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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,292 bioRxiv papers from 276,522 authors.

Author: Aviv Regev

  • ORCiD: http://orcid.org/0000-0003-3293-3158
  • Most recently observed institution: Klarman Cell Observatory Broad Institute of MIT and Harvard Howard Hughes Medical Institute, Department of Biology, Koch Institute and Ludwig Center, Massachusetts Institute of Technology

Rankings

  • All-time downloads: 129,920 (rank: 42 out of 276,522)
  • Categories:
    • bioengineering: 8,102 (rank: 18 (tie) out of 6,803)
    • bioinformatics: 19,430 (rank: 83 out of 24,276)
    • cancer biology: 2,985 (rank: 455 (tie) out of 16,972)
    • cell biology: 13,268 (rank: 16 (tie) out of 18,173)
    • developmental biology: 2,054 (rank: 346 (tie) out of 10,225)
    • evolutionary biology: 677 (rank: 5,055 (tie) out of 15,095)
    • genomics: 52,609 (rank: 100 out of 31,837)
    • immunology: 5,264 (rank: 93 out of 12,356)
    • molecular biology: 8,942 (rank: 32 out of 12,507)
    • neuroscience: 13,522 (rank: 186 out of 45,459)
    • systems biology: 3,067 (rank: 390 (tie) out of 8,355)

Downloads per author, site-wide

Preprints

Genetic predisposition to myeloproliferative neoplasms implicates hematopoietic stem cell biology

genetics more details view paper

No bioRxiv download data for this paper yet.

An endogenous glucocorticoid-cytokine signaling circuit promotes CD8+ T cell dysfunction in the tumor microenvironment

immunology more details view paper

No bioRxiv download data for this paper yet.

In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with Autism risk genes

genomics more details view paper

No bioRxiv download data for this paper yet.

Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

cell biology more details view paper

No bioRxiv download data for this paper yet.

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,691 times
  • Download rankings, all-time:
    • Site-wide: 76 out of 62,292
    • In cell biology: 2 out of 2,972
  • Year to date:
    • Site-wide: 4,733 out of 62,292
  • Since beginning of last month:
    • Site-wide: 4,503 out of 62,292

Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming.

bioinformatics more details view paper
  • Downloaded 10,425 times
  • Download rankings, all-time:
    • Site-wide: 95 out of 62,292
    • In bioinformatics: 17 out of 6,225
  • Year to date:
    • Site-wide: 306 out of 62,292
  • Since beginning of last month:
    • Site-wide: 1,055 out of 62,292

DNA microscopy: Optics-free spatio-genetic imaging by a stand-alone chemical reaction

bioengineering more details view paper
  • Downloaded 8,102 times
  • Download rankings, all-time:
    • Site-wide: 159 out of 62,292
    • In bioengineering: 3 out of 1,235
  • Year to date:
    • Site-wide: 107 out of 62,292
  • Since beginning of last month:
    • Site-wide: 742 out of 62,292

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 7,409 times
  • Download rankings, all-time:
    • Site-wide: 185 out of 62,292
    • In genomics: 53 out of 4,282
  • Year to date:
    • Site-wide: 31 out of 62,292
  • Since beginning of last month:
    • Site-wide: 59 out of 62,292

Systematic comparative analysis of single cell RNA-sequencing methods

genomics more details view paper
  • Downloaded 6,543 times
  • Download rankings, all-time:
    • Site-wide: 251 out of 62,292
    • In genomics: 73 out of 4,282
  • Year to date:
    • Site-wide: 47 out of 62,292
  • Since beginning of last month:
    • Site-wide: 35 out of 62,292

DroNc-Seq: Deciphering cell types in human archived brain tissues by massively-parallel single nucleus RNA-seq

genomics more details view paper
  • Downloaded 6,490 times
  • Download rankings, all-time:
    • Site-wide: 254 out of 62,292
    • In genomics: 74 out of 4,282
  • Year to date:
    • Site-wide: 7,489 out of 62,292
  • Since beginning of last month:
    • Site-wide: 8,188 out of 62,292

STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

bioinformatics more details view paper
  • Downloaded 5,882 times
  • Download rankings, all-time:
    • Site-wide: 305 out of 62,292
    • In bioinformatics: 57 out of 6,225
  • Year to date:
    • Site-wide: 754 out of 62,292
  • Since beginning of last month:
    • Site-wide: 1,051 out of 62,292

Deciphering eukaryotic cis-regulatory logic with 100 million random promoters

genomics more details view paper
  • Downloaded 4,888 times
  • Download rankings, all-time:
    • Site-wide: 410 out of 62,292
    • In genomics: 108 out of 4,282
  • Year to date:
    • Site-wide: 2,263 out of 62,292
  • Since beginning of last month:
    • Site-wide: None out of 62,292

High-density spatial transcriptomics arrays for in situ tissue profiling

genomics more details view paper
  • Downloaded 4,822 times
  • Download rankings, all-time:
    • Site-wide: 424 out of 62,292
    • In genomics: 114 out of 4,282
  • Year to date:
    • Site-wide: 70 out of 62,292
  • Since beginning of last month:
    • Site-wide: 105 out of 62,292

Genetic determinants of co-accessible chromatin regions in T cell activation across humans

genomics more details view paper
  • Downloaded 4,562 times
  • Download rankings, all-time:
    • Site-wide: 467 out of 62,292
    • In genomics: 125 out of 4,282
  • Year to date:
    • Site-wide: 12,202 out of 62,292
  • Since beginning of last month:
    • Site-wide: None out of 62,292

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

molecular biology more details view paper
  • Downloaded 4,363 times
  • Download rankings, all-time:
    • Site-wide: 520 out of 62,292
    • In molecular biology: 12 out of 1,948
  • Year to date:
    • Site-wide: 18,296 out of 62,292
  • Since beginning of last month:
    • Site-wide: 22,078 out of 62,292

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

genomics more details view paper
  • Downloaded 4,232 times
  • Download rankings, all-time:
    • Site-wide: 554 out of 62,292
    • In genomics: 147 out of 4,282
  • Year to date:
    • Site-wide: 178 out of 62,292
  • Since beginning of last month:
    • Site-wide: None out of 62,292

High-resolution interrogation of functional elements in the noncoding genome

molecular biology more details view paper
  • Downloaded 3,747 times
  • Download rankings, all-time:
    • Site-wide: 708 out of 62,292
    • In molecular biology: 15 out of 1,948
  • Year to date:
    • Site-wide: 36,502 out of 62,292
  • Since beginning of last month:
    • Site-wide: 17,928 out of 62,292

Div-Seq: A single nucleus RNA-Seq method reveals dynamics of rare adult newborn neurons in the CNS

neuroscience more details view paper
  • Downloaded 3,511 times
  • Download rankings, all-time:
    • Site-wide: 800 out of 62,292
    • In neuroscience: 105 out of 11,115
  • Year to date:
    • Site-wide: 28,289 out of 62,292
  • Since beginning of last month:
    • Site-wide: 28,537 out of 62,292

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

genomics more details view paper
  • Downloaded 3,145 times
  • Download rankings, all-time:
    • Site-wide: 971 out of 62,292
    • In genomics: 244 out of 4,282
  • Year to date:
    • Site-wide: 330 out of 62,292
  • Since beginning of last month:
    • Site-wide: 38,031 out of 62,292

Composite measurements and molecular compressed sensing for highly efficient transcriptomics

systems biology more details view paper
  • Downloaded 3,067 times
  • Download rankings, all-time:
    • Site-wide: 1,020 out of 62,292
    • In systems biology: 20 out of 1,768
  • Year to date:
    • Site-wide: 21,399 out of 62,292
  • Since beginning of last month:
    • Site-wide: 25,738 out of 62,292

A single cell-based atlas of human microglial states reveals associations with neurological disorders and histopathological features of the aging brain

neuroscience more details view paper
  • Downloaded 2,937 times
  • Download rankings, all-time:
    • Site-wide: 1,112 out of 62,292
    • In neuroscience: 157 out of 11,115
  • Year to date:
    • Site-wide: 642 out of 62,292
  • Since beginning of last month:
    • Site-wide: 883 out of 62,292

Single-cell transcriptomics of the aged mouse brain reveals convergent, divergent and unique aging signatures

neuroscience more details view paper
  • Downloaded 2,932 times
  • Download rankings, all-time:
    • Site-wide: 1,114 out of 62,292
    • In neuroscience: 158 out of 11,115
  • Year to date:
    • Site-wide: 386 out of 62,292
  • Since beginning of last month:
    • Site-wide: 555 out of 62,292

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

developmental biology more details view paper
  • Downloaded 2,054 times
  • Download rankings, all-time:
    • Site-wide: 2,085 out of 62,292
    • In developmental biology: 26 out of 1,855
  • Year to date:
    • Site-wide: 356 out of 62,292
  • Since beginning of last month:
    • Site-wide: 180 out of 62,292

Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age

immunology more details view paper
  • Downloaded 2,038 times
  • Download rankings, all-time:
    • Site-wide: 2,125 out of 62,292
    • In immunology: 26 out of 1,548
  • Year to date:
    • Site-wide: 22,636 out of 62,292
  • Since beginning of last month:
    • Site-wide: 41,726 out of 62,292

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

neuroscience more details view paper
  • Downloaded 1,920 times
  • Download rankings, all-time:
    • Site-wide: 2,359 out of 62,292
    • In neuroscience: 345 out of 11,115
  • Year to date:
    • Site-wide: 1,429 out of 62,292
  • Since beginning of last month:
    • Site-wide: 4,191 out of 62,292

T helper cells modulate intestinal stem cell renewal and differentiation

immunology more details view paper
  • Downloaded 1,888 times
  • Download rankings, all-time:
    • Site-wide: 2,428 out of 62,292
    • In immunology: 30 out of 1,548
  • Year to date:
    • Site-wide: 7,291 out of 62,292
  • Since beginning of last month:
    • Site-wide: 13,790 out of 62,292

Landscape of X chromosome inactivation across human tissues

genomics more details view paper
  • Downloaded 1,841 times
  • Download rankings, all-time:
    • Site-wide: 2,539 out of 62,292
    • In genomics: 522 out of 4,282
  • Year to date:
    • Site-wide: 35,904 out of 62,292
  • Since beginning of last month:
    • Site-wide: 39,924 out of 62,292

A quantitative model for characterizing the evolutionary history of mammalian gene expression

genomics more details view paper
  • Downloaded 1,705 times
  • Download rankings, all-time:
    • Site-wide: 2,888 out of 62,292
    • In genomics: 578 out of 4,282
  • Year to date:
    • Site-wide: 11,609 out of 62,292
  • Since beginning of last month:
    • Site-wide: 16,829 out of 62,292

A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia demonstrates cancer-crosstalk with stroma to impair normal tissue function

cell biology more details view paper
  • Downloaded 1,577 times
  • Download rankings, all-time:
    • Site-wide: 3,282 out of 62,292
    • In cell biology: 84 out of 2,972
  • Year to date:
    • Site-wide: 595 out of 62,292
  • Since beginning of last month:
    • Site-wide: None out of 62,292

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

genomics more details view paper
  • Downloaded 1,511 times
  • Download rankings, all-time:
    • Site-wide: 3,522 out of 62,292
    • In genomics: 665 out of 4,282
  • Year to date:
    • Site-wide: 653 out of 62,292
  • Since beginning of last month:
    • Site-wide: 19 out of 62,292

GeNets: A unified web platform for network-based analyses of genomic data

genomics more details view paper
  • Downloaded 1,475 times
  • Download rankings, all-time:
    • Site-wide: 3,673 out of 62,292
    • In genomics: 686 out of 4,282
  • Year to date:
    • Site-wide: 45,162 out of 62,292
  • Since beginning of last month:
    • Site-wide: 39,674 out of 62,292

Longitudinal single cell profiling of regulatory T cells identifies IL-33 as a driver of tumor immunosuppression

cancer biology more details view paper
  • Downloaded 1,406 times
  • Download rankings, all-time:
    • Site-wide: 3,995 out of 62,292
    • In cancer biology: 99 out of 2,047
  • Year to date:
    • Site-wide: 752 out of 62,292
  • Since beginning of last month:
    • Site-wide: 2,559 out of 62,292

Combinatorial prediction of marker panels from single-cell transcriptomic data

bioinformatics more details view paper
  • Downloaded 1,358 times
  • Download rankings, all-time:
    • Site-wide: 4,233 out of 62,292
    • In bioinformatics: 836 out of 6,225
  • Year to date:
    • Site-wide: 793 out of 62,292
  • Since beginning of last month:
    • Site-wide: 526 out of 62,292

Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics

genomics more details view paper
  • Downloaded 1,346 times
  • Download rankings, all-time:
    • Site-wide: 4,281 out of 62,292
    • In genomics: 781 out of 4,282
  • Year to date:
    • Site-wide: 806 out of 62,292
  • Since beginning of last month:
    • Site-wide: 2,870 out of 62,292

Skin inflammation driven by differentiation of quiescent tissue-resident ILCs into a spectrum of pathogenic effectors

immunology more details view paper
  • Downloaded 1,338 times
  • Download rankings, all-time:
    • Site-wide: 4,320 out of 62,292
    • In immunology: 52 out of 1,548
  • Year to date:
    • Site-wide: 2,087 out of 62,292
  • Since beginning of last month:
    • Site-wide: None out of 62,292

A cellular and spatial map of the choroid plexus across brain ventricles and ages

neuroscience more details view paper
  • Downloaded 1,251 times
  • Download rankings, all-time:
    • Site-wide: 4,801 out of 62,292
    • In neuroscience: 747 out of 11,115
  • Year to date:
    • Site-wide: 926 out of 62,292
  • Since beginning of last month:
    • Site-wide: 1,005 out of 62,292

scSVA: an interactive tool for big data visualization and exploration in single-cell omics

bioinformatics more details view paper
  • Downloaded 1,150 times
  • Download rankings, all-time:
    • Site-wide: 5,542 out of 62,292
    • In bioinformatics: 1,067 out of 6,225
  • Year to date:
    • Site-wide: 1,105 out of 62,292
  • Since beginning of last month:
    • Site-wide: None out of 62,292

BROCKMAN: Deciphering variance in epigenomic regulators by k-mer factorization

genomics more details view paper
  • Downloaded 1,141 times
  • Download rankings, all-time:
    • Site-wide: 5,598 out of 62,292
    • In genomics: 951 out of 4,282
  • Year to date:
    • Site-wide: 33,020 out of 62,292
  • Since beginning of last month:
    • Site-wide: 34,132 out of 62,292

Single-cell profiles of retinal neurons differing in resilience to injury reveal neuroprotective genes

neuroscience more details view paper
  • Downloaded 971 times
  • Download rankings, all-time:
    • Site-wide: 7,286 out of 62,292
    • In neuroscience: 1,135 out of 11,115
  • Year to date:
    • Site-wide: 1,463 out of 62,292
  • Since beginning of last month:
    • Site-wide: 232 out of 62,292

Compressed sensing for imaging transcriptomics

molecular biology more details view paper
  • Downloaded 832 times
  • Download rankings, all-time:
    • Site-wide: 9,304 out of 62,292
    • In molecular biology: 279 out of 1,948
  • Year to date:
    • Site-wide: 1,923 out of 62,292
  • Since beginning of last month:
    • Site-wide: 340 out of 62,292

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

genomics more details view paper
  • Downloaded 773 times
  • Download rankings, all-time:
    • Site-wide: 10,369 out of 62,292
    • In genomics: 1,507 out of 4,282
  • Year to date:
    • Site-wide: 36,616 out of 62,292
  • Since beginning of last month:
    • Site-wide: 37,795 out of 62,292

The enteric nervous system of the human and mouse colon at a single-cell resolution

genomics more details view paper
  • Downloaded 726 times
  • Download rankings, all-time:
    • Site-wide: 11,376 out of 62,292
    • In genomics: 1,620 out of 4,282
  • Year to date:
    • Site-wide: 2,431 out of 62,292
  • Since beginning of last month:
    • Site-wide: 23,515 out of 62,292

Evolutionary analysis across mammals reveals distinct classes of long noncoding RNAs

evolutionary biology more details view paper
  • Downloaded 677 times
  • Download rankings, all-time:
    • Site-wide: 12,571 out of 62,292
    • In evolutionary biology: 896 out of 4,210
  • Year to date:
    • Site-wide: 52,930 out of 62,292
  • Since beginning of last month:
    • Site-wide: 43,726 out of 62,292

Acquired FGFR and FGF alterations confer resistance to estrogen receptor (ER) targeted therapy in ER+ metastatic breast cancer

cancer biology more details view paper
  • Downloaded 673 times
  • Download rankings, all-time:
    • Site-wide: 12,668 out of 62,292
    • In cancer biology: 376 out of 2,047
  • Year to date:
    • Site-wide: 2,782 out of 62,292
  • Since beginning of last month:
    • Site-wide: 1,803 out of 62,292

Conservation and divergence in modules of the transcriptional programs of the human and mouse immune systems

bioinformatics more details view paper
  • Downloaded 615 times
  • Download rankings, all-time:
    • Site-wide: 14,346 out of 62,292
    • In bioinformatics: 2,303 out of 6,225
  • Year to date:
    • Site-wide: 22,294 out of 62,292
  • Since beginning of last month:
    • Site-wide: 14,986 out of 62,292

Opposing immune and genetic forces shape oncogenic programs in synovial sarcoma

cancer biology more details view paper
  • Downloaded 454 times
  • Download rankings, all-time:
    • Site-wide: 21,168 out of 62,292
    • In cancer biology: 641 out of 2,047
  • Year to date:
    • Site-wide: 5,474 out of 62,292
  • Since beginning of last month:
    • Site-wide: 1,943 out of 62,292

Regulatory network controlling tumor-promoting inflammation in human cancers

cancer biology more details view paper
  • Downloaded 452 times
  • Download rankings, all-time:
    • Site-wide: 21,245 out of 62,292
    • In cancer biology: 644 out of 2,047
  • Year to date:
    • Site-wide: 21,898 out of 62,292
  • Since beginning of last month:
    • Site-wide: 20,262 out of 62,292

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