

Matrix-corrected mass spectrometry enables sensitive detection of food allergens and reveals widespread soy contamination of processed foods

immunology more details view paper
  • Downloaded 323 times
  • Download rankings, all-time:
    • Site-wide: 29,570 out of 60,323
    • In immunology: 558 out of 1,480
  • Year to date:
    • Site-wide: 43,252 out of 60,323
  • Since beginning of last month:
    • Site-wide: 39,932 out of 60,323

Non-invasive characterization of human bone marrow by cell free messenger-RNA reveals response to growth factor stimulation and hematopoietic reconstitution after transplantation

molecular biology more details view paper
  • Downloaded 256 times
  • Download rankings, all-time:
    • Site-wide: 36,020 out of 60,323
    • In molecular biology: 1,052 out of 1,862
  • Year to date:
    • Site-wide: 12,789 out of 60,323
  • Since beginning of last month:
    • Site-wide: 25,623 out of 60,323

Molecular and genetic regulation of pig pancreatic islet cell development

developmental biology more details view paper
  • Downloaded 239 times
  • Download rankings, all-time:
    • Site-wide: 37,830 out of 60,323
    • In developmental biology: 1,117 out of 1,793
  • Year to date:
    • Site-wide: 14,079 out of 60,323
  • Since beginning of last month:
    • Site-wide: 1,812 out of 60,323

Cell-free DNA Reveals Potential Zoonotic Reservoirs in Non-Human Primates

microbiology more details view paper
  • Downloaded 209 times
  • Download rankings, all-time:
    • Site-wide: 41,353 out of 60,323
    • In microbiology: 2,797 out of 4,826
  • Year to date:
    • Site-wide: 29,570 out of 60,323
  • Since beginning of last month:
    • Site-wide: 32,462 out of 60,323

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News