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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,230 bioRxiv papers from 306,634 authors.

Author: Liam Paninski

  • Most recently observed institution: Columbia University

Rankings

  • All-time downloads: 38,345 (rank: 439 out of 306,655)
  • Categories:
    • bioinformatics: 2,683 (rank: 2,886 out of 26,739)
    • neuroscience: 35,662 (rank: 26 out of 51,768)

Downloads per author, site-wide

Preprints

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

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  • Downloaded 9,986 times
  • Download rankings, all-time:
    • Site-wide: 127 out of 70,235
    • In neuroscience: 21 out of 12,633
  • Year to date:
    • Site-wide: 520 out of 70,235
  • Since beginning of last month:
    • Site-wide: 1,259 out of 70,235

Hierarchical recurrent state space models reveal discrete and continuous dynamics of neural activity in C. elegans

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  • Downloaded 3,149 times
  • Download rankings, all-time:
    • Site-wide: 1,139 out of 70,235
    • In neuroscience: 166 out of 12,633
  • Year to date:
    • Site-wide: 1,195 out of 70,235
  • Since beginning of last month:
    • Site-wide: 865 out of 70,235

NeuroPAL: A Neuronal Polychromatic Atlas of Landmarks for Whole-Brain Imaging in C. elegans

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  • Downloaded 2,907 times
  • Download rankings, all-time:
    • Site-wide: 1,319 out of 70,235
    • In neuroscience: 195 out of 12,633
  • Year to date:
    • Site-wide: 336 out of 70,235
  • Since beginning of last month:
    • Site-wide: 1,007 out of 70,235

Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons

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  • Downloaded 2,807 times
  • Download rankings, all-time:
    • Site-wide: 1,399 out of 70,235
    • In neuroscience: 204 out of 12,633
  • Year to date:
    • Site-wide: 4,273 out of 70,235
  • Since beginning of last month:
    • Site-wide: 11,354 out of 70,235

Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

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  • Downloaded 2,495 times
  • Download rankings, all-time:
    • Site-wide: 1,723 out of 70,235
    • In neuroscience: 251 out of 12,633
  • Year to date:
    • Site-wide: 4,812 out of 70,235
  • Since beginning of last month:
    • Site-wide: 3,130 out of 70,235

YASS: Yet Another Spike Sorter

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  • Downloaded 2,467 times
  • Download rankings, all-time:
    • Site-wide: 1,765 out of 70,235
    • In neuroscience: 255 out of 12,633
  • Year to date:
    • Site-wide: 5,881 out of 70,235
  • Since beginning of last month:
    • Site-wide: 26,074 out of 70,235

OnACID: Online Analysis of Calcium Imaging Data in Real Time

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  • Downloaded 2,176 times
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    • Site-wide: 2,205 out of 70,235
    • In neuroscience: 330 out of 12,633
  • Year to date:
    • Site-wide: 30,472 out of 70,235
  • Since beginning of last month:
    • Site-wide: 27,733 out of 70,235

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data

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  • Downloaded 1,573 times
  • Download rankings, all-time:
    • Site-wide: 3,845 out of 70,235
    • In neuroscience: 605 out of 12,633
  • Year to date:
    • Site-wide: 27,911 out of 70,235
  • Since beginning of last month:
    • Site-wide: 18,708 out of 70,235

Complementary networks of cortical somatostatin interneurons enforce layer specific control

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  • Downloaded 1,547 times
  • Download rankings, all-time:
    • Site-wide: 3,947 out of 70,235
    • In neuroscience: 618 out of 12,633
  • Year to date:
    • Site-wide: 64,960 out of 70,235
  • Since beginning of last month:
    • Site-wide: 28,455 out of 70,235

The central amygdala controls learning in the lateral amygdala

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  • Downloaded 1,544 times
  • Download rankings, all-time:
    • Site-wide: 3,959 out of 70,235
    • In neuroscience: 622 out of 12,633
  • Year to date:
    • Site-wide: 22,782 out of 70,235
  • Since beginning of last month:
    • Site-wide: 47,332 out of 70,235

Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

neuroscience more details view paper
  • Downloaded 1,469 times
  • Download rankings, all-time:
    • Site-wide: 4,321 out of 70,235
    • In neuroscience: 675 out of 12,633
  • Year to date:
    • Site-wide: 55,364 out of 70,235
  • Since beginning of last month:
    • Site-wide: 2,115 out of 70,235

Electrical Stimulus Artifact Cancellation and Neural Spike Detection on Large Multi-Electrode Arrays

neuroscience more details view paper
  • Downloaded 1,262 times
  • Download rankings, all-time:
    • Site-wide: 5,552 out of 70,235
    • In neuroscience: 870 out of 12,633
  • Year to date:
    • Site-wide: 20,084 out of 70,235
  • Since beginning of last month:
    • Site-wide: 38,153 out of 70,235

Multi-scale approaches for high-speed imaging and analysis of large neural populations

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  • Downloaded 1,122 times
  • Download rankings, all-time:
    • Site-wide: 6,794 out of 70,235
    • In neuroscience: 1,083 out of 12,633
  • Year to date:
    • Site-wide: 49,224 out of 70,235
  • Since beginning of last month:
    • Site-wide: 65,287 out of 70,235

The Markov link method: a nonparametric approach to combine observations from multiple experiments

bioinformatics more details view paper
  • Downloaded 957 times
  • Download rankings, all-time:
    • Site-wide: 8,805 out of 70,235
    • In bioinformatics: 1,529 out of 6,887
  • Year to date:
    • Site-wide: 8,535 out of 70,235
  • Since beginning of last month:
    • Site-wide: 13,379 out of 70,235

Scalable variational inference for super resolution microscopy

bioinformatics more details view paper
  • Downloaded 897 times
  • Download rankings, all-time:
    • Site-wide: 9,725 out of 70,235
    • In bioinformatics: 1,678 out of 6,887
  • Year to date:
    • Site-wide: 26,799 out of 70,235
  • Since beginning of last month:
    • Site-wide: 66,032 out of 70,235

Scalable approximate Bayesian inference for particle tracking data

bioinformatics more details view paper
  • Downloaded 829 times
  • Download rankings, all-time:
    • Site-wide: 11,067 out of 70,235
    • In bioinformatics: 1,863 out of 6,887
  • Year to date:
    • Site-wide: 13,841 out of 70,235
  • Since beginning of last month:
    • Site-wide: 46,951 out of 70,235

A Statistical Model of Shared Variability in the Songbird Auditory System

neuroscience more details view paper
  • Downloaded 688 times
  • Download rankings, all-time:
    • Site-wide: 14,499 out of 70,235
    • In neuroscience: 2,398 out of 12,633
  • Year to date:
    • Site-wide: 42,437 out of 70,235
  • Since beginning of last month:
    • Site-wide: 53,038 out of 70,235

A zero-inflated gamma model for post-deconvolved calcium imaging traces

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  • Downloaded 470 times
  • Download rankings, all-time:
    • Site-wide: 24,156 out of 70,235
    • In neuroscience: 4,144 out of 12,633
  • Year to date:
    • Site-wide: 6,918 out of 70,235
  • Since beginning of last month:
    • Site-wide: 12,927 out of 70,235

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