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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 65,351 bioRxiv papers from 289,484 authors.

Author: Stephen R. Quake

Rankings

  • All-time downloads: 67,046 (rank: 180 out of 289,484)
  • Categories:
    • bioengineering: 1,187 (rank: 876 out of 7,232)
    • bioinformatics: 3,247 (rank: 2,089 (tie) out of 25,220)
    • biophysics: 165 (rank: 9,580 (tie) out of 11,324)
    • cancer biology: 2,460 (rank: 728 out of 18,052)
    • cell biology: 17,121 (rank: 4 (tie) out of 19,345)
    • developmental biology: 565 (rank: 3,081 (tie) out of 10,836)
    • genetics: 1,541 (rank: 7,488 (tie) out of 28,760)
    • genomics: 16,207 (rank: 416 out of 32,929)
    • immunology: 8,855 (rank: 50 out of 13,364)
    • microbiology: 5,265 (rank: 148 out of 29,719)
    • molecular biology: 285 (rank: 7,745 (tie) out of 13,667)
    • neuroscience: 8,459 (rank: 517 out of 48,177)
    • systems biology: 1,689 (rank: 954 (tie) out of 8,770)

Downloads per author, site-wide

Preprints

Single-cell transcriptomic characterization of 20 organs and tissues from individual mice creates a Tabula Muris

cell biology more details view paper
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    • In cell biology: 2 out of 3,142
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    • Site-wide: 614 out of 65,351
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A molecular cell atlas of the human lung from single cell RNA sequencing

genomics more details view paper
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    • In genomics: 182 out of 4,462
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A Single Cell Transcriptomic Atlas Characterizes Aging Tissues in the Mouse

cell biology more details view paper
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    • In cell biology: 24 out of 3,142
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    • Site-wide: 244 out of 65,351

Classifying Drosophila Olfactory Projection Neuron Subtypes by Single-cell RNA Sequencing

genomics more details view paper
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Developmental heterogeneity of microglia and brain myeloid cells revealed by deep single-cell RNA sequencing

neuroscience more details view paper
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The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude

genomics more details view paper
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c-Jun Overexpressing CAR-T Cells are Exhaustion-Resistant and Mediate Enhanced Antitumor Activity

immunology more details view paper
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    • In immunology: 31 out of 1,660
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    • Site-wide: 269 out of 65,351

Serotonin Neurons in the Dorsal and Medial Raphe Nuclei: from Single-Cell Transcriptomes to Whole-Brain Projections

neuroscience more details view paper
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    • In neuroscience: 437 out of 11,715
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    • Site-wide: 1,291 out of 65,351

Single cell transcriptome analysis of human pancreas reveals transcriptional signatures of aging and somatic mutation patterns.

genomics more details view paper
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    • In genomics: 608 out of 4,462
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    • Site-wide: 28,267 out of 65,351
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    • Site-wide: 45,258 out of 65,351

Single-cell RNA-seq reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress

systems biology more details view paper
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    • In systems biology: 77 out of 1,836
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Pancreas patch-seq links physiologic dysfunction in diabetes to single-cell transcriptomic phenotypes

genomics more details view paper
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    • In genomics: 613 out of 4,462
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    • Site-wide: 1,901 out of 65,351

Self-assembling Manifolds in Single-cell RNA Sequencing Data

bioinformatics more details view paper
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    • In bioinformatics: 662 out of 6,476
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Nonivasive prenatal diagnosis of single-gene disorders using droplet digital PCR

genetics more details view paper
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    • In genetics: 313 out of 3,698
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Single-cell analysis identifies EpCAM+/CDH6+/TROP-2- cells as human liver progenitors.

cell biology more details view paper
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    • In cell biology: 104 out of 3,142
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Detection of early stage pancreatic cancer using 5-hydroxymethylcytosine signatures in circulating cell free DNA

cancer biology more details view paper
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    • In cancer biology: 90 out of 2,179
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Aging-related inflammation driven by cellular senescence enhances NAD consumption via activation of CD38+ macrophages

immunology more details view paper
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Single cell RNAseq provides a molecular and cellular cartography of changes to the human endometrium through the menstrual cycle

genomics more details view paper
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    • In genomics: 701 out of 4,462
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Humans are colonized by many uncharacterized and highly divergent microbes

microbiology more details view paper
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    • In microbiology: 118 out of 5,258
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Human IgE producing B cells have a unique transcriptional program and generate high affinity, allergen-specific antibodies

immunology more details view paper
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    • In immunology: 58 out of 1,660
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Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples

microbiology more details view paper
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    • In microbiology: 139 out of 5,258
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    • Site-wide: 40,056 out of 65,351

Single-cell transcriptional dynamics of flavivirus infection

microbiology more details view paper
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    • In microbiology: 199 out of 5,258
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Brain endothelial cells are exquisite sensors of age-related circulatory cues

neuroscience more details view paper
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    • In neuroscience: 855 out of 11,715
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    • Site-wide: 1,211 out of 65,351

Signatures of Selection in the Human Antibody Repertoire: Selective Sweeps, Competing Subclones, and Neutral Drift

immunology more details view paper
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    • In immunology: 126 out of 1,660
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    • Site-wide: 62,751 out of 65,351

5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages

genomics more details view paper
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    • In genomics: 1,286 out of 4,462
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Single-Cell RNAseq analysis of infiltrating neoplastic cells at the migrating front of human glioblastoma

cancer biology more details view paper
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    • In cancer biology: 230 out of 2,179
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Cell-Surface Proteomic Profiling in the Fly Brain Uncovers New Wiring Regulators

neuroscience more details view paper
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    • In neuroscience: 1,419 out of 11,715
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PhaMers identifies novel bacteriophage sequences from thermophilic hot springs

bioinformatics more details view paper
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    • In bioinformatics: 1,643 out of 6,476
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    • Site-wide: 30,589 out of 65,351

Coordinating Receptor Expression and Wiring Specificity in Olfactory Receptor Neurons

neuroscience more details view paper
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    • In neuroscience: 1,511 out of 11,715
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    • Site-wide: 6,177 out of 65,351

A mouse tissue atlas of small non-coding RNA

genomics more details view paper
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    • In genomics: 1,460 out of 4,462
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    • Site-wide: 11,819 out of 65,351

Discrete and Continuous Cell Identities of the Adult Murine Striatum

neuroscience more details view paper
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    • In neuroscience: 1,533 out of 11,715
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    • Site-wide: 6,301 out of 65,351

Dynamics Of The Human Antibody Repertoire Following B-cell Depletion In Systemic Sclerosis

immunology more details view paper
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    • In immunology: 168 out of 1,660
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Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens

microbiology more details view paper
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Virus-inclusive single cell RNA sequencing reveals molecular signature predictive of progression to severe dengue infection

immunology more details view paper
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Evolutionary Origin of the Mammalian Hematopoietic System Found in a Colonial Chordate

immunology more details view paper
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A Noninvasive Molecular Clock for Fetal Development Predicts Gestational Age and Preterm Delivery

bioengineering more details view paper
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    • In bioengineering: 227 out of 1,316
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Nucleic Acid Cleavage with a Hyperthermophilic Cas9 from an Unculturable Ignavibacterium

genomics more details view paper
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A single-parasite transcriptional landscape of asexual development in Toxoplasma gondii

bioengineering more details view paper
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    • In bioengineering: 349 out of 1,316
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    • Site-wide: 9,588 out of 65,351

Transcriptional program of memory B cell activation, broadly binding anti-influenza antibodies, and bystander activation after vaccination revealed by single-cell transcriptomics

immunology more details view paper
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Persistent transcriptional programs are associated with remote memory in diverse cells of the medial prefrontal cortex

neuroscience more details view paper
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    • In neuroscience: 4,619 out of 11,715
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    • Site-wide: 1,331 out of 65,351

Modeling Spatial Correlation of Transcripts With Application to Developing Pancreas

bioinformatics more details view paper
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    • In bioinformatics: 3,692 out of 6,476
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Molecular and genetic regulation of pig pancreatic islet cell development

developmental biology more details view paper
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northstar: leveraging cell atlases to identify healthy and neoplastic cells in transcriptomes from human tumors

bioinformatics more details view paper
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    • Site-wide: 502 out of 65,351

Viral Taxonomy Derived From Evolutionary Genome Relationships

genomics more details view paper
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    • Site-wide: 43,186 out of 65,351

Matrix-corrected mass spectrometry enables sensitive detection of food allergens and reveals widespread soy contamination of processed foods

immunology more details view paper
  • Downloaded 342 times
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    • In immunology: 609 out of 1,660
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    • Site-wide: 34,211 out of 65,351

Non-invasive characterization of human bone marrow by cell free messenger-RNA reveals response to growth factor stimulation and hematopoietic reconstitution after transplantation

molecular biology more details view paper
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    • Site-wide: 22,362 out of 65,351

Cell-free DNA Reveals Potential Zoonotic Reservoirs in Non-Human Primates

microbiology more details view paper
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Molecular and Morphological Signatures of Chordate Development: Two Distinct Pathways, One Tunicate

developmental biology more details view paper
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    • Site-wide: 1,491 out of 65,351

Functional characterization and lineage analysis of broadly neutralizing human antibodies against dengue virus identified by single B cell transcriptomics

microbiology more details view paper
  • Downloaded 186 times
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    • In microbiology: 3,436 out of 5,258
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    • Site-wide: 1,547 out of 65,351

A T cell behavioral manifold couples speed and turning to create heterogeneity in vivo

biophysics more details view paper
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