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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,933 bioRxiv papers from 279,142 authors.

Author: Chris Sander

  • ORCiD: http://orcid.org/0000-0001-6059-6270
  • Most recently observed institution: cBio Center, Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA, 02215, USA; Department of Cell Biology, Harvard Medical School, Boston, MA, 02215, USA

Rankings

  • All-time downloads: 33,282 (rank: 499 out of 279,142)
  • Categories:
    • bioinformatics: 10,320 (rank: 283 out of 24,417)
    • cancer biology: 8,917 (rank: 98 out of 17,292)
    • evolutionary biology: 929 (rank: 3,376 (tie) out of 15,252)
    • genomics: 5,828 (rank: 1,970 (tie) out of 31,956)
    • systems biology: 7,288 (rank: 29 out of 8,483)

Downloads per author, site-wide

Preprints

Comparing cancer cell lines and tumor samples by genomic profiles

cancer biology more details view paper
  • Downloaded 5,436 times
  • Download rankings, all-time:
    • Site-wide: 350 out of 62,933
    • In cancer biology: 10 out of 2,061
  • Year to date:
    • Site-wide: 2,136 out of 62,933
  • Since beginning of last month:
    • Site-wide: 4,685 out of 62,933

Mitochondrial DNA Copy Number Variation Across Human Cancers

genomics more details view paper
  • Downloaded 4,307 times
  • Download rankings, all-time:
    • Site-wide: 538 out of 62,933
    • In genomics: 142 out of 4,316
  • Year to date:
    • Site-wide: 2,449 out of 62,933
  • Since beginning of last month:
    • Site-wide: 5,347 out of 62,933

EVfold.org: Evolutionary Couplings and Protein 3D Structure Prediction

bioinformatics more details view paper
  • Downloaded 2,968 times
  • Download rankings, all-time:
    • Site-wide: 1,102 out of 62,933
    • In bioinformatics: 225 out of 6,251
  • Year to date:
    • Site-wide: 4,685 out of 62,933
  • Since beginning of last month:
    • Site-wide: 4,517 out of 62,933

Sequence co-evolution gives 3D contacts and structures of protein complexes

bioinformatics more details view paper
  • Downloaded 2,110 times
  • Download rankings, all-time:
    • Site-wide: 2,030 out of 62,933
    • In bioinformatics: 419 out of 6,251
  • Year to date:
    • Site-wide: 50,272 out of 62,933
  • Since beginning of last month:
    • Site-wide: 57,007 out of 62,933

MatchMiner: An open source computational platform for real-time matching of cancer patients to precision medicine clinical trials using genomic and clinical criteria

bioinformatics more details view paper
  • Downloaded 1,771 times
  • Download rankings, all-time:
    • Site-wide: 2,753 out of 62,933
    • In bioinformatics: 560 out of 6,251
  • Year to date:
    • Site-wide: 6,528 out of 62,933
  • Since beginning of last month:
    • Site-wide: 13,908 out of 62,933

Protein Domain Hotspots Reveal Functional Mutations across Genes in Cancer

genomics more details view paper
  • Downloaded 1,521 times
  • Download rankings, all-time:
    • Site-wide: 3,555 out of 62,933
    • In genomics: 670 out of 4,316
  • Year to date:
    • Site-wide: 30,792 out of 62,933
  • Since beginning of last month:
    • Site-wide: 27,924 out of 62,933

Rapid proteotyping reveals cancer biology and drug response determinants in the NCI-60 cells

systems biology more details view paper
  • Downloaded 1,327 times
  • Download rankings, all-time:
    • Site-wide: 4,446 out of 62,933
    • In systems biology: 111 out of 1,783
  • Year to date:
    • Site-wide: 3,387 out of 62,933
  • Since beginning of last month:
    • Site-wide: 9,005 out of 62,933

Perturbation biology models predict c-Myc as an effective co-target in RAF inhibitor resistant melanoma cells

cancer biology more details view paper
  • Downloaded 1,265 times
  • Download rankings, all-time:
    • Site-wide: 4,803 out of 62,933
    • In cancer biology: 124 out of 2,061
  • Year to date:
    • Site-wide: 50,106 out of 62,933
  • Since beginning of last month:
    • Site-wide: 56,951 out of 62,933

Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations

cancer biology more details view paper
  • Downloaded 1,262 times
  • Download rankings, all-time:
    • Site-wide: 4,828 out of 62,933
    • In cancer biology: 126 out of 2,061
  • Year to date:
    • Site-wide: 49,444 out of 62,933
  • Since beginning of last month:
    • Site-wide: 47,012 out of 62,933

3D protein structure from genetic epistasis experiments

systems biology more details view paper
  • Downloaded 1,236 times
  • Download rankings, all-time:
    • Site-wide: 4,994 out of 62,933
    • In systems biology: 131 out of 1,783
  • Year to date:
    • Site-wide: 4,343 out of 62,933
  • Since beginning of last month:
    • Site-wide: 11,141 out of 62,933

Extensive Decoupling of Metabolic Genes in Cancer

systems biology more details view paper
  • Downloaded 1,186 times
  • Download rankings, all-time:
    • Site-wide: 5,332 out of 62,933
    • In systems biology: 141 out of 1,783
  • Year to date:
    • Site-wide: 20,705 out of 62,933
  • Since beginning of last month:
    • Site-wide: 15,604 out of 62,933

Causal interactions from proteomic profiles: molecular data meets pathway knowledge

systems biology more details view paper
  • Downloaded 1,054 times
  • Download rankings, all-time:
    • Site-wide: 6,519 out of 62,933
    • In systems biology: 182 out of 1,783
  • Year to date:
    • Site-wide: 11,025 out of 62,933
  • Since beginning of last month:
    • Site-wide: 10,082 out of 62,933

Cancer-associated recurrent mutations in RNase III domains of DICER1

cancer biology more details view paper
  • Downloaded 954 times
  • Download rankings, all-time:
    • Site-wide: 7,627 out of 62,933
    • In cancer biology: 200 out of 2,061
  • Year to date:
    • Site-wide: 36,890 out of 62,933
  • Since beginning of last month:
    • Site-wide: 44,591 out of 62,933

Protein structure from experimental evolution

evolutionary biology more details view paper
  • Downloaded 929 times
  • Download rankings, all-time:
    • Site-wide: 7,993 out of 62,933
    • In evolutionary biology: 514 out of 4,228
  • Year to date:
    • Site-wide: 1,677 out of 62,933
  • Since beginning of last month:
    • Site-wide: 2,543 out of 62,933

Accelerating Protein Design Using Autoregressive Generative Models

systems biology more details view paper
  • Downloaded 805 times
  • Download rankings, all-time:
    • Site-wide: 9,967 out of 62,933
    • In systems biology: 283 out of 1,783
  • Year to date:
    • Site-wide: 2,150 out of 62,933
  • Since beginning of last month:
    • Site-wide: 80 out of 62,933

Integrative analysis of pharmacogenomics in major cancer cell line databases using CellMinerCDB

bioinformatics more details view paper
  • Downloaded 792 times
  • Download rankings, all-time:
    • Site-wide: 10,225 out of 62,933
    • In bioinformatics: 1,761 out of 6,251
  • Year to date:
    • Site-wide: 10,143 out of 62,933
  • Since beginning of last month:
    • Site-wide: 13,459 out of 62,933

Protein Profiling In Cancer Cell Lines And Tumor Tissue Using Reverse Phase Protein Arrays

systems biology more details view paper
  • Downloaded 773 times
  • Download rankings, all-time:
    • Site-wide: 10,544 out of 62,933
    • In systems biology: 298 out of 1,783
  • Year to date:
    • Site-wide: 21,303 out of 62,933
  • Since beginning of last month:
    • Site-wide: 14,059 out of 62,933

Accurate prediction of transmembrane β-barrel proteins from sequences

bioinformatics more details view paper
  • Downloaded 710 times
  • Download rankings, all-time:
    • Site-wide: 11,936 out of 62,933
    • In bioinformatics: 1,985 out of 6,251
  • Year to date:
    • Site-wide: 55,143 out of 62,933
  • Since beginning of last month:
    • Site-wide: 49,161 out of 62,933

The EVcouplings Python framework for coevolutionary sequence analysis

bioinformatics more details view paper
  • Downloaded 591 times
  • Download rankings, all-time:
    • Site-wide: 15,468 out of 62,933
    • In bioinformatics: 2,429 out of 6,251
  • Year to date:
    • Site-wide: 19,710 out of 62,933
  • Since beginning of last month:
    • Site-wide: 21,966 out of 62,933

Perturbation biology links temporal protein changes to drug responses in a melanoma cell line

systems biology more details view paper
  • Downloaded 547 times
  • Download rankings, all-time:
    • Site-wide: 17,157 out of 62,933
    • In systems biology: 527 out of 1,783
  • Year to date:
    • Site-wide: 4,230 out of 62,933
  • Since beginning of last month:
    • Site-wide: 4,623 out of 62,933

PaxtoolsR: Pathway Analysis in R Using Pathway Commons

bioinformatics more details view paper
  • Downloaded 546 times
  • Download rankings, all-time:
    • Site-wide: 17,209 out of 62,933
    • In bioinformatics: 2,619 out of 6,251
  • Year to date:
    • Site-wide: 58,455 out of 62,933
  • Since beginning of last month:
    • Site-wide: 60,009 out of 62,933

AlignmentViewer: Sequence Analysis of Large Protein Families

bioinformatics more details view paper
  • Downloaded 375 times
  • Download rankings, all-time:
    • Site-wide: 26,584 out of 62,933
    • In bioinformatics: 3,622 out of 6,251
  • Year to date:
    • Site-wide: 32,764 out of 62,933
  • Since beginning of last month:
    • Site-wide: 52,655 out of 62,933

3D RNA from evolutionary couplings

bioinformatics more details view paper
  • Downloaded 371 times
  • Download rankings, all-time:
    • Site-wide: 26,913 out of 62,933
    • In bioinformatics: 3,648 out of 6,251
  • Year to date:
    • Site-wide: 56,522 out of 62,933
  • Since beginning of last month:
    • Site-wide: 41,928 out of 62,933

Interpretable Machine Learning for Perturbation Biology

systems biology more details view paper
  • Downloaded 360 times
  • Download rankings, all-time:
    • Site-wide: 27,685 out of 62,933
    • In systems biology: 851 out of 1,783
  • Year to date:
    • Site-wide: 8,455 out of 62,933
  • Since beginning of last month:
    • Site-wide: 936 out of 62,933

Pathway Commons: 2019 Update

bioinformatics more details view paper
  • Downloaded 86 times
  • Download rankings, all-time:
    • Site-wide: 58,360 out of 62,933
    • In bioinformatics: 5,991 out of 6,251
  • Year to date:
    • Site-wide: 44,937 out of 62,933
  • Since beginning of last month:
    • Site-wide: 4,307 out of 62,933

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