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Author: Aviv Regev

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  • All-time downloads: 256,206 (rank: 59 out of 425,937)
  • Categories:
    • bioengineering: 9,197 (rank: 56 (tie) out of 13,236)
    • bioinformatics: 30,010 (rank: 81 out of 36,202)
    • cancer biology: 14,374 (rank: 90 out of 30,395)
    • cell biology: 16,488 (rank: 16 out of 32,905)
    • developmental biology: 6,183 (rank: 104 out of 16,934)
    • evolutionary biology: 766 (rank: 7,432 (tie) out of 21,755)
    • genetics: 1,057 (rank: 13,442 (tie) out of 37,998)
    • genomics: 110,761 (rank: 18 out of 44,606)
    • immunology: 9,904 (rank: 384 out of 26,443)
    • molecular biology: 25,572 (rank: 15 out of 23,399)
    • neuroscience: 27,715 (rank: 128 out of 72,161)
    • systems biology: 4,179 (rank: 691 out of 12,462)

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Preprints

A multimodal cell census and atlas of the mammalian primary motor cortex

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LAMP-Seq: Population-Scale COVID-19 Diagnostics Using Combinatorial Barcoding

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Systematic comparative analysis of single cell RNA-sequencing methods

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The Human Cell Atlas

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Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

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Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming.

bioinformatics more details view paper
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DNA microscopy: Optics-free spatio-genetic imaging by a stand-alone chemical reaction

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STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

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A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

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DroNc-Seq: Deciphering cell types in human archived brain tissues by massively-parallel single nucleus RNA-seq

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High-density spatial transcriptomics arrays for in situ tissue profiling

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Chromatin potential identified by shared single cell profiling of RNA and chromatin

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Expansion Sequencing: Spatially Precise In Situ Transcriptomics in Intact Biological Systems

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The enteric nervous system of the human and mouse colon at a single-cell resolution

genomics more details view paper
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Deciphering eukaryotic cis-regulatory logic with 100 million random promoters

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In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with Autism risk genes

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Genetic determinants of co-accessible chromatin regions in T cell activation across humans

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Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces

bioinformatics more details view paper
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C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

molecular biology more details view paper
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Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

genomics more details view paper
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Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

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A single cell-based atlas of human microglial states reveals associations with neurological disorders and histopathological features of the aging brain

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High-resolution interrogation of functional elements in the noncoding genome

molecular biology more details view paper
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Single-cell transcriptomics of the aged mouse brain reveals convergent, divergent and unique aging signatures

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An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

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Div-Seq: A single nucleus RNA-Seq method reveals dynamics of rare adult newborn neurons in the CNS

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Pan-cancer single cell RNA-seq uncovers recurring programs of cellular heterogeneity

cancer biology more details view paper
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Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

developmental biology more details view paper
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Composite measurements and molecular compressed sensing for highly efficient transcriptomics

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Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

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A cellular and spatial map of the choroid plexus across brain ventricles and ages

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Molecular Logic of Cellular Diversification in the Mammalian Cerebral Cortex

developmental biology more details view paper
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Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

cancer biology more details view paper
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Single-cell profiles of retinal neurons differing in resilience to injury reveal neuroprotective genes

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Skin inflammation driven by differentiation of quiescent tissue-resident ILCs into a spectrum of pathogenic effectors

immunology more details view paper
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Scalable, multimodal profiling of chromatin accessibility and protein levels in single cells

genomics more details view paper
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A transcriptomic atlas of the mouse cerebellum reveals regional specializations and novel cell types

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Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age

immunology more details view paper
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Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

neuroscience more details view paper
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T helper cells modulate intestinal stem cell renewal and differentiation

immunology more details view paper
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Landscape of X chromosome inactivation across human tissues

genomics more details view paper
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Longitudinal single cell profiling of regulatory T cells identifies IL-33 as a driver of tumor immunosuppression

cancer biology more details view paper
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Multiplexed single-cell profiling of post-perturbation transcriptional responses to define cancer vulnerabilities and therapeutic mechanism of action

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Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

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A quantitative model for characterizing the evolutionary history of mammalian gene expression

genomics more details view paper
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Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics

genomics more details view paper
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Single-nucleus and spatial transcriptomics of archival pancreatic cancer reveals multi-compartment reprogramming after neoadjuvant treatment

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Combinatorial prediction of marker panels from single-cell transcriptomic data

bioinformatics more details view paper
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Compressed sensing for imaging transcriptomics

molecular biology more details view paper
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GeNets: A unified web platform for network-based analyses of genomic data

genomics more details view paper
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scSVA: an interactive tool for big data visualization and exploration in single-cell omics

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Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq

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Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram

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Acquired FGFR and FGF alterations confer resistance to estrogen receptor (ER) targeted therapy in ER+ metastatic breast cancer

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Single-nucleus RNA-Seq reveals a new type of brown adipocyte regulating thermogenesis

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In Silico Modeling of Metabolic State in Single Th17 Cells Reveals Novel Regulators of Inflammation and Autoimmunity

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BROCKMAN: Deciphering variance in epigenomic regulators by k-mer factorization

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Opposing immune and genetic forces shape oncogenic programs in synovial sarcoma

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Genetic predisposition to myeloproliferative neoplasms implicates hematopoietic stem cell biology

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Metabolic and Epigenomic Regulation of Th17/Treg Balance by the Polyamine Pathway

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Single cell profiling of immature human postnatal thymocytes resolves the complexity of intra-thymic lineage differentiation and thymus seeding precursors.

immunology more details view paper
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Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

genomics more details view paper
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Mapping multicellular programs from single-cell profiles

systems biology more details view paper
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CELL ATLAS OF THE HUMAN FOVEA AND PERIPHERAL RETINA

neuroscience more details view paper
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Multi-modal pooled Perturb-CITE-Seq screens in patient models define novel mechanisms of cancer immune evasion

genomics more details view paper
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An endogenous glucocorticoid-cytokine signaling circuit promotes CD8+ T cell dysfunction in the tumor microenvironment

immunology more details view paper
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Shuffle-Seq: En masse combinatorial encoding for n-way genetic interaction screens

genomics more details view paper
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Conservation and divergence in modules of the transcriptional programs of the human and mouse immune systems

bioinformatics more details view paper
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Evolutionary analysis across mammals reveals distinct classes of long noncoding RNAs

evolutionary biology more details view paper
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Cell Atlas of Aqueous Humor Outflow Pathways in Eyes of Humans and Four Model Species Provides Insights into Glaucoma Pathogenesis

cell biology more details view paper
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Regulatory network controlling tumor-promoting inflammation in human cancers

cancer biology more details view paper
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SM-Omics: An automated platform for high-throughput spatial multi-omics

genomics more details view paper
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Cycling cancer persister cells arise from lineages with distinct transcriptional and metabolic programs

cancer biology more details view paper
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MAUDE: Inferring expression changes in sorting-based CRISPR screens

bioinformatics more details view paper
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Transcriptional mediators of treatment resistance in lethal prostate cancer

genomics more details view paper
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RAAS blockade, kidney disease, and expression of ACE2, the entry receptor for SARS-CoV-2, in kidney epithelial and endothelial cells

genomics more details view paper
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L1CAM is not Associated with Extracellular Vesicles in Human Cerebrospinal Fluid or Plasma

neuroscience more details view paper
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Dietary suppression of MHC-II expression in intestinal stem cells enhances intestinal tumorigenesis

cancer biology more details view paper
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Single-cell multimodal profiling of proteins and chromatin accessibility using PHAGE-ATAC

genomics more details view paper
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