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Author: Liam Paninski

  • Most recently observed institution: Columbia University

Rankings

  • All-time downloads: 41,486 (rank: 597 out of 334,390)
  • Categories:
    • bioinformatics: 2,804 (rank: 3,040 out of 28,790)
    • neuroscience: 38,682 (rank: 22 out of 56,522)

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Preprints

EASE: EM-Assisted Source Extraction from calcium imaging data

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YASS: Yet Another Spike Sorter applied to large-scale multi-electrode array recordings in primate retina

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Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

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    • In neuroscience: 22 out of 13,812
  • Year to date:
    • Site-wide: 1,343 out of 77,108
  • Since beginning of last month:
    • Site-wide: 1,469 out of 77,108

Hierarchical recurrent state space models reveal discrete and continuous dynamics of neural activity in C. elegans

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    • In neuroscience: 129 out of 13,812
  • Year to date:
    • Site-wide: 871 out of 77,108
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    • Site-wide: 842 out of 77,108

NeuroPAL: A Neuronal Polychromatic Atlas of Landmarks for Whole-Brain Imaging in C. elegans

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    • In neuroscience: 167 out of 13,812
  • Year to date:
    • Site-wide: 886 out of 77,108
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    • Site-wide: 1,033 out of 77,108

Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons

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    • In neuroscience: 211 out of 13,812
  • Year to date:
    • Site-wide: 9,794 out of 77,108
  • Since beginning of last month:
    • Site-wide: 9,927 out of 77,108

Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

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  • Downloaded 2,665 times
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    • In neuroscience: 251 out of 13,812
  • Year to date:
    • Site-wide: 4,779 out of 77,108
  • Since beginning of last month:
    • Site-wide: 5,520 out of 77,108

YASS: Yet Another Spike Sorter

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  • Downloaded 2,548 times
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    • In neuroscience: 273 out of 13,812
  • Year to date:
    • Site-wide: 13,068 out of 77,108
  • Since beginning of last month:
    • Site-wide: 10,887 out of 77,108

OnACID: Online Analysis of Calcium Imaging Data in Real Time

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  • Downloaded 2,238 times
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    • In neuroscience: 356 out of 13,812
  • Year to date:
    • Site-wide: 21,068 out of 77,108
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    • Site-wide: 21,896 out of 77,108

Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

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    • In neuroscience: 527 out of 13,812
  • Year to date:
    • Site-wide: 1,824 out of 77,108
  • Since beginning of last month:
    • Site-wide: 1,876 out of 77,108

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data

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    • Site-wide: 4,130 out of 77,108
    • In neuroscience: 640 out of 13,812
  • Year to date:
    • Site-wide: 23,453 out of 77,108
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    • Site-wide: 16,321 out of 77,108

Complementary networks of cortical somatostatin interneurons enforce layer specific control

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    • Site-wide: 4,326 out of 77,108
    • In neuroscience: 674 out of 13,812
  • Year to date:
    • Site-wide: 38,907 out of 77,108
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    • Site-wide: 43,378 out of 77,108

The central amygdala controls learning in the lateral amygdala

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    • Site-wide: 4,377 out of 77,108
    • In neuroscience: 686 out of 13,812
  • Year to date:
    • Site-wide: 39,170 out of 77,108
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    • Site-wide: 39,635 out of 77,108

Electrical Stimulus Artifact Cancellation and Neural Spike Detection on Large Multi-Electrode Arrays

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  • Downloaded 1,295 times
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    • Site-wide: 6,059 out of 77,108
    • In neuroscience: 946 out of 13,812
  • Year to date:
    • Site-wide: 36,301 out of 77,108
  • Since beginning of last month:
    • Site-wide: 33,096 out of 77,108

Multi-scale approaches for high-speed imaging and analysis of large neural populations

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  • Downloaded 1,143 times
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    • Site-wide: 7,473 out of 77,108
    • In neuroscience: 1,185 out of 13,812
  • Year to date:
    • Site-wide: 61,780 out of 77,108
  • Since beginning of last month:
    • Site-wide: 61,229 out of 77,108

The Markov link method: a nonparametric approach to combine observations from multiple experiments

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  • Downloaded 1,007 times
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    • Site-wide: 9,231 out of 77,108
    • In bioinformatics: 1,581 out of 7,442
  • Year to date:
    • Site-wide: 22,606 out of 77,108
  • Since beginning of last month:
    • Site-wide: 22,673 out of 77,108

Scalable variational inference for super resolution microscopy

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  • Downloaded 926 times
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    • Site-wide: 10,555 out of 77,108
    • In bioinformatics: 1,778 out of 7,442
  • Year to date:
    • Site-wide: 43,327 out of 77,108
  • Since beginning of last month:
    • Site-wide: 37,213 out of 77,108

Scalable approximate Bayesian inference for particle tracking data

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  • Downloaded 871 times
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    • Site-wide: 11,674 out of 77,108
    • In bioinformatics: 1,928 out of 7,442
  • Year to date:
    • Site-wide: 28,197 out of 77,108
  • Since beginning of last month:
    • Site-wide: 24,627 out of 77,108

High fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo

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  • Downloaded 783 times
  • Download rankings, all-time:
    • Site-wide: 13,667 out of 77,108
    • In neuroscience: 2,256 out of 13,812
  • Year to date:
    • Site-wide: 461 out of 77,108
  • Since beginning of last month:
    • Site-wide: 734 out of 77,108

A Statistical Model of Shared Variability in the Songbird Auditory System

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  • Downloaded 708 times
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    • Site-wide: 15,899 out of 77,108
    • In neuroscience: 2,672 out of 13,812
  • Year to date:
    • Site-wide: 62,118 out of 77,108
  • Since beginning of last month:
    • Site-wide: 58,382 out of 77,108

A zero-inflated gamma model for post-deconvolved calcium imaging traces

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  • Downloaded 549 times
  • Download rankings, all-time:
    • Site-wide: 22,786 out of 77,108
    • In neuroscience: 3,876 out of 13,812
  • Year to date:
    • Site-wide: 13,676 out of 77,108
  • Since beginning of last month:
    • Site-wide: 12,223 out of 77,108

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