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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,482 bioRxiv papers from 277,419 authors.

Author: Ming Hu

Rankings

  • All-time downloads: 22,306 (rank: 969 out of 277,419)
  • Categories:
    • bioinformatics: 6,180 (rank: 733 out of 24,391)
    • genetics: 9,366 (rank: 956 out of 27,685)
    • genomics: 4,779 (rank: 2,625 out of 31,917)
    • neuroscience: 1,608 (rank: 5,660 (tie) out of 45,818)
    • systems biology: 373 (rank: 4,795 (tie) out of 8,416)

Downloads per author, site-wide

Preprints

Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression

genetics more details view paper
  • Downloaded 8,726 times
  • Download rankings, all-time:
    • Site-wide: 137 out of 62,482
    • In genetics: 13 out of 3,548
  • Year to date:
    • Site-wide: 2,274 out of 62,482
  • Since beginning of last month:
    • Site-wide: 8,448 out of 62,482

The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions

bioinformatics more details view paper
  • Downloaded 2,587 times
  • Download rankings, all-time:
    • Site-wide: 1,398 out of 62,482
    • In bioinformatics: 276 out of 6,231
  • Year to date:
    • Site-wide: 20,401 out of 62,482
  • Since beginning of last month:
    • Site-wide: 30,851 out of 62,482

Histone H3 Lysine 4 methyltransferases MLL3 and MLL4 Modulate Long-range Chromatin Interactions at Enhancers

genomics more details view paper
  • Downloaded 2,226 times
  • Download rankings, all-time:
    • Site-wide: 1,832 out of 62,482
    • In genomics: 409 out of 4,297
  • Year to date:
    • Site-wide: 26,726 out of 62,482
  • Since beginning of last month:
    • Site-wide: 31,398 out of 62,482

HiCPlus: Resolution Enhancement of Hi-C interaction heatmap

bioinformatics more details view paper
  • Downloaded 1,984 times
  • Download rankings, all-time:
    • Site-wide: 2,270 out of 62,482
    • In bioinformatics: 466 out of 6,231
  • Year to date:
    • Site-wide: 26,347 out of 62,482
  • Since beginning of last month:
    • Site-wide: 33,368 out of 62,482

Common DNA sequence variation influences 3-dimensional conformation of the human genome

genomics more details view paper
  • Downloaded 1,190 times
  • Download rankings, all-time:
    • Site-wide: 5,290 out of 62,482
    • In genomics: 904 out of 4,297
  • Year to date:
    • Site-wide: 1,093 out of 62,482
  • Since beginning of last month:
    • Site-wide: 8,421 out of 62,482

Reliable sensory processing in mouse visual cortex through inhibitory interactions between Somatostatin and Parvalbumin interneurons

neuroscience more details view paper
  • Downloaded 970 times
  • Download rankings, all-time:
    • Site-wide: 7,392 out of 62,482
    • In neuroscience: 1,143 out of 11,150
  • Year to date:
    • Site-wide: 24,690 out of 62,482
  • Since beginning of last month:
    • Site-wide: 29,808 out of 62,482

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

bioinformatics more details view paper
  • Downloaded 928 times
  • Download rankings, all-time:
    • Site-wide: 7,949 out of 62,482
    • In bioinformatics: 1,408 out of 6,231
  • Year to date:
    • Site-wide: 7,044 out of 62,482
  • Since beginning of last month:
    • Site-wide: 14,113 out of 62,482

Removing unwanted variation between samples in Hi-C experiments

genomics more details view paper
  • Downloaded 809 times
  • Download rankings, all-time:
    • Site-wide: 9,861 out of 62,482
    • In genomics: 1,456 out of 4,297
  • Year to date:
    • Site-wide: 20,470 out of 62,482
  • Since beginning of last month:
    • Site-wide: 28,196 out of 62,482

HUGIn: Hi-C Unifying Genomic Interrogator

genetics more details view paper
  • Downloaded 640 times
  • Download rankings, all-time:
    • Site-wide: 13,775 out of 62,482
    • In genetics: 960 out of 3,548
  • Year to date:
    • Site-wide: 54,669 out of 62,482
  • Since beginning of last month:
    • Site-wide: 57,033 out of 62,482

BAMM-SC: A Bayesian mixture model for clustering droplet-based single cell transcriptomic data from population studies

bioinformatics more details view paper
  • Downloaded 482 times
  • Download rankings, all-time:
    • Site-wide: 19,980 out of 62,482
    • In bioinformatics: 2,944 out of 6,231
  • Year to date:
    • Site-wide: 13,352 out of 62,482
  • Since beginning of last month:
    • Site-wide: 24,608 out of 62,482

Robust Hi-C chromatin loop maps in human neurogenesis and brain tissues at high-resolution

genomics more details view paper
  • Downloaded 385 times
  • Download rankings, all-time:
    • Site-wide: 25,753 out of 62,482
    • In genomics: 2,697 out of 4,297
  • Year to date:
    • Site-wide: 7,471 out of 62,482
  • Since beginning of last month:
    • Site-wide: 2,719 out of 62,482

Integrative analyses of multi-tissue Hi-C and eQTL data demonstrate close spatial proximity between eQTLs and their target genes

systems biology more details view paper
  • Downloaded 373 times
  • Download rankings, all-time:
    • Site-wide: 26,599 out of 62,482
    • In systems biology: 809 out of 1,774
  • Year to date:
    • Site-wide: 30,723 out of 62,482
  • Since beginning of last month:
    • Site-wide: 40,645 out of 62,482

The structure of the population code in neural ensembles of V4 shapes pair-wise interactions on different time scales.

neuroscience more details view paper
  • Downloaded 291 times
  • Download rankings, all-time:
    • Site-wide: 33,675 out of 62,482
    • In neuroscience: 5,812 out of 11,150
  • Year to date:
    • Site-wide: 11,793 out of 62,482
  • Since beginning of last month:
    • Site-wide: 11,313 out of 62,482

Reading-out task variables as a low-dimensional reconstruction of neural spike trains in single trials.

neuroscience more details view paper
  • Downloaded 202 times
  • Download rankings, all-time:
    • Site-wide: 43,553 out of 62,482
    • In neuroscience: 7,644 out of 11,150
  • Year to date:
    • Site-wide: 19,483 out of 62,482
  • Since beginning of last month:
    • Site-wide: 8,708 out of 62,482

FIREcaller: an R package for detecting frequently interacting regions from Hi-C data

bioinformatics more details view paper
  • Downloaded 199 times
  • Download rankings, all-time:
    • Site-wide: 43,984 out of 62,482
    • In bioinformatics: 5,030 out of 6,231
  • Year to date:
    • Site-wide: 19,951 out of 62,482
  • Since beginning of last month:
    • Site-wide: 30,108 out of 62,482

TWO-SIGMA: a novel TWO-component SInGle cell Model-based Association method for single-cell RNA-seq data

genomics more details view paper
  • Downloaded 169 times
  • Download rankings, all-time:
    • Site-wide: 47,882 out of 62,482
    • In genomics: 3,795 out of 4,297
  • Year to date:
    • Site-wide: 24,169 out of 62,482
  • Since beginning of last month:
    • Site-wide: 6,741 out of 62,482

Label-free characterization of visual cortical areas in awake mice via three-photon microscopy reveals correlations between functional maps and structural substrates

neuroscience more details view paper
  • Downloaded 145 times
  • Download rankings, all-time:
    • Site-wide: 51,202 out of 62,482
    • In neuroscience: 9,064 out of 11,150
  • Year to date:
    • Site-wide: 28,640 out of 62,482
  • Since beginning of last month:
    • Site-wide: 1,694 out of 62,482

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