Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 71,082 bioRxiv papers from 310,116 authors.

Author: Julien Gagneur

Rankings

  • All-time downloads: 23,515 (rank: 1,119 out of 310,009)
  • Categories:
    • bioinformatics: 7,112 (rank: 642 out of 26,989)
    • genetics: 2,770 (rank: 4,958 (tie) out of 30,682)
    • genomics: 8,977 (rank: 1,311 out of 34,924)
    • molecular biology: 407 (rank: 6,533 (tie) out of 15,176)
    • systems biology: 4,249 (rank: 292 (tie) out of 9,359)

Downloads per author, site-wide

Preprints

A deep proteome and transcriptome abundance atlas of 29 healthy human tissues

systems biology more details view paper
  • Downloaded 3,573 times
  • Download rankings, all-time:
    • Site-wide: 910 out of 71,063
    • In systems biology: 20 out of 1,956
  • Year to date:
    • Site-wide: 7,000 out of 71,063
  • Since beginning of last month:
    • Site-wide: 8,888 out of 71,063

Accurate promoter and enhancer identification in 127 ENCODE and Roadmap Epigenomics cell types and tissues by GenoSTAN

genomics more details view paper
  • Downloaded 2,986 times
  • Download rankings, all-time:
    • Site-wide: 1,268 out of 71,063
    • In genomics: 292 out of 4,739
  • Year to date:
    • Site-wide: 6,949 out of 71,063
  • Since beginning of last month:
    • Site-wide: 13,221 out of 71,063

Kipoi: accelerating the community exchange and reuse of predictive models for genomics

bioinformatics more details view paper
  • Downloaded 2,954 times
  • Download rankings, all-time:
    • Site-wide: 1,298 out of 71,063
    • In bioinformatics: 255 out of 6,946
  • Year to date:
    • Site-wide: 8,372 out of 71,063
  • Since beginning of last month:
    • Site-wide: 4,703 out of 71,063

Deep learning at base-resolution reveals motif syntax of the cis-regulatory code

genomics more details view paper
  • Downloaded 2,763 times
  • Download rankings, all-time:
    • Site-wide: 1,446 out of 71,063
    • In genomics: 329 out of 4,739
  • Year to date:
    • Site-wide: 723 out of 71,063
  • Since beginning of last month:
    • Site-wide: 515 out of 71,063

Genetic diagnosis of Mendelian disorders via RNA sequencing

genetics more details view paper
  • Downloaded 2,140 times
  • Download rankings, all-time:
    • Site-wide: 2,304 out of 71,063
    • In genetics: 211 out of 3,935
  • Year to date:
    • Site-wide: 27,957 out of 71,063
  • Since beginning of last month:
    • Site-wide: 25,724 out of 71,063

Cis-regulatory elements explain most of the mRNA stability variation across genes in yeast

genomics more details view paper
  • Downloaded 1,737 times
  • Download rankings, all-time:
    • Site-wide: 3,294 out of 71,063
    • In genomics: 634 out of 4,739
  • Year to date:
    • Site-wide: 17,128 out of 71,063
  • Since beginning of last month:
    • Site-wide: 29,352 out of 71,063

GenoGAM: Genome-wide generalized additive models for ChIP-seq analysis

bioinformatics more details view paper
  • Downloaded 1,394 times
  • Download rankings, all-time:
    • Site-wide: 4,805 out of 71,063
    • In bioinformatics: 916 out of 6,946
  • Year to date:
    • Site-wide: 51,512 out of 71,063
  • Since beginning of last month:
    • Site-wide: 20,065 out of 71,063

OUTRIDER: A statistical method for detecting aberrantly expressed genes in RNA sequencing data

bioinformatics more details view paper
  • Downloaded 1,143 times
  • Download rankings, all-time:
    • Site-wide: 6,693 out of 71,063
    • In bioinformatics: 1,231 out of 6,946
  • Year to date:
    • Site-wide: 33,473 out of 71,063
  • Since beginning of last month:
    • Site-wide: 37,805 out of 71,063

Modular modeling improves the predictions of genetic variant effects on splicing

genomics more details view paper
  • Downloaded 837 times
  • Download rankings, all-time:
    • Site-wide: 11,092 out of 71,063
    • In genomics: 1,603 out of 4,739
  • Year to date:
    • Site-wide: 27,354 out of 71,063
  • Since beginning of last month:
    • Site-wide: 14,064 out of 71,063

Quantification and discovery of sequence determinants of protein per mRNA amount in 29 human tissues

systems biology more details view paper
  • Downloaded 676 times
  • Download rankings, all-time:
    • Site-wide: 15,116 out of 71,063
    • In systems biology: 434 out of 1,956
  • Year to date:
    • Site-wide: 16,700 out of 71,063
  • Since beginning of last month:
    • Site-wide: 36,060 out of 71,063

Determinants of RNA metabolism in the Schizosaccharomyces pombe genome

genomics more details view paper
  • Downloaded 654 times
  • Download rankings, all-time:
    • Site-wide: 15,859 out of 71,063
    • In genomics: 2,023 out of 4,739
  • Year to date:
    • Site-wide: 56,005 out of 71,063
  • Since beginning of last month:
    • Site-wide: 41,778 out of 71,063

Meiotic interactors of a mitotic gene TAO3 revealed by functional analysis of its rare variant

genetics more details view paper
  • Downloaded 630 times
  • Download rankings, all-time:
    • Site-wide: 16,772 out of 71,063
    • In genetics: 1,139 out of 3,935
  • Year to date:
    • Site-wide: 40,878 out of 71,063
  • Since beginning of last month:
    • Site-wide: 43,472 out of 71,063

OCR-Stats: Robust estimation and statistical testing of mitochondrial respiration activities using Seahorse XF Analyzer

bioinformatics more details view paper
  • Downloaded 619 times
  • Download rankings, all-time:
    • Site-wide: 17,194 out of 71,063
    • In bioinformatics: 2,638 out of 6,946
  • Year to date:
    • Site-wide: 30,193 out of 71,063
  • Since beginning of last month:
    • Site-wide: 12,593 out of 71,063

Modeling positional effects of regulatory sequences with spline transformations increases prediction accuracy of deep neural networks

bioinformatics more details view paper
  • Downloaded 541 times
  • Download rankings, all-time:
    • Site-wide: 20,655 out of 71,063
    • In bioinformatics: 3,012 out of 6,946
  • Year to date:
    • Site-wide: 54,681 out of 71,063
  • Since beginning of last month:
    • Site-wide: 30,588 out of 71,063

Transient transcriptome sequencing: computational pipeline to quantify genome-wide RNA kinetic parameters and transcriptional enhancer activity

molecular biology more details view paper
  • Downloaded 407 times
  • Download rankings, all-time:
    • Site-wide: 29,095 out of 71,063
    • In molecular biology: 852 out of 2,281
  • Year to date:
    • Site-wide: 9,635 out of 71,063
  • Since beginning of last month:
    • Site-wide: 7,421 out of 71,063

Detection of aberrant splicing events in RNA-seq data with FRASER

bioinformatics more details view paper
  • Downloaded 315 times
  • Download rankings, all-time:
    • Site-wide: 37,590 out of 71,063
    • In bioinformatics: 4,591 out of 6,946
  • Year to date:
    • Site-wide: 2,129 out of 71,063
  • Since beginning of last month:
    • Site-wide: 486 out of 71,063

GenoGAM 2.0: Scalable and efficient implementation of genome-wide generalized additive models for gigabase-scale genomes

bioinformatics more details view paper
  • Downloaded 146 times
  • Download rankings, all-time:
    • Site-wide: 60,254 out of 71,063
    • In bioinformatics: 6,287 out of 6,946
  • Year to date:
    • Site-wide: 65,126 out of 71,063
  • Since beginning of last month:
    • Site-wide: 62,446 out of 71,063

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News