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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,113 bioRxiv papers from 295,324 authors.

Author: Aviv Regev

Rankings

  • All-time downloads: 148,159 (rank: 34 out of 295,131)
  • Categories:
    • bioengineering: 8,339 (rank: 19 (tie) out of 7,476)
    • bioinformatics: 21,081 (rank: 80 out of 25,701)
    • cancer biology: 5,455 (rank: 193 out of 18,672)
    • cell biology: 14,637 (rank: 15 out of 19,926)
    • developmental biology: 2,400 (rank: 302 (tie) out of 11,139)
    • evolutionary biology: 686 (rank: 5,371 (tie) out of 16,096)
    • genetics: 447 (rank: 17,738 (tie) out of 29,432)
    • genomics: 62,020 (rank: 100 out of 33,598)
    • immunology: 5,939 (rank: 89 out of 13,871)
    • molecular biology: 9,216 (rank: 53 out of 14,193)
    • neuroscience: 14,827 (rank: 175 out of 49,431)
    • systems biology: 3,112 (rank: 424 (tie) out of 8,899)

Downloads per author, site-wide

Preprints

Shuffle-Seq: En masse combinatorial encoding for n-way genetic interaction screens

genomics more details view paper

No bioRxiv download data for this paper yet.

Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces

bioinformatics more details view paper

No bioRxiv download data for this paper yet.

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,789 times
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    • Site-wide: 86 out of 67,044
    • In cell biology: 3 out of 3,248
  • Year to date:
    • Site-wide: 4,751 out of 67,044
  • Since beginning of last month:
    • Site-wide: 6,967 out of 67,044

Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming.

bioinformatics more details view paper
  • Downloaded 10,734 times
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    • Site-wide: 102 out of 67,044
    • In bioinformatics: 18 out of 6,614
  • Year to date:
    • Site-wide: 332 out of 67,044
  • Since beginning of last month:
    • Site-wide: 1,244 out of 67,044

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 8,535 times
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    • Site-wide: 161 out of 67,044
    • In genomics: 49 out of 4,558
  • Year to date:
    • Site-wide: 33 out of 67,044
  • Since beginning of last month:
    • Site-wide: 134 out of 67,044

DNA microscopy: Optics-free spatio-genetic imaging by a stand-alone chemical reaction

bioengineering more details view paper
  • Downloaded 8,339 times
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    • Site-wide: 170 out of 67,044
    • In bioengineering: 3 out of 1,345
  • Year to date:
    • Site-wide: 125 out of 67,044
  • Since beginning of last month:
    • Site-wide: 1,785 out of 67,044

Systematic comparative analysis of single cell RNA-sequencing methods

genomics more details view paper
  • Downloaded 7,865 times
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    • Site-wide: 189 out of 67,044
    • In genomics: 56 out of 4,558
  • Year to date:
    • Site-wide: 45 out of 67,044
  • Since beginning of last month:
    • Site-wide: 95 out of 67,044

DroNc-Seq: Deciphering cell types in human archived brain tissues by massively-parallel single nucleus RNA-seq

genomics more details view paper
  • Downloaded 6,567 times
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    • Site-wide: 269 out of 67,044
    • In genomics: 75 out of 4,558
  • Year to date:
    • Site-wide: 7,518 out of 67,044
  • Since beginning of last month:
    • Site-wide: 9,753 out of 67,044

STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

bioinformatics more details view paper
  • Downloaded 6,119 times
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    • Site-wide: 308 out of 67,044
    • In bioinformatics: 53 out of 6,614
  • Year to date:
    • Site-wide: 780 out of 67,044
  • Since beginning of last month:
    • Site-wide: 1,937 out of 67,044

High-density spatial transcriptomics arrays for in situ tissue profiling

genomics more details view paper
  • Downloaded 5,339 times
  • Download rankings, all-time:
    • Site-wide: 391 out of 67,044
    • In genomics: 101 out of 4,558
  • Year to date:
    • Site-wide: 81 out of 67,044
  • Since beginning of last month:
    • Site-wide: 801 out of 67,044

Deciphering eukaryotic cis-regulatory logic with 100 million random promoters

genomics more details view paper
  • Downloaded 5,039 times
  • Download rankings, all-time:
    • Site-wide: 428 out of 67,044
    • In genomics: 113 out of 4,558
  • Year to date:
    • Site-wide: 2,264 out of 67,044
  • Since beginning of last month:
    • Site-wide: 7,822 out of 67,044

Genetic determinants of co-accessible chromatin regions in T cell activation across humans

genomics more details view paper
  • Downloaded 4,625 times
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    • Site-wide: 506 out of 67,044
    • In genomics: 130 out of 4,558
  • Year to date:
    • Site-wide: 12,021 out of 67,044
  • Since beginning of last month:
    • Site-wide: 34,516 out of 67,044

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

molecular biology more details view paper
  • Downloaded 4,436 times
  • Download rankings, all-time:
    • Site-wide: 559 out of 67,044
    • In molecular biology: 13 out of 2,139
  • Year to date:
    • Site-wide: 16,011 out of 67,044
  • Since beginning of last month:
    • Site-wide: 22,733 out of 67,044

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

genomics more details view paper
  • Downloaded 4,232 times
  • Download rankings, all-time:
    • Site-wide: 608 out of 67,044
    • In genomics: 157 out of 4,558
  • Year to date:
    • Site-wide: 253 out of 67,044
  • Since beginning of last month:
    • Site-wide: None out of 67,044

High-resolution interrogation of functional elements in the noncoding genome

molecular biology more details view paper
  • Downloaded 3,759 times
  • Download rankings, all-time:
    • Site-wide: 771 out of 67,044
    • In molecular biology: 19 out of 2,139
  • Year to date:
    • Site-wide: 42,138 out of 67,044
  • Since beginning of last month:
    • Site-wide: None out of 67,044

Div-Seq: A single nucleus RNA-Seq method reveals dynamics of rare adult newborn neurons in the CNS

neuroscience more details view paper
  • Downloaded 3,537 times
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    • Site-wide: 857 out of 67,044
    • In neuroscience: 113 out of 12,017
  • Year to date:
    • Site-wide: 30,648 out of 67,044
  • Since beginning of last month:
    • Site-wide: 24,606 out of 67,044

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

genomics more details view paper
  • Downloaded 3,452 times
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    • Site-wide: 901 out of 67,044
    • In genomics: 234 out of 4,558
  • Year to date:
    • Site-wide: 364 out of 67,044
  • Since beginning of last month:
    • Site-wide: 4,194 out of 67,044

Single-cell transcriptomics of the aged mouse brain reveals convergent, divergent and unique aging signatures

neuroscience more details view paper
  • Downloaded 3,235 times
  • Download rankings, all-time:
    • Site-wide: 1,017 out of 67,044
    • In neuroscience: 145 out of 12,017
  • Year to date:
    • Site-wide: 418 out of 67,044
  • Since beginning of last month:
    • Site-wide: 1,030 out of 67,044

A single cell-based atlas of human microglial states reveals associations with neurological disorders and histopathological features of the aging brain

neuroscience more details view paper
  • Downloaded 3,148 times
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    • Site-wide: 1,074 out of 67,044
    • In neuroscience: 155 out of 12,017
  • Year to date:
    • Site-wide: 695 out of 67,044
  • Since beginning of last month:
    • Site-wide: 1,810 out of 67,044

Composite measurements and molecular compressed sensing for highly efficient transcriptomics

systems biology more details view paper
  • Downloaded 3,112 times
  • Download rankings, all-time:
    • Site-wide: 1,103 out of 67,044
    • In systems biology: 22 out of 1,863
  • Year to date:
    • Site-wide: 21,347 out of 67,044
  • Since beginning of last month:
    • Site-wide: 34,156 out of 67,044

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

genomics more details view paper
  • Downloaded 2,782 times
  • Download rankings, all-time:
    • Site-wide: 1,346 out of 67,044
    • In genomics: 307 out of 4,558
  • Year to date:
    • Site-wide: 271 out of 67,044
  • Since beginning of last month:
    • Site-wide: 101 out of 67,044

The enteric nervous system of the human and mouse colon at a single-cell resolution

genomics more details view paper
  • Downloaded 2,589 times
  • Download rankings, all-time:
    • Site-wide: 1,524 out of 67,044
    • In genomics: 344 out of 4,558
  • Year to date:
    • Site-wide: 312 out of 67,044
  • Since beginning of last month:
    • Site-wide: 491 out of 67,044

In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with Autism risk genes

genomics more details view paper
  • Downloaded 2,464 times
  • Download rankings, all-time:
    • Site-wide: 1,667 out of 67,044
    • In genomics: 371 out of 4,558
  • Year to date:
    • Site-wide: 349 out of 67,044
  • Since beginning of last month:
    • Site-wide: 170 out of 67,044

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

developmental biology more details view paper
  • Downloaded 2,400 times
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    • Site-wide: 1,754 out of 67,044
    • In developmental biology: 21 out of 1,989
  • Year to date:
    • Site-wide: 373 out of 67,044
  • Since beginning of last month:
    • Site-wide: 2,900 out of 67,044

Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age

immunology more details view paper
  • Downloaded 2,071 times
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    • Site-wide: 2,284 out of 67,044
    • In immunology: 30 out of 1,706
  • Year to date:
    • Site-wide: 24,058 out of 67,044
  • Since beginning of last month:
    • Site-wide: 42,230 out of 67,044

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

neuroscience more details view paper
  • Downloaded 2,047 times
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    • Site-wide: 2,333 out of 67,044
    • In neuroscience: 349 out of 12,017
  • Year to date:
    • Site-wide: 1,603 out of 67,044
  • Since beginning of last month:
    • Site-wide: 3,173 out of 67,044

Pan-cancer single cell RNA-seq uncovers recurring programs of cellular heterogeneity

cancer biology more details view paper
  • Downloaded 2,038 times
  • Download rankings, all-time:
    • Site-wide: 2,353 out of 67,044
    • In cancer biology: 57 out of 2,261
  • Year to date:
    • Site-wide: 515 out of 67,044
  • Since beginning of last month:
    • Site-wide: 179 out of 67,044

T helper cells modulate intestinal stem cell renewal and differentiation

immunology more details view paper
  • Downloaded 1,981 times
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    • Site-wide: 2,468 out of 67,044
    • In immunology: 32 out of 1,706
  • Year to date:
    • Site-wide: 6,941 out of 67,044
  • Since beginning of last month:
    • Site-wide: 22,756 out of 67,044

Landscape of X chromosome inactivation across human tissues

genomics more details view paper
  • Downloaded 1,858 times
  • Download rankings, all-time:
    • Site-wide: 2,736 out of 67,044
    • In genomics: 550 out of 4,558
  • Year to date:
    • Site-wide: 40,150 out of 67,044
  • Since beginning of last month:
    • Site-wide: 40,497 out of 67,044

A quantitative model for characterizing the evolutionary history of mammalian gene expression

genomics more details view paper
  • Downloaded 1,728 times
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    • Site-wide: 3,110 out of 67,044
    • In genomics: 613 out of 4,558
  • Year to date:
    • Site-wide: 13,929 out of 67,044
  • Since beginning of last month:
    • Site-wide: 30,814 out of 67,044

A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia demonstrates cancer-crosstalk with stroma to impair normal tissue function

cell biology more details view paper
  • Downloaded 1,708 times
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    • Site-wide: 3,165 out of 67,044
    • In cell biology: 87 out of 3,248
  • Year to date:
    • Site-wide: 722 out of 67,044
  • Since beginning of last month:
    • Site-wide: 10,724 out of 67,044

Skin inflammation driven by differentiation of quiescent tissue-resident ILCs into a spectrum of pathogenic effectors

immunology more details view paper
  • Downloaded 1,563 times
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    • Site-wide: 3,668 out of 67,044
    • In immunology: 53 out of 1,706
  • Year to date:
    • Site-wide: 1,857 out of 67,044
  • Since beginning of last month:
    • Site-wide: 3,534 out of 67,044

Combinatorial prediction of marker panels from single-cell transcriptomic data

bioinformatics more details view paper
  • Downloaded 1,531 times
  • Download rankings, all-time:
    • Site-wide: 3,797 out of 67,044
    • In bioinformatics: 759 out of 6,614
  • Year to date:
    • Site-wide: 878 out of 67,044
  • Since beginning of last month:
    • Site-wide: 4,736 out of 67,044

A cellular and spatial map of the choroid plexus across brain ventricles and ages

neuroscience more details view paper
  • Downloaded 1,522 times
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    • Site-wide: 3,834 out of 67,044
    • In neuroscience: 603 out of 12,017
  • Year to date:
    • Site-wide: 890 out of 67,044
  • Since beginning of last month:
    • Site-wide: 1,779 out of 67,044

GeNets: A unified web platform for network-based analyses of genomic data

genomics more details view paper
  • Downloaded 1,504 times
  • Download rankings, all-time:
    • Site-wide: 3,926 out of 67,044
    • In genomics: 722 out of 4,558
  • Year to date:
    • Site-wide: 45,100 out of 67,044
  • Since beginning of last month:
    • Site-wide: 20,811 out of 67,044

Longitudinal single cell profiling of regulatory T cells identifies IL-33 as a driver of tumor immunosuppression

cancer biology more details view paper
  • Downloaded 1,499 times
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    • Site-wide: 3,954 out of 67,044
    • In cancer biology: 101 out of 2,261
  • Year to date:
    • Site-wide: 918 out of 67,044
  • Since beginning of last month:
    • Site-wide: 5,557 out of 67,044

Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics

genomics more details view paper
  • Downloaded 1,491 times
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    • Site-wide: 3,992 out of 67,044
    • In genomics: 734 out of 4,558
  • Year to date:
    • Site-wide: 925 out of 67,044
  • Since beginning of last month:
    • Site-wide: 2,298 out of 67,044

Single-cell profiles of retinal neurons differing in resilience to injury reveal neuroprotective genes

neuroscience more details view paper
  • Downloaded 1,338 times
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    • Site-wide: 4,772 out of 67,044
    • In neuroscience: 740 out of 12,017
  • Year to date:
    • Site-wide: 1,154 out of 67,044
  • Since beginning of last month:
    • Site-wide: 1,040 out of 67,044

scSVA: an interactive tool for big data visualization and exploration in single-cell omics

bioinformatics more details view paper
  • Downloaded 1,262 times
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    • Site-wide: 5,251 out of 67,044
    • In bioinformatics: 1,005 out of 6,614
  • Year to date:
    • Site-wide: 1,290 out of 67,044
  • Since beginning of last month:
    • Site-wide: 9,672 out of 67,044

BROCKMAN: Deciphering variance in epigenomic regulators by k-mer factorization

genomics more details view paper
  • Downloaded 1,160 times
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    • Site-wide: 6,049 out of 67,044
    • In genomics: 1,011 out of 4,558
  • Year to date:
    • Site-wide: 36,778 out of 67,044
  • Since beginning of last month:
    • Site-wide: 57,668 out of 67,044

Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

cell biology more details view paper
  • Downloaded 1,140 times
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    • Site-wide: 6,218 out of 67,044
    • In cell biology: 192 out of 3,248
  • Year to date:
    • Site-wide: 1,537 out of 67,044
  • Since beginning of last month:
    • Site-wide: 3,441 out of 67,044

Compressed sensing for imaging transcriptomics

molecular biology more details view paper
  • Downloaded 1,021 times
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    • Site-wide: 7,430 out of 67,044
    • In molecular biology: 227 out of 2,139
  • Year to date:
    • Site-wide: 1,844 out of 67,044
  • Since beginning of last month:
    • Site-wide: 2,842 out of 67,044

Acquired FGFR and FGF alterations confer resistance to estrogen receptor (ER) targeted therapy in ER+ metastatic breast cancer

cancer biology more details view paper
  • Downloaded 859 times
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    • Site-wide: 9,822 out of 67,044
    • In cancer biology: 279 out of 2,261
  • Year to date:
    • Site-wide: 2,496 out of 67,044
  • Since beginning of last month:
    • Site-wide: 2,598 out of 67,044

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

genomics more details view paper
  • Downloaded 790 times
  • Download rankings, all-time:
    • Site-wide: 11,167 out of 67,044
    • In genomics: 1,609 out of 4,558
  • Year to date:
    • Site-wide: 40,837 out of 67,044
  • Since beginning of last month:
    • Site-wide: 55,156 out of 67,044

Evolutionary analysis across mammals reveals distinct classes of long noncoding RNAs

evolutionary biology more details view paper
  • Downloaded 686 times
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    • Site-wide: 13,716 out of 67,044
    • In evolutionary biology: 954 out of 4,461
  • Year to date:
    • Site-wide: 59,214 out of 67,044
  • Since beginning of last month:
    • Site-wide: 63,101 out of 67,044

Conservation and divergence in modules of the transcriptional programs of the human and mouse immune systems

bioinformatics more details view paper
  • Downloaded 648 times
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    • Site-wide: 14,801 out of 67,044
    • In bioinformatics: 2,336 out of 6,614
  • Year to date:
    • Site-wide: 23,614 out of 67,044
  • Since beginning of last month:
    • Site-wide: 17,713 out of 67,044

Opposing immune and genetic forces shape oncogenic programs in synovial sarcoma

cancer biology more details view paper
  • Downloaded 585 times
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    • Site-wide: 17,094 out of 67,044
    • In cancer biology: 514 out of 2,261
  • Year to date:
    • Site-wide: 4,860 out of 67,044
  • Since beginning of last month:
    • Site-wide: 3,203 out of 67,044

Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq

bioinformatics more details view paper
  • Downloaded 478 times
  • Download rankings, all-time:
    • Site-wide: 22,162 out of 67,044
    • In bioinformatics: 3,177 out of 6,614
  • Year to date:
    • Site-wide: 6,831 out of 67,044
  • Since beginning of last month:
    • Site-wide: 367 out of 67,044

Regulatory network controlling tumor-promoting inflammation in human cancers

cancer biology more details view paper
  • Downloaded 474 times
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    • Site-wide: 22,391 out of 67,044
    • In cancer biology: 683 out of 2,261
  • Year to date:
    • Site-wide: 24,959 out of 67,044
  • Since beginning of last month:
    • Site-wide: 20,093 out of 67,044

Genetic predisposition to myeloproliferative neoplasms implicates hematopoietic stem cell biology

genetics more details view paper
  • Downloaded 447 times
  • Download rankings, all-time:
    • Site-wide: 24,023 out of 67,044
    • In genetics: 1,584 out of 3,773
  • Year to date:
    • Site-wide: 7,654 out of 67,044
  • Since beginning of last month:
    • Site-wide: 4,040 out of 67,044

An endogenous glucocorticoid-cytokine signaling circuit promotes CD8+ T cell dysfunction in the tumor microenvironment

immunology more details view paper
  • Downloaded 324 times
  • Download rankings, all-time:
    • Site-wide: 33,619 out of 67,044
    • In immunology: 682 out of 1,706
  • Year to date:
    • Site-wide: 12,884 out of 67,044
  • Since beginning of last month:
    • Site-wide: 4,164 out of 67,044

MAUDE: Inferring expression changes in sorting-based CRISPR screens

bioinformatics more details view paper
  • Downloaded 309 times
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    • Site-wide: 35,085 out of 67,044
    • In bioinformatics: 4,367 out of 6,614
  • Year to date:
    • Site-wide: 13,903 out of 67,044
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    • Site-wide: 1,511 out of 67,044

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