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Author: Aristotelis Tsirigos

Rankings

  • All-time downloads: 26,539 (rank: 1,561 out of 360,728)
  • Categories:
    • bioinformatics: 9,623 (rank: 562 out of 31,200)
    • cancer biology: 10,340 (rank: 119 out of 24,467)
    • developmental biology: 525 (rank: 5,340 (tie) out of 14,015)
    • genomics: 2,537 (rank: 7,077 out of 39,037)
    • molecular biology: 1,543 (rank: 1,807 (tie) out of 18,278)
    • neuroscience: 591 (rank: 25,228 (tie) out of 60,593)
    • pathology: 1,380 (rank: 294 (tie) out of 3,636)

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Preprints

A bipartite element with allele-specific functions safeguards DNA methylation imprints at the Dlk1-Dio3 locus

developmental biology more details view paper

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Classification and Mutation Prediction from Non-Small Cell Lung Cancer Histopathology Images using Deep Learning

cancer biology more details view paper
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    • In cancer biology: 7 out of 2,922
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    • Site-wide: 676 out of 83,758
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    • Site-wide: 899 out of 83,758

HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking

bioinformatics more details view paper
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    • In bioinformatics: 181 out of 8,035
  • Year to date:
    • Site-wide: 42,151 out of 83,758
  • Since beginning of last month:
    • Site-wide: 38,700 out of 83,758

lncRNA-screen: an interactive platform for computationally screening long non-coding RNAs in large genomics datasets

bioinformatics more details view paper
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    • In bioinformatics: 292 out of 8,035
  • Year to date:
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    • Site-wide: 14,122 out of 83,758

KLF4 binding is involved in the organization and regulation of 3D enhancer networks during acquisition and maintenance of pluripotency

molecular biology more details view paper
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    • In molecular biology: 169 out of 2,810
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    • Site-wide: 13,922 out of 83,758
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    • Site-wide: 15,800 out of 83,758

Dynamic 3D chromosomal landscapes in acute leukemia

cancer biology more details view paper
  • Downloaded 1,521 times
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    • In cancer biology: 132 out of 2,922
  • Year to date:
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    • Site-wide: 6,572 out of 83,758

Stratification of TAD boundaries identified in reproducible Hi-C contact matrices reveals preferential insulation of super-enhancers by strong boundaries

bioinformatics more details view paper
  • Downloaded 1,372 times
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    • In bioinformatics: 1,139 out of 8,035
  • Year to date:
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    • Site-wide: 29,982 out of 83,758

NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains

genomics more details view paper
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    • In genomics: 1,515 out of 5,409
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    • Site-wide: 28,158 out of 83,758
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    • Site-wide: 29,020 out of 83,758

ChIPSeqSpike: A R/Bioconductor package for ChIP-Seq data scaling according to spike-in control

bioinformatics more details view paper
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    • Site-wide: 13,018 out of 83,758
    • In bioinformatics: 2,089 out of 8,035
  • Year to date:
    • Site-wide: 38,968 out of 83,758
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    • Site-wide: 29,974 out of 83,758

Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation

genomics more details view paper
  • Downloaded 847 times
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    • Site-wide: 13,734 out of 83,758
    • In genomics: 1,826 out of 5,409
  • Year to date:
    • Site-wide: 2,691 out of 83,758
  • Since beginning of last month:
    • Site-wide: 2,544 out of 83,758

Efficient pan-cancer whole-slide image classification and outlier detection using convolutional neural networks

pathology more details view paper
  • Downloaded 841 times
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    • Site-wide: 13,903 out of 83,758
    • In pathology: 44 out of 471
  • Year to date:
    • Site-wide: 10,340 out of 83,758
  • Since beginning of last month:
    • Site-wide: 6,264 out of 83,758

N-BLR, a primate-specific non-coding transcript, modulates the epithelial-to-mesenchymal transition and leads to colorectal cancer invasion and migration

genomics more details view paper
  • Downloaded 682 times
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    • Site-wide: 19,076 out of 83,758
    • In genomics: 2,277 out of 5,409
  • Year to date:
    • Site-wide: 81,270 out of 83,758
  • Since beginning of last month:
    • Site-wide: 79,363 out of 83,758

The translatome of adult cortical axons is regulated by learning in vivo

neuroscience more details view paper
  • Downloaded 591 times
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    • Site-wide: 23,412 out of 83,758
    • In neuroscience: 3,935 out of 14,933
  • Year to date:
    • Site-wide: 42,162 out of 83,758
  • Since beginning of last month:
    • Site-wide: 34,243 out of 83,758

A Deep Learning Approach for Rapid Mutational Screening in Melanoma

pathology more details view paper
  • Downloaded 539 times
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    • Site-wide: 26,454 out of 83,758
    • In pathology: 88 out of 471
  • Year to date:
    • Site-wide: 21,332 out of 83,758
  • Since beginning of last month:
    • Site-wide: 18,000 out of 83,758

Context-dependent requirement of H3K9 methyltransferase activity during cellular reprogramming to iPSCs

developmental biology more details view paper
  • Downloaded 525 times
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    • Site-wide: 27,350 out of 83,758
    • In developmental biology: 732 out of 2,497
  • Year to date:
    • Site-wide: 21,139 out of 83,758
  • Since beginning of last month:
    • Site-wide: 23,521 out of 83,758

Graph Drawing-based Dimensionality Reduction to Identify Hidden Communities in Single-Cell Sequencing Spatial Representation

bioinformatics more details view paper
  • Downloaded 164 times
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    • Site-wide: 70,827 out of 83,758
    • In bioinformatics: 7,147 out of 8,035
  • Year to date:
    • Site-wide: 14,527 out of 83,758
  • Since beginning of last month:
    • Site-wide: 3,724 out of 83,758

iCellR: Combined Coverage Correction and Principal Component Alignment for Batch Alignment in Single-Cell Sequencing Analysis

bioinformatics more details view paper
  • Downloaded 121 times
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    • Site-wide: 76,662 out of 83,758
    • In bioinformatics: 7,518 out of 8,035
  • Year to date:
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  • Since beginning of last month:
    • Site-wide: 5,680 out of 83,758

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