Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,446 bioRxiv papers from 319,713 authors.

Author: Aviv Regev

Rankings

  • All-time downloads: 164,148 (rank: 57 out of 319,669)
  • Categories:
    • bioengineering: 8,666 (rank: 20 (tie) out of 8,412)
    • bioinformatics: 25,238 (rank: 71 out of 27,710)
    • cancer biology: 7,479 (rank: 157 out of 21,049)
    • cell biology: 14,016 (rank: 20 out of 22,440)
    • developmental biology: 2,701 (rank: 287 (tie) out of 12,294)
    • evolutionary biology: 700 (rank: 5,885 (tie) out of 17,013)
    • genetics: 577 (rank: 16,380 (tie) out of 31,309)
    • genomics: 69,063 (rank: 98 out of 35,644)
    • immunology: 6,899 (rank: 76 out of 15,531)
    • molecular biology: 9,603 (rank: 71 out of 15,690)
    • neuroscience: 16,061 (rank: 191 out of 53,999)
    • systems biology: 3,145 (rank: 512 (tie) out of 9,638)

Downloads per author, site-wide

Preprints

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

cancer biology more details view paper

No bioRxiv download data for this paper yet.

CELL ATLAS OF THE HUMAN FOVEA AND PERIPHERAL RETINA

neuroscience more details view paper

No bioRxiv download data for this paper yet.

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,890 times
  • Download rankings, all-time:
    • Site-wide: 97 out of 73,447
    • In cell biology: 3 out of 3,624
  • Year to date:
    • Site-wide: 9,347 out of 73,447
  • Since beginning of last month:
    • Site-wide: 9,347 out of 73,447

Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming.

bioinformatics more details view paper
  • Downloaded 10,962 times
  • Download rankings, all-time:
    • Site-wide: 117 out of 73,447
    • In bioinformatics: 19 out of 7,156
  • Year to date:
    • Site-wide: 3,316 out of 73,447
  • Since beginning of last month:
    • Site-wide: 3,316 out of 73,447

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 9,600 times
  • Download rankings, all-time:
    • Site-wide: 153 out of 73,447
    • In genomics: 41 out of 4,872
  • Year to date:
    • Site-wide: 273 out of 73,447
  • Since beginning of last month:
    • Site-wide: 273 out of 73,447

Systematic comparative analysis of single cell RNA-sequencing methods

genomics more details view paper
  • Downloaded 9,056 times
  • Download rankings, all-time:
    • Site-wide: 172 out of 73,447
    • In genomics: 48 out of 4,872
  • Year to date:
    • Site-wide: 184 out of 73,447
  • Since beginning of last month:
    • Site-wide: 184 out of 73,447

DNA microscopy: Optics-free spatio-genetic imaging by a stand-alone chemical reaction

bioengineering more details view paper
  • Downloaded 8,666 times
  • Download rankings, all-time:
    • Site-wide: 188 out of 73,447
    • In bioengineering: 3 out of 1,529
  • Year to date:
    • Site-wide: 1,558 out of 73,447
  • Since beginning of last month:
    • Site-wide: 1,558 out of 73,447

DroNc-Seq: Deciphering cell types in human archived brain tissues by massively-parallel single nucleus RNA-seq

genomics more details view paper
  • Downloaded 6,626 times
  • Download rankings, all-time:
    • Site-wide: 304 out of 73,447
    • In genomics: 77 out of 4,872
  • Year to date:
    • Site-wide: 18,461 out of 73,447
  • Since beginning of last month:
    • Site-wide: 18,461 out of 73,447

STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

bioinformatics more details view paper
  • Downloaded 6,333 times
  • Download rankings, all-time:
    • Site-wide: 324 out of 73,447
    • In bioinformatics: 53 out of 7,156
  • Year to date:
    • Site-wide: 3,714 out of 73,447
  • Since beginning of last month:
    • Site-wide: 3,714 out of 73,447

High-density spatial transcriptomics arrays for in situ tissue profiling

genomics more details view paper
  • Downloaded 5,691 times
  • Download rankings, all-time:
    • Site-wide: 392 out of 73,447
    • In genomics: 97 out of 4,872
  • Year to date:
    • Site-wide: 1,619 out of 73,447
  • Since beginning of last month:
    • Site-wide: 1,619 out of 73,447

Deciphering eukaryotic cis-regulatory logic with 100 million random promoters

genomics more details view paper
  • Downloaded 5,281 times
  • Download rankings, all-time:
    • Site-wide: 448 out of 73,447
    • In genomics: 112 out of 4,872
  • Year to date:
    • Site-wide: 4,288 out of 73,447
  • Since beginning of last month:
    • Site-wide: 4,288 out of 73,447

Genetic determinants of co-accessible chromatin regions in T cell activation across humans

genomics more details view paper
  • Downloaded 4,696 times
  • Download rankings, all-time:
    • Site-wide: 559 out of 73,447
    • In genomics: 138 out of 4,872
  • Year to date:
    • Site-wide: 12,756 out of 73,447
  • Since beginning of last month:
    • Site-wide: 12,756 out of 73,447

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

molecular biology more details view paper
  • Downloaded 4,508 times
  • Download rankings, all-time:
    • Site-wide: 615 out of 73,447
    • In molecular biology: 15 out of 2,391
  • Year to date:
    • Site-wide: 13,361 out of 73,447
  • Since beginning of last month:
    • Site-wide: 13,361 out of 73,447

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

genomics more details view paper
  • Downloaded 4,232 times
  • Download rankings, all-time:
    • Site-wide: 692 out of 73,447
    • In genomics: 168 out of 4,872
  • Year to date:
    • Site-wide: None out of 73,447
  • Since beginning of last month:
    • Site-wide: None out of 73,447

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

genomics more details view paper
  • Downloaded 3,975 times
  • Download rankings, all-time:
    • Site-wide: 772 out of 73,447
    • In genomics: 192 out of 4,872
  • Year to date:
    • Site-wide: 138 out of 73,447
  • Since beginning of last month:
    • Site-wide: 138 out of 73,447

High-resolution interrogation of functional elements in the noncoding genome

molecular biology more details view paper
  • Downloaded 3,804 times
  • Download rankings, all-time:
    • Site-wide: 846 out of 73,447
    • In molecular biology: 22 out of 2,391
  • Year to date:
    • Site-wide: 36,162 out of 73,447
  • Since beginning of last month:
    • Site-wide: 36,162 out of 73,447

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

genomics more details view paper
  • Downloaded 3,610 times
  • Download rankings, all-time:
    • Site-wide: 941 out of 73,447
    • In genomics: 232 out of 4,872
  • Year to date:
    • Site-wide: 5,227 out of 73,447
  • Since beginning of last month:
    • Site-wide: 5,227 out of 73,447

Div-Seq: A single nucleus RNA-Seq method reveals dynamics of rare adult newborn neurons in the CNS

neuroscience more details view paper
  • Downloaded 3,561 times
  • Download rankings, all-time:
    • Site-wide: 966 out of 73,447
    • In neuroscience: 128 out of 13,203
  • Year to date:
    • Site-wide: 47,180 out of 73,447
  • Since beginning of last month:
    • Site-wide: 47,180 out of 73,447

The enteric nervous system of the human and mouse colon at a single-cell resolution

genomics more details view paper
  • Downloaded 3,497 times
  • Download rankings, all-time:
    • Site-wide: 994 out of 73,447
    • In genomics: 243 out of 4,872
  • Year to date:
    • Site-wide: 211 out of 73,447
  • Since beginning of last month:
    • Site-wide: 211 out of 73,447

Single-cell transcriptomics of the aged mouse brain reveals convergent, divergent and unique aging signatures

neuroscience more details view paper
  • Downloaded 3,430 times
  • Download rankings, all-time:
    • Site-wide: 1,027 out of 73,447
    • In neuroscience: 141 out of 13,203
  • Year to date:
    • Site-wide: 4,744 out of 73,447
  • Since beginning of last month:
    • Site-wide: 4,744 out of 73,447

A single cell-based atlas of human microglial states reveals associations with neurological disorders and histopathological features of the aging brain

neuroscience more details view paper
  • Downloaded 3,318 times
  • Download rankings, all-time:
    • Site-wide: 1,092 out of 73,447
    • In neuroscience: 154 out of 13,203
  • Year to date:
    • Site-wide: 4,590 out of 73,447
  • Since beginning of last month:
    • Site-wide: 4,590 out of 73,447

In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with Autism risk genes

genomics more details view paper
  • Downloaded 3,227 times
  • Download rankings, all-time:
    • Site-wide: 1,164 out of 73,447
    • In genomics: 268 out of 4,872
  • Year to date:
    • Site-wide: 343 out of 73,447
  • Since beginning of last month:
    • Site-wide: 343 out of 73,447

Composite measurements and molecular compressed sensing for highly efficient transcriptomics

systems biology more details view paper
  • Downloaded 3,145 times
  • Download rankings, all-time:
    • Site-wide: 1,214 out of 73,447
    • In systems biology: 29 out of 2,012
  • Year to date:
    • Site-wide: 46,470 out of 73,447
  • Since beginning of last month:
    • Site-wide: 46,470 out of 73,447

Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces

bioinformatics more details view paper
  • Downloaded 3,129 times
  • Download rankings, all-time:
    • Site-wide: 1,229 out of 73,447
    • In bioinformatics: 241 out of 7,156
  • Year to date:
    • Site-wide: 314 out of 73,447
  • Since beginning of last month:
    • Site-wide: 314 out of 73,447

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

developmental biology more details view paper
  • Downloaded 2,701 times
  • Download rankings, all-time:
    • Site-wide: 1,583 out of 73,447
    • In developmental biology: 20 out of 2,204
  • Year to date:
    • Site-wide: 1,838 out of 73,447
  • Since beginning of last month:
    • Site-wide: 1,838 out of 73,447

Pan-cancer single cell RNA-seq uncovers recurring programs of cellular heterogeneity

cancer biology more details view paper
  • Downloaded 2,402 times
  • Download rankings, all-time:
    • Site-wide: 1,972 out of 73,447
    • In cancer biology: 53 out of 2,515
  • Year to date:
    • Site-wide: 1,529 out of 73,447
  • Since beginning of last month:
    • Site-wide: 1,529 out of 73,447

Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age

immunology more details view paper
  • Downloaded 2,172 times
  • Download rankings, all-time:
    • Site-wide: 2,351 out of 73,447
    • In immunology: 36 out of 1,911
  • Year to date:
    • Site-wide: 9,120 out of 73,447
  • Since beginning of last month:
    • Site-wide: 9,120 out of 73,447

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

neuroscience more details view paper
  • Downloaded 2,141 times
  • Download rankings, all-time:
    • Site-wide: 2,407 out of 73,447
    • In neuroscience: 361 out of 13,203
  • Year to date:
    • Site-wide: 7,606 out of 73,447
  • Since beginning of last month:
    • Site-wide: 7,606 out of 73,447

T helper cells modulate intestinal stem cell renewal and differentiation

immunology more details view paper
  • Downloaded 2,053 times
  • Download rankings, all-time:
    • Site-wide: 2,590 out of 73,447
    • In immunology: 41 out of 1,911
  • Year to date:
    • Site-wide: 14,389 out of 73,447
  • Since beginning of last month:
    • Site-wide: 14,389 out of 73,447

Landscape of X chromosome inactivation across human tissues

genomics more details view paper
  • Downloaded 1,876 times
  • Download rankings, all-time:
    • Site-wide: 3,021 out of 73,447
    • In genomics: 594 out of 4,872
  • Year to date:
    • Site-wide: 65,598 out of 73,447
  • Since beginning of last month:
    • Site-wide: 65,598 out of 73,447

A cellular and spatial map of the choroid plexus across brain ventricles and ages

neuroscience more details view paper
  • Downloaded 1,844 times
  • Download rankings, all-time:
    • Site-wide: 3,113 out of 73,447
    • In neuroscience: 477 out of 13,203
  • Year to date:
    • Site-wide: 1,999 out of 73,447
  • Since beginning of last month:
    • Site-wide: 1,999 out of 73,447

Skin inflammation driven by differentiation of quiescent tissue-resident ILCs into a spectrum of pathogenic effectors

immunology more details view paper
  • Downloaded 1,797 times
  • Download rankings, all-time:
    • Site-wide: 3,255 out of 73,447
    • In immunology: 49 out of 1,911
  • Year to date:
    • Site-wide: 1,927 out of 73,447
  • Since beginning of last month:
    • Site-wide: 1,927 out of 73,447

Single-cell profiles of retinal neurons differing in resilience to injury reveal neuroprotective genes

neuroscience more details view paper
  • Downloaded 1,767 times
  • Download rankings, all-time:
    • Site-wide: 3,345 out of 73,447
    • In neuroscience: 519 out of 13,203
  • Year to date:
    • Site-wide: 2,122 out of 73,447
  • Since beginning of last month:
    • Site-wide: 2,122 out of 73,447

A quantitative model for characterizing the evolutionary history of mammalian gene expression

genomics more details view paper
  • Downloaded 1,757 times
  • Download rankings, all-time:
    • Site-wide: 3,386 out of 73,447
    • In genomics: 645 out of 4,872
  • Year to date:
    • Site-wide: 42,554 out of 73,447
  • Since beginning of last month:
    • Site-wide: 42,554 out of 73,447

Longitudinal single cell profiling of regulatory T cells identifies IL-33 as a driver of tumor immunosuppression

cancer biology more details view paper
  • Downloaded 1,615 times
  • Download rankings, all-time:
    • Site-wide: 3,912 out of 73,447
    • In cancer biology: 101 out of 2,515
  • Year to date:
    • Site-wide: 11,337 out of 73,447
  • Since beginning of last month:
    • Site-wide: 11,337 out of 73,447

Combinatorial prediction of marker panels from single-cell transcriptomic data

bioinformatics more details view paper
  • Downloaded 1,584 times
  • Download rankings, all-time:
    • Site-wide: 4,045 out of 73,447
    • In bioinformatics: 798 out of 7,156
  • Year to date:
    • Site-wide: 20,372 out of 73,447
  • Since beginning of last month:
    • Site-wide: 20,372 out of 73,447

Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics

genomics more details view paper
  • Downloaded 1,580 times
  • Download rankings, all-time:
    • Site-wide: 4,067 out of 73,447
    • In genomics: 727 out of 4,872
  • Year to date:
    • Site-wide: 11,352 out of 73,447
  • Since beginning of last month:
    • Site-wide: 11,352 out of 73,447

GeNets: A unified web platform for network-based analyses of genomic data

genomics more details view paper
  • Downloaded 1,520 times
  • Download rankings, all-time:
    • Site-wide: 4,343 out of 73,447
    • In genomics: 778 out of 4,872
  • Year to date:
    • Site-wide: 63,848 out of 73,447
  • Since beginning of last month:
    • Site-wide: 63,848 out of 73,447

Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

cell biology more details view paper
  • Downloaded 1,354 times
  • Download rankings, all-time:
    • Site-wide: 5,241 out of 73,447
    • In cell biology: 152 out of 3,624
  • Year to date:
    • Site-wide: 3,008 out of 73,447
  • Since beginning of last month:
    • Site-wide: 3,008 out of 73,447

scSVA: an interactive tool for big data visualization and exploration in single-cell omics

bioinformatics more details view paper
  • Downloaded 1,334 times
  • Download rankings, all-time:
    • Site-wide: 5,386 out of 73,447
    • In bioinformatics: 1,016 out of 7,156
  • Year to date:
    • Site-wide: 10,470 out of 73,447
  • Since beginning of last month:
    • Site-wide: 10,470 out of 73,447

Compressed sensing for imaging transcriptomics

molecular biology more details view paper
  • Downloaded 1,291 times
  • Download rankings, all-time:
    • Site-wide: 5,670 out of 73,447
    • In molecular biology: 175 out of 2,391
  • Year to date:
    • Site-wide: 3,005 out of 73,447
  • Since beginning of last month:
    • Site-wide: 3,005 out of 73,447

BROCKMAN: Deciphering variance in epigenomic regulators by k-mer factorization

genomics more details view paper
  • Downloaded 1,193 times
  • Download rankings, all-time:
    • Site-wide: 6,507 out of 73,447
    • In genomics: 1,061 out of 4,872
  • Year to date:
    • Site-wide: 29,216 out of 73,447
  • Since beginning of last month:
    • Site-wide: 29,216 out of 73,447

Acquired FGFR and FGF alterations confer resistance to estrogen receptor (ER) targeted therapy in ER+ metastatic breast cancer

cancer biology more details view paper
  • Downloaded 1,084 times
  • Download rankings, all-time:
    • Site-wide: 7,603 out of 73,447
    • In cancer biology: 206 out of 2,515
  • Year to date:
    • Site-wide: 5,836 out of 73,447
  • Since beginning of last month:
    • Site-wide: 5,836 out of 73,447

Multiplexed single-cell profiling of post-perturbation transcriptional responses to define cancer vulnerabilities and therapeutic mechanism of action

cancer biology more details view paper
  • Downloaded 1,056 times
  • Download rankings, all-time:
    • Site-wide: 7,941 out of 73,447
    • In cancer biology: 220 out of 2,515
  • Year to date:
    • Site-wide: 1,502 out of 73,447
  • Since beginning of last month:
    • Site-wide: 1,502 out of 73,447

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

genomics more details view paper
  • Downloaded 824 times
  • Download rankings, all-time:
    • Site-wide: 11,853 out of 73,447
    • In genomics: 1,667 out of 4,872
  • Year to date:
    • Site-wide: 42,039 out of 73,447
  • Since beginning of last month:
    • Site-wide: 42,039 out of 73,447

Opposing immune and genetic forces shape oncogenic programs in synovial sarcoma

cancer biology more details view paper
  • Downloaded 777 times
  • Download rankings, all-time:
    • Site-wide: 12,909 out of 73,447
    • In cancer biology: 381 out of 2,515
  • Year to date:
    • Site-wide: 2,696 out of 73,447
  • Since beginning of last month:
    • Site-wide: 2,696 out of 73,447

Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq

bioinformatics more details view paper
  • Downloaded 764 times
  • Download rankings, all-time:
    • Site-wide: 13,237 out of 73,447
    • In bioinformatics: 2,141 out of 7,156
  • Year to date:
    • Site-wide: 2,023 out of 73,447
  • Since beginning of last month:
    • Site-wide: 2,023 out of 73,447

Evolutionary analysis across mammals reveals distinct classes of long noncoding RNAs

evolutionary biology more details view paper
  • Downloaded 700 times
  • Download rankings, all-time:
    • Site-wide: 15,059 out of 73,447
    • In evolutionary biology: 1,007 out of 4,742
  • Year to date:
    • Site-wide: 70,814 out of 73,447
  • Since beginning of last month:
    • Site-wide: 70,814 out of 73,447

Conservation and divergence in modules of the transcriptional programs of the human and mouse immune systems

bioinformatics more details view paper
  • Downloaded 684 times
  • Download rankings, all-time:
    • Site-wide: 15,524 out of 73,447
    • In bioinformatics: 2,422 out of 7,156
  • Year to date:
    • Site-wide: 25,644 out of 73,447
  • Since beginning of last month:
    • Site-wide: 25,644 out of 73,447

Genetic predisposition to myeloproliferative neoplasms implicates hematopoietic stem cell biology

genetics more details view paper
  • Downloaded 577 times
  • Download rankings, all-time:
    • Site-wide: 19,879 out of 73,447
    • In genetics: 1,310 out of 4,031
  • Year to date:
    • Site-wide: 7,221 out of 73,447
  • Since beginning of last month:
    • Site-wide: 7,221 out of 73,447

Regulatory network controlling tumor-promoting inflammation in human cancers

cancer biology more details view paper
  • Downloaded 545 times
  • Download rankings, all-time:
    • Site-wide: 21,437 out of 73,447
    • In cancer biology: 668 out of 2,515
  • Year to date:
    • Site-wide: 12,963 out of 73,447
  • Since beginning of last month:
    • Site-wide: 12,963 out of 73,447

Shuffle-Seq: En masse combinatorial encoding for n-way genetic interaction screens

genomics more details view paper
  • Downloaded 492 times
  • Download rankings, all-time:
    • Site-wide: 24,424 out of 73,447
    • In genomics: 2,640 out of 4,872
  • Year to date:
    • Site-wide: 4,118 out of 73,447
  • Since beginning of last month:
    • Site-wide: 4,118 out of 73,447

Single-nucleus RNA-Seq reveals a new type of brown adipocyte regulating thermogenesis

cell biology more details view paper
  • Downloaded 487 times
  • Download rankings, all-time:
    • Site-wide: 24,755 out of 73,447
    • In cell biology: 1,140 out of 3,624
  • Year to date:
    • Site-wide: 346 out of 73,447
  • Since beginning of last month:
    • Site-wide: 346 out of 73,447

An endogenous glucocorticoid-cytokine signaling circuit promotes CD8+ T cell dysfunction in the tumor microenvironment

immunology more details view paper
  • Downloaded 466 times
  • Download rankings, all-time:
    • Site-wide: 26,060 out of 73,447
    • In immunology: 528 out of 1,911
  • Year to date:
    • Site-wide: 7,123 out of 73,447
  • Since beginning of last month:
    • Site-wide: 7,123 out of 73,447

MAUDE: Inferring expression changes in sorting-based CRISPR screens

bioinformatics more details view paper
  • Downloaded 448 times
  • Download rankings, all-time:
    • Site-wide: 27,339 out of 73,447
    • In bioinformatics: 3,668 out of 7,156
  • Year to date:
    • Site-wide: 6,105 out of 73,447
  • Since beginning of last month:
    • Site-wide: 6,105 out of 73,447

Metabolic and Epigenomic Regulation of Th17/Treg Balance by the Polyamine Pathway

immunology more details view paper
  • Downloaded 411 times
  • Download rankings, all-time:
    • Site-wide: 30,069 out of 73,447
    • In immunology: 626 out of 1,911
  • Year to date:
    • Site-wide: 470 out of 73,447
  • Since beginning of last month:
    • Site-wide: 470 out of 73,447

In Silico Modeling of Metabolic State in Single Th17 Cells Reveals Novel Regulators of Inflammation and Autoimmunity

genomics more details view paper
  • Downloaded 330 times
  • Download rankings, all-time:
    • Site-wide: 37,695 out of 73,447
    • In genomics: 3,469 out of 4,872
  • Year to date:
    • Site-wide: 686 out of 73,447
  • Since beginning of last month:
    • Site-wide: 686 out of 73,447

Cell Atlas of Aqueous Humor Outflow Pathways in Eyes of Humans and Four Model Species Provides Insights into Glaucoma Pathogenesis

cell biology more details view paper
  • Downloaded 285 times
  • Download rankings, all-time:
    • Site-wide: 42,789 out of 73,447
    • In cell biology: 2,085 out of 3,624
  • Year to date:
    • Site-wide: 886 out of 73,447
  • Since beginning of last month:
    • Site-wide: 886 out of 73,447

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News