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Author: Jens Nielsen

Rankings

  • All-time downloads: 38,561 (rank: 3,830 )
  • Categories:
    • biochemistry: 146 (rank: 22,334 (tie) )
    • bioengineering: 1,708 (rank: 1,679 (tie) )
    • bioinformatics: 4,466 (rank: 2,708 (tie) )
    • cancer biology: 1,225 (rank: 5,950 (tie) )
    • epidemiology: 12,088 (rank: 1,043 (tie) )
    • infectious diseases: 2,947 (rank: 11,117 (tie) )
    • microbiology: 477 (rank: 28,192 (tie) )
    • molecular biology: 2,950 (rank: 1,220 (tie) )
    • pharmacology and therapeutics: 434 (rank: 471 (tie) )
    • physiology: 502 (rank: 2,838 (tie) )
    • systems biology: 11,618 (rank: 192 )

Downloads per author, site-wide

Preprints

Vaccine effectiveness after 1st and 2nd dose of the BNT162b2 mRNA Covid-19 Vaccine in long-term care facility residents and healthcare workers - a Danish cohort study

epidemiology more details view paper
  • Downloaded 12,088 times
  • Download rankings, all-time:
    • Site-wide: 622
    • In epidemiology: 89
  • Year to date:
    • Site-wide: 61
  • Since beginning of last month:
    • Site-wide: 15

The human secretome – the proteins secreted from human cells

molecular biology more details view paper
  • Downloaded 2,950 times
  • Download rankings, all-time:
    • Site-wide: 4,273
    • In molecular biology: 94
  • Year to date:
    • Site-wide: 9,726
  • Since beginning of last month:
    • Site-wide: 10,486

Combined metabolic cofactor supplementation accelerates recovery in mild-to-moderate COVID-19

infectious diseases more details view paper
  • Downloaded 2,947 times
  • Download rankings, all-time:
    • Site-wide: 4,280
    • In infectious diseases: 752
  • Year to date:
    • Site-wide: 502
  • Since beginning of last month:
    • Site-wide: 658

Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

systems biology more details view paper
  • Downloaded 2,120 times
  • Download rankings, all-time:
    • Site-wide: 6,931
    • In systems biology: 124
  • Year to date:
    • Site-wide: 29,362
  • Since beginning of last month:
    • Site-wide: 31,731

Evolution from adherent to suspension – systems biology of HEK293 cell line development

systems biology more details view paper
  • Downloaded 2,100 times
  • Download rankings, all-time:
    • Site-wide: 7,026
    • In systems biology: 126
  • Year to date:
    • Site-wide: 3,754
  • Since beginning of last month:
    • Site-wide: 4,637

Predictive engineering and optimization of tryptophan metabolism in yeast through a combination of mechanistic and machine learning models

bioengineering more details view paper
  • Downloaded 1,708 times
  • Download rankings, all-time:
    • Site-wide: 9,580
    • In bioengineering: 158
  • Year to date:
    • Site-wide: 31,138
  • Since beginning of last month:
    • Site-wide: 28,002

Machine learning applied to predicting microorganism growth temperatures and enzyme catalytic optima

bioinformatics more details view paper
  • Downloaded 1,349 times
  • Download rankings, all-time:
    • Site-wide: 13,567
    • In bioinformatics: 1,638
  • Year to date:
    • Site-wide: 34,990
  • Since beginning of last month:
    • Site-wide: 31,799

Pan-cancer analysis of the metabolic reaction network

cancer biology more details view paper
  • Downloaded 1,225 times
  • Download rankings, all-time:
    • Site-wide: 15,735
    • In cancer biology: 343
  • Year to date:
    • Site-wide: 93,600
  • Since beginning of last month:
    • Site-wide: 92,889

iNetModels 2.0: an interactive visualization and database of multi-omics data

bioinformatics more details view paper
  • Downloaded 1,185 times
  • Download rankings, all-time:
    • Site-wide: 16,501
    • In bioinformatics: 1,982
  • Year to date:
    • Site-wide: 9,482
  • Since beginning of last month:
    • Site-wide: 34,351

RAVEN 2.0: a versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

systems biology more details view paper
  • Downloaded 1,153 times
  • Download rankings, all-time:
    • Site-wide: 17,209
    • In systems biology: 343
  • Year to date:
    • Site-wide: 55,822
  • Since beginning of last month:
    • Site-wide: 67,827

Genome-scale model of Rhodotorula toruloides metabolism

systems biology more details view paper
  • Downloaded 985 times
  • Download rankings, all-time:
    • Site-wide: 21,622
    • In systems biology: 444
  • Year to date:
    • Site-wide: 44,388
  • Since beginning of last month:
    • Site-wide: 67,929

Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae

bioinformatics more details view paper
  • Downloaded 829 times
  • Download rankings, all-time:
    • Site-wide: 27,661
    • In bioinformatics: 3,194
  • Year to date:
    • Site-wide: 8,745
  • Since beginning of last month:
    • Site-wide: 11,486

Addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq

bioinformatics more details view paper
  • Downloaded 700 times
  • Download rankings, all-time:
    • Site-wide: 34,983
    • In bioinformatics: 3,898
  • Year to date:
    • Site-wide: 43,392
  • Since beginning of last month:
    • Site-wide: 57,420

Deciphering the tissue specificity of the protein secretory pathway in humans

systems biology more details view paper
  • Downloaded 626 times
  • Download rankings, all-time:
    • Site-wide: 40,504
    • In systems biology: 919
  • Year to date:
    • Site-wide: 117,921
  • Since beginning of last month:
    • Site-wide: 101,749

Discovery of functional alternatively spliced PKM transcripts in human cancers

systems biology more details view paper
  • Downloaded 578 times
  • Download rankings, all-time:
    • Site-wide: 44,764
    • In systems biology: 1,030
  • Year to date:
    • Site-wide: 44,260
  • Since beginning of last month:
    • Site-wide: 47,277

Stress-Induced Expression is Enriched for Evolutionarily Young Genes in Diverse Budding Yeasts

systems biology more details view paper
  • Downloaded 578 times
  • Download rankings, all-time:
    • Site-wide: 44,760
    • In systems biology: 1,029
  • Year to date:
    • Site-wide: 112,125
  • Since beginning of last month:
    • Site-wide: 130,612

SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

systems biology more details view paper
  • Downloaded 542 times
  • Download rankings, all-time:
    • Site-wide: 48,462
    • In systems biology: 1,122
  • Year to date:
    • Site-wide: 99,745
  • Since beginning of last month:
    • Site-wide: 116,876

Fundamental Constraints In Synchronous Muscle Limit Superfast Motor Control In Vertebrates

physiology more details view paper
  • Downloaded 502 times
  • Download rankings, all-time:
    • Site-wide: 53,016
    • In physiology: 302
  • Year to date:
    • Site-wide: 80,124
  • Since beginning of last month:
    • Site-wide: 85,548

Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production

microbiology more details view paper
  • Downloaded 477 times
  • Download rankings, all-time:
    • Site-wide: 56,242
    • In microbiology: 3,627
  • Year to date:
    • Site-wide: 39,080
  • Since beginning of last month:
    • Site-wide: 20,365

Reconstruction and Analysis of a Kluyveromyces marxianus Genome-scale Metabolic Model

systems biology more details view paper
  • Downloaded 458 times
  • Download rankings, all-time:
    • Site-wide: 58,765
    • In systems biology: 1,401
  • Year to date:
    • Site-wide: 120,358
  • Since beginning of last month:
    • Site-wide: 124,312

Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments

systems biology more details view paper
  • Downloaded 454 times
  • Download rankings, all-time:
    • Site-wide: 59,288
    • In systems biology: 1,412
  • Year to date:
    • Site-wide: 15,492
  • Since beginning of last month:
    • Site-wide: 12,483

Informing Pharmacokinetic Models with Physiological Data: Oral Population Modeling of L-Serine in Humans

pharmacology and therapeutics more details view paper
  • Downloaded 434 times
  • Download rankings, all-time:
    • Site-wide: 61,965
    • In pharmacology and therapeutics: 60
  • Year to date:
    • Site-wide: 41,879
  • Since beginning of last month:
    • Site-wide: 32,624

RMetD2: a tool for integration of relative transcriptomics data into Genome-scale metabolic models

bioinformatics more details view paper
  • Downloaded 403 times
  • Download rankings, all-time:
    • Site-wide: 66,843
    • In bioinformatics: 6,479
  • Year to date:
    • Site-wide: 69,693
  • Since beginning of last month:
    • Site-wide: 68,842

Saccharomyces cerevisiae displays a stable transcription start site landscape in multiple conditions

systems biology more details view paper
  • Downloaded 371 times
  • Download rankings, all-time:
    • Site-wide: 72,267
    • In systems biology: 1,729
  • Year to date:
    • Site-wide: 126,106
  • Since beginning of last month:
    • Site-wide: 129,615

The Reactobiome Unravels a New Paradigm in Human Gut Microbiome Metabolism

systems biology more details view paper
  • Downloaded 342 times
  • Download rankings, all-time:
    • Site-wide: 77,602
    • In systems biology: 1,844
  • Year to date:
    • Site-wide: 5,703
  • Since beginning of last month:
    • Site-wide: 12,842

A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism

systems biology more details view paper
  • Downloaded 273 times
  • Download rankings, all-time:
    • Site-wide: 91,696
    • In systems biology: 2,150
  • Year to date:
    • Site-wide: 31,606
  • Since beginning of last month:
    • Site-wide: 21,117

Transcriptome analysis of EPO and GFP HEK293 Cell-lines Reveal Shifts in Energy and ER Capacity Support Improved Erythropoietin Production in HEK293F Cells

systems biology more details view paper
  • Downloaded 224 times
  • Download rankings, all-time:
    • Site-wide: 102,584
    • In systems biology: 2,367
  • Year to date:
    • Site-wide: 40,078
  • Since beginning of last month:
    • Site-wide: 28,790

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

systems biology more details view paper
  • Downloaded 181 times
  • Download rankings, all-time:
    • Site-wide: 112,155
    • In systems biology: 2,535
  • Year to date:
    • Site-wide: 13,853
  • Since beginning of last month:
    • Site-wide: 4,609

A Single Chromosome Strain of S. cerevisiae Exhibits Diminished Ethanol Metabolism and Tolerance.

systems biology more details view paper
  • Downloaded 170 times
  • Download rankings, all-time:
    • Site-wide: 114,565
    • In systems biology: 2,579
  • Year to date:
    • Site-wide: 84,284
  • Since beginning of last month:
    • Site-wide: 83,222

Integrated metabolic modeling, culturing and transcriptomics explains enhanced virulence of V. cholerae during co-infection with ETEC

systems biology more details view paper
  • Downloaded 170 times
  • Download rankings, all-time:
    • Site-wide: 114,542
    • In systems biology: 2,581
  • Year to date:
    • Site-wide: 104,885
  • Since beginning of last month:
    • Site-wide: 108,294

Quantifying absolute gene expression profiles reveals distinct regulation of central carbon metabolism genes in yeast

systems biology more details view paper
  • Downloaded 169 times
  • Download rankings, all-time:
    • Site-wide: 114,728
    • In systems biology: 2,589
  • Year to date:
    • Site-wide: 31,814
  • Since beginning of last month:
    • Site-wide: 42,440

Analytical Performance of a Standardized Kit for Mass Spectrometry-based Measurements of Human Glycosaminoglycans

biochemistry more details view paper
  • Downloaded 146 times
  • Download rankings, all-time:
    • Site-wide: 119,630
    • In biochemistry: 3,589
  • Year to date:
    • Site-wide: 18,156
  • Since beginning of last month:
    • Site-wide: 24,083

Machine learning-based investigation of the cancer protein secretory pathway

systems biology more details view paper
  • Downloaded 124 times
  • Download rankings, all-time:
    • Site-wide: 124,061
    • In systems biology: 2,718
  • Year to date:
    • Site-wide: 94,287
  • Since beginning of last month:
    • Site-wide: 89,530

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