Author: Jens Nielsen
- ORCiD: http://orcid.org/0000-0002-9955-6003
- Most recently observed institution: Chalmers university of technology
Rankings
- All-time downloads: 89,967 (rank: 2,402 )
- Categories:
- biochemistry: 515 (rank: 15,850 (tie) )
- bioengineering: 1,919 (rank: 2,257 (tie) )
- bioinformatics: 5,459 (rank: 2,798 (tie) )
- cancer biology: 1,444 (rank: 7,490 (tie) )
- ecology: 131 (rank: 25,858 (tie) )
- endocrinology: 803 (rank: 361 (tie) )
- epidemiology: 32,391 (rank: 747 (tie) )
- infectious diseases: 4,942 (rank: 12,094 (tie) )
- microbiology: 606 (rank: 32,713 (tie) )
- molecular biology: 3,539 (rank: 1,462 (tie) )
- pharmacology and therapeutics: 543 (rank: 793 (tie) )
- physiology: 603 (rank: 3,642 (tie) )
- public and global health: 11,511 (rank: 583 (tie) )
- synthetic biology: 1,069 (rank: 2,685 (tie) )
- systems biology: 18,381 (rank: 166 )
Downloads per author, site-wide
Preprints
Fine-tuning of coumaric acid synthesis to increase naringenin production in yeast
synthetic biology more details view paperNo download data for this paper yet.
Vaccine effectiveness after 1st and 2nd dose of the BNT162b2 mRNA Covid-19 Vaccine in long-term care facility residents and healthcare workers - a Danish cohort study
epidemiology more details view paper- Downloaded 30,863 times
- Download rankings, all-time:
- Site-wide: 324
- In epidemiology: 66
- Year to date:
- Site-wide: 304
- Since beginning of last month:
- Site-wide: 932
Vaccine effectiveness of the BNT162b2 mRNA COVID-19 vaccine against RT-PCR confirmed SARS-CoV-2 infections, hospitalisations and mortality in prioritised risk groups
public and global health more details view paper- Downloaded 11,741 times
- Download rankings, all-time:
- Site-wide: 1,044
- In public and global health: 42
- Year to date:
- Site-wide: 5,394
- Since beginning of last month:
- Site-wide: 12,366
Combined metabolic cofactor supplementation accelerates recovery in mild-to-moderate COVID-19
infectious diseases more details view paper- Downloaded 5,229 times
- Download rankings, all-time:
- Site-wide: 2,990
- In infectious diseases: 756
- Year to date:
- Site-wide: 4,410
- Since beginning of last month:
- Site-wide: 4,997
The human secretome – the proteins secreted from human cells
molecular biology more details view paper- Downloaded 3,755 times
- Download rankings, all-time:
- Site-wide: 4,710
- In molecular biology: 99
- Year to date:
- Site-wide: 10,868
- Since beginning of last month:
- Site-wide: 9,769
Vaccine effectiveness when combining the ChAdOx1 vaccine as the first dose with an mRNA COVID-19 vaccine as the second dose
epidemiology more details view paper- Downloaded 3,056 times
- Download rankings, all-time:
- Site-wide: 6,362
- In epidemiology: 576
- Year to date:
- Site-wide: 7,900
- Since beginning of last month:
- Site-wide: 20,667
Evolution from adherent to suspension – systems biology of HEK293 cell line development
systems biology more details view paper- Downloaded 2,946 times
- Download rankings, all-time:
- Site-wide: 6,694
- In systems biology: 99
- Year to date:
- Site-wide: 18,874
- Since beginning of last month:
- Site-wide: 11,979
Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite
systems biology more details view paper- Downloaded 2,424 times
- Download rankings, all-time:
- Site-wide: 8,900
- In systems biology: 132
- Year to date:
- Site-wide: 44,722
- Since beginning of last month:
- Site-wide: 40,783
Predictive engineering and optimization of tryptophan metabolism in yeast through a combination of mechanistic and machine learning models
bioengineering more details view paper- Downloaded 1,971 times
- Download rankings, all-time:
- Site-wide: 12,132
- In bioengineering: 190
- Year to date:
- Site-wide: 69,361
- Since beginning of last month:
- Site-wide: 44,641
Machine learning applied to predicting microorganism growth temperatures and enzyme catalytic optima
bioinformatics more details view paper- Downloaded 1,703 times
- Download rankings, all-time:
- Site-wide: 15,049
- In bioinformatics: 1,610
- Year to date:
- Site-wide: 36,410
- Since beginning of last month:
- Site-wide: 58,602
Deep learning based kcat prediction enables improved enzyme constrained model reconstruction
systems biology more details view paper- Downloaded 1,448 times
- Download rankings, all-time:
- Site-wide: 19,299
- In systems biology: 599
- Year to date:
- Site-wide: 3,072
- Since beginning of last month:
- Site-wide: 2,037
iNetModels 2.0: an interactive visualization and database of multi-omics data
bioinformatics more details view paper- Downloaded 1,443 times
- Download rankings, all-time:
- Site-wide: 19,425
- In bioinformatics: 2,105
- Year to date:
- Site-wide: 63,387
- Since beginning of last month:
- Site-wide: 25,587
Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies
systems biology more details view paper- Downloaded 1,367 times
- Download rankings, all-time:
- Site-wide: 21,098
- In systems biology: 365
- Year to date:
- Site-wide: 22,305
- Since beginning of last month:
- Site-wide: 36,709
Genome-scale model of Rhodotorula toruloides metabolism
systems biology more details view paper- Downloaded 1,336 times
- Download rankings, all-time:
- Site-wide: 21,878
- In systems biology: 424
- Year to date:
- Site-wide: 28,813
- Since beginning of last month:
- Site-wide: 23,787
Pan-cancer analysis of the metabolic reaction network
cancer biology more details view paper- Downloaded 1,323 times
- Download rankings, all-time:
- Site-wide: 22,224
- In cancer biology: 473
- Year to date:
- Site-wide: 138,524
- Since beginning of last month:
- Site-wide: 147,366
Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae
bioinformatics more details view paper- Downloaded 1,313 times
- Download rankings, all-time:
- Site-wide: 22,463
- In bioinformatics: 2,695
- Year to date:
- Site-wide: 27,349
- Since beginning of last month:
- Site-wide: 9,237
RAVEN 2.0: a versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor
systems biology more details view paper- Downloaded 1,260 times
- Download rankings, all-time:
- Site-wide: 23,977
- In systems biology: 421
- Year to date:
- Site-wide: 94,217
- Since beginning of last month:
- Site-wide: 67,644
Supervised generative design of regulatory DNA forgene expression control
synthetic biology more details view paper- Downloaded 1,203 times
- Download rankings, all-time:
- Site-wide: 25,767
- In synthetic biology: 360
- Year to date:
- Site-wide: 19,636
- Since beginning of last month:
- Site-wide: 14,292
Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0
systems biology more details view paper- Downloaded 1,096 times
- Download rankings, all-time:
- Site-wide: 29,640
- In systems biology: 843
- Year to date:
- Site-wide: 8,037
- Since beginning of last month:
- Site-wide: 3,558
The Reactobiome Unravels a New Paradigm in Human Gut Microbiome Metabolism
systems biology more details view paper- Downloaded 924 times
- Download rankings, all-time:
- Site-wide: 38,307
- In systems biology: 851
- Year to date:
- Site-wide: 22,625
- Since beginning of last month:
- Site-wide: 23,657
Addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq
bioinformatics more details view paper- Downloaded 809 times
- Download rankings, all-time:
- Site-wide: 46,517
- In bioinformatics: 4,521
- Year to date:
- Site-wide: 145,504
- Since beginning of last month:
- Site-wide: 89,617
Stress-Induced Expression is Enriched for Evolutionarily Young Genes in Diverse Budding Yeasts
systems biology more details view paper- Downloaded 694 times
- Download rankings, all-time:
- Site-wide: 57,952
- In systems biology: 1,124
- Year to date:
- Site-wide: 149,632
- Since beginning of last month:
- Site-wide: 149,242
Deciphering the tissue specificity of the protein secretory pathway in humans
systems biology more details view paper- Downloaded 675 times
- Download rankings, all-time:
- Site-wide: 60,280
- In systems biology: 1,147
- Year to date:
- Site-wide: 183,490
- Since beginning of last month:
- Site-wide: 185,472
Discovery of functional alternatively spliced PKM transcripts in human cancers
systems biology more details view paper- Downloaded 666 times
- Download rankings, all-time:
- Site-wide: 61,396
- In systems biology: 1,187
- Year to date:
- Site-wide: 170,167
- Since beginning of last month:
- Site-wide: 178,579
Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production
microbiology more details view paper- Downloaded 645 times
- Download rankings, all-time:
- Site-wide: 64,021
- In microbiology: 3,856
- Year to date:
- Site-wide: 94,380
- Since beginning of last month:
- Site-wide: 79,745
Fundamental Constraints In Synchronous Muscle Limit Superfast Motor Control In Vertebrates
physiology more details view paper- Downloaded 617 times
- Download rankings, all-time:
- Site-wide: 67,813
- In physiology: 359
- Year to date:
- Site-wide: 137,939
- Since beginning of last month:
- Site-wide: 165,734
SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework
systems biology more details view paper- Downloaded 600 times
- Download rankings, all-time:
- Site-wide: 70,307
- In systems biology: 1,395
- Year to date:
- Site-wide: 156,232
- Since beginning of last month:
- Site-wide: 150,148
Multi-omics analysis reveals the impact of microbiota on host metabolism in hepatic steatosis
endocrinology more details view paper- Downloaded 572 times
- Download rankings, all-time:
- Site-wide: 74,711
- In endocrinology: 73
- Year to date:
- Site-wide: 22,610
- Since beginning of last month:
- Site-wide: 27,243
Informing Pharmacokinetic Models with Physiological Data: Oral Population Modeling of L-Serine in Humans
pharmacology and therapeutics more details view paper- Downloaded 563 times
- Download rankings, all-time:
- Site-wide: 76,106
- In pharmacology and therapeutics: 88
- Year to date:
- Site-wide: 115,724
- Since beginning of last month:
- Site-wide: 180,062
Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments
systems biology more details view paper- Downloaded 557 times
- Download rankings, all-time:
- Site-wide: 77,120
- In systems biology: 1,545
- Year to date:
- Site-wide: 160,913
- Since beginning of last month:
- Site-wide: 137,858
RMetD2: a tool for integration of relative transcriptomics data into Genome-scale metabolic models
bioinformatics more details view paper- Downloaded 552 times
- Download rankings, all-time:
- Site-wide: 77,914
- In bioinformatics: 7,135
- Year to date:
- Site-wide: 82,027
- Since beginning of last month:
- Site-wide: 88,028
Reconstruction and Analysis of a Kluyveromyces marxianus Genome-scale Metabolic Model
systems biology more details view paper- Downloaded 521 times
- Download rankings, all-time:
- Site-wide: 83,581
- In systems biology: 1,744
- Year to date:
- Site-wide: 128,173
- Since beginning of last month:
- Site-wide: 115,889
Transcriptome analysis of EPO and GFP HEK293 Cell-lines Reveal Shifts in Energy and ER Capacity Support Improved Erythropoietin Production in HEK293F Cells
systems biology more details view paper- Downloaded 485 times
- Download rankings, all-time:
- Site-wide: 90,663
- In systems biology: 2,114
- Year to date:
- Site-wide: 48,383
- Since beginning of last month:
- Site-wide: 34,714
Saccharomyces cerevisiae displays a stable transcription start site landscape in multiple conditions
systems biology more details view paper- Downloaded 437 times
- Download rankings, all-time:
- Site-wide: 101,478
- In systems biology: 2,031
- Year to date:
- Site-wide: 183,388
- Since beginning of last month:
- Site-wide: 161,905
Combined Metabolic Activators Reduces Liver Fat in Nonalcoholic Fatty Liver Disease Patients
endocrinology more details view paper- Downloaded 431 times
- Download rankings, all-time:
- Site-wide: 102,944
- In endocrinology: 106
- Year to date:
- Site-wide: 36,687
- Since beginning of last month:
- Site-wide: 36,185
Vaccine effectiveness against SARS-CoV-2 reinfection during periods of Alpha (B.1.1.7), Delta (B.1.617.2) or Omicron (B.1.1.529) dominance: A Danish nationwide study
epidemiology more details view paper- Downloaded 427 times
- Download rankings, all-time:
- Site-wide: 103,843
- In epidemiology: None
- Year to date:
- Site-wide: 6,321
- Since beginning of last month:
- Site-wide: 803
Genome scale modeling of the protein secretory pathway reveals novel targets for improved recombinant protein production in yeast
systems biology more details view paper- Downloaded 412 times
- Download rankings, all-time:
- Site-wide: 107,351
- In systems biology: 2,591
- Year to date:
- Site-wide: 24,780
- Since beginning of last month:
- Site-wide: 16,267
Integrative functional analysis uncovers metabolic differences between Candida species
systems biology more details view paper- Downloaded 378 times
- Download rankings, all-time:
- Site-wide: 116,217
- In systems biology: 2,489
- Year to date:
- Site-wide: 67,812
- Since beginning of last month:
- Site-wide: 53,517
A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism
systems biology more details view paper- Downloaded 355 times
- Download rankings, all-time:
- Site-wide: 122,381
- In systems biology: 2,450
- Year to date:
- Site-wide: 136,157
- Since beginning of last month:
- Site-wide: 128,157
Analytical Performance of a Standardized Kit for Mass Spectrometry-based Measurements of Human Glycosaminoglycans
biochemistry more details view paper- Downloaded 349 times
- Download rankings, all-time:
- Site-wide: 124,011
- In biochemistry: 3,879
- Year to date:
- Site-wide: 65,084
- Since beginning of last month:
- Site-wide: 21,738
Integrated metabolic modeling, culturing and transcriptomics explains enhanced virulence of V. cholerae during co-infection with ETEC
systems biology more details view paper- Downloaded 281 times
- Download rankings, all-time:
- Site-wide: 143,928
- In systems biology: 2,880
- Year to date:
- Site-wide: 123,234
- Since beginning of last month:
- Site-wide: 68,365
Quantifying absolute gene expression profiles reveals distinct regulation of central carbon metabolism genes in yeast
systems biology more details view paper- Downloaded 275 times
- Download rankings, all-time:
- Site-wide: 145,906
- In systems biology: 2,851
- Year to date:
- Site-wide: 165,484
- Since beginning of last month:
- Site-wide: 182,754
A Single Chromosome Strain of S. cerevisiae Exhibits Diminished Ethanol Metabolism and Tolerance.
systems biology more details view paper- Downloaded 263 times
- Download rankings, all-time:
- Site-wide: 149,399
- In systems biology: 2,905
- Year to date:
- Site-wide: 162,600
- Since beginning of last month:
- Site-wide: 181,514
A network-based approach reveals the dysregulated transcriptional regulation in non-alcohol fatty liver disease
systems biology more details view paper- Downloaded 256 times
- Download rankings, all-time:
- Site-wide: 151,435
- In systems biology: 3,016
- Year to date:
- Site-wide: 90,579
- Since beginning of last month:
- Site-wide: 93,018
Analysis of Normal Levels of Urine and Plasma Free Glycosaminoglycans in Adults
biochemistry more details view paper- Downloaded 254 times
- Download rankings, all-time:
- Site-wide: 152,097
- In biochemistry: 4,422
- Year to date:
- Site-wide: 111,430
- Since beginning of last month:
- Site-wide: 102,489
Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data
systems biology more details view paper- Downloaded 232 times
- Download rankings, all-time:
- Site-wide: 158,455
- In systems biology: None
- Year to date:
- Site-wide: 15,950
- Since beginning of last month:
- Site-wide: 5,037
Learning deep representations of enzyme thermal adaptation
bioinformatics more details view paper- Downloaded 232 times
- Download rankings, all-time:
- Site-wide: 158,433
- In bioinformatics: None
- Year to date:
- Site-wide: 15,957
- Since beginning of last month:
- Site-wide: 18,132
Cellular limitation of enzymatic capacity explains glutamine addiction in cancers
cancer biology more details view paper- Downloaded 206 times
- Download rankings, all-time:
- Site-wide: 165,163
- In cancer biology: 5,167
- Year to date:
- Site-wide: 18,940
- Since beginning of last month:
- Site-wide: 60,138
Non-random organization of flux control mechanisms in yeast central metabolic pathways
systems biology more details view paper- Downloaded 204 times
- Download rankings, all-time:
- Site-wide: 165,904
- In systems biology: 3,280
- Year to date:
- Site-wide: 45,792
- Since beginning of last month:
- Site-wide: 102,468
Machine learning-based investigation of the cancer protein secretory pathway
systems biology more details view paper- Downloaded 175 times
- Download rankings, all-time:
- Site-wide: 172,977
- In systems biology: 3,294
- Year to date:
- Site-wide: 171,855
- Since beginning of last month:
- Site-wide: 129,497
Discovery of therapeutic agents targeting PKLR for NAFLD using drug repositioning
systems biology more details view paper- Downloaded 173 times
- Download rankings, all-time:
- Site-wide: 173,254
- In systems biology: 3,502
- Year to date:
- Site-wide: 24,112
- Since beginning of last month:
- Site-wide: 53,150
Amino acid and nucleotide metabolism shape the selection of trophic levels in animals
ecology more details view paper- Downloaded 158 times
- Download rankings, all-time:
- Site-wide: 176,676
- In ecology: 5,969
- Year to date:
- Site-wide: 108,357
- Since beginning of last month:
- Site-wide: 82,896
Systems analysis of metabolic responses to a mixed meal test in an obese cohort reveals links between tissue metabolism and the gut microbiota
systems biology more details view paper- Downloaded 112 times
- Download rankings, all-time:
- Site-wide: 184,312
- In systems biology: None
- Year to date:
- Site-wide: 41,429
- Since beginning of last month:
- Site-wide: 20,533
PanLingua
News
- 27 Nov 2020: The website and API now include results pulled from medRxiv as well as bioRxiv.
- 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
- 21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
- 10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
- 1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
- 8 Feb 2019: Data from Altmetric is now available on the Rxivist details page for every preprint. Look for the "donut" under the download metrics.
- 30 Jan 2019: preLights has featured the Rxivist preprint and written about our findings.
- 22 Jan 2019: Nature just published an article about Rxivist and our data.
- 13 Jan 2019: The Rxivist preprint is live!