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Author: Ruedi Aebersold

Rankings

  • All-time downloads: 34,225 (rank: 1,451 out of 426,025)
  • Categories:
    • biochemistry: 6,693 (rank: 206 out of 20,760)
    • bioinformatics: 3,907 (rank: 2,724 out of 36,200)
    • biophysics: 1,946 (rank: 1,417 (tie) out of 18,183)
    • cancer biology: 1,133 (rank: 4,901 (tie) out of 30,395)
    • cell biology: 815 (rank: 8,241 (tie) out of 32,894)
    • evolutionary biology: 108 (rank: 20,687 (tie) out of 21,771)
    • microbiology: 497 (rank: 21,027 (tie) out of 50,802)
    • neuroscience: 412 (rank: 40,960 (tie) out of 72,365)
    • physiology: 571 (rank: 1,706 (tie) out of 9,536)
    • plant biology: 522 (rank: 6,600 (tie) out of 16,798)
    • systems biology: 17,621 (rank: 150 out of 12,462)

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Preprints

Parallel accumulation – serial fragmentation combined with data-independent acquisition (diaPASEF): Bottom-up proteomics with near optimal ion usage

systems biology more details view paper
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Automated SWATH Data Analysis Using Targeted Extraction of Ion Chromatograms

bioinformatics more details view paper
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    • In bioinformatics: 336 out of 9,260
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Genomic, Proteomic and Phenotypic Heterogeneity in HeLa Cells across Laboratories: Implications for Reproducibility of Research Results

systems biology more details view paper
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Rapid proteotyping reveals cancer biology and drug response determinants in the NCI-60 cells

systems biology more details view paper
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Insights into autophagosome biogenesis from structural and biochemical analyses of the ATG2A-WIPI4 complex

biochemistry more details view paper
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JARID2 and AEBP2 regulate PRC2 activity in the presence of H2A ubiquitination or other histone modifications

biophysics more details view paper
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Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

biochemistry more details view paper
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High-throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification

biochemistry more details view paper
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    • In biochemistry: 228 out of 3,446
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    • Site-wide: 12,584 out of 100,856
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Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

biochemistry more details view paper
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    • In biochemistry: 263 out of 3,446
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A high density map for navigating the human Polycomb complexome

systems biology more details view paper
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    • In systems biology: 296 out of 2,563
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System-wide quantitative proteomics of the metabolic syndrome in mice: genotypic and dietary effects

systems biology more details view paper
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    • In systems biology: 433 out of 2,563
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    • Site-wide: 61,083 out of 100,856
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Complex-centric proteome profiling by SEC-SWATH-MS

systems biology more details view paper
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    • In systems biology: 489 out of 2,563
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SECAT: Quantifying differential protein-protein interaction states by network-centric analysis

systems biology more details view paper
  • Downloaded 788 times
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    • Site-wide: 19,537 out of 100,856
    • In systems biology: 524 out of 2,563
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    • Site-wide: 9,882 out of 100,856
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The Molecular Landscape of the Aging Mouse Liver

systems biology more details view paper
  • Downloaded 758 times
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    • In systems biology: 558 out of 2,563
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    • Site-wide: 1,606 out of 100,856

Ultra-sensitive proteome profiling of FACS-isolated cell populations by data-independent acquisition-MS: Application to human hematopoietic stem and progenitor cells

systems biology more details view paper
  • Downloaded 722 times
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    • In systems biology: 609 out of 2,563
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DPHL: A pan-human protein mass spectrometry library for robust biomarker discovery using Data-Independent Acquisition and Parallel Reaction Monitoring

bioinformatics more details view paper
  • Downloaded 712 times
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    • In bioinformatics: 3,186 out of 9,260
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    • Site-wide: 27,935 out of 100,856

Comparative ’omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli

systems biology more details view paper
  • Downloaded 680 times
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    • In systems biology: 674 out of 2,563
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Integration of transcriptome, proteome and phosphoproteome data elucidates the genetic control of molecular networks

systems biology more details view paper
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    • In systems biology: 678 out of 2,563
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    • Site-wide: 12,486 out of 100,856

Convergent network effects along the axis of gene expression during prostate cancer progression

systems biology more details view paper
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    • In systems biology: 681 out of 2,563
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    • Site-wide: 11,373 out of 100,856

Identification of protein abundance changes in biopsy-level hepatocellular carcinoma tissues using PCT-SWATH

systems biology more details view paper
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    • In systems biology: 795 out of 2,563
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    • Site-wide: 53,489 out of 100,856

A global screen for assembly state changes of the mitotic proteome by SEC-SWATH-MS

systems biology more details view paper
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    • Site-wide: 30,126 out of 100,856
    • In systems biology: 834 out of 2,563
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    • Site-wide: 61,701 out of 100,856

PGC1a and Exercise Adaptations in Zebrafish

physiology more details view paper
  • Downloaded 571 times
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    • In physiology: 185 out of 1,437
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    • Site-wide: 18,980 out of 100,856

Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers

systems biology more details view paper
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    • In systems biology: 893 out of 2,563
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Structural and kinetic analysis of the COP9-Signalosome activation and the cullin-RING ubiquitin ligase deneddylation cycle

biochemistry more details view paper
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Mitochondrial translation and dynamics synergistically extend lifespan in C. elegans through HLH-30

cell biology more details view paper
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    • In cell biology: 1,552 out of 5,217
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Arabidopsis Proteome and the Mass Spectral Assay Library

plant biology more details view paper
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    • In plant biology: 917 out of 3,184
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    • Site-wide: 58,818 out of 100,856

Resource misallocation as a mediator of fitness costs in antibiotic resistance.

microbiology more details view paper
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    • In microbiology: 2,587 out of 8,949
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    • Site-wide: 49,084 out of 100,856

Accelerated Protein Biomarker Discovery from FFPE tissue samples using Single-shot, Short Gradient Microflow SWATH MS

cancer biology more details view paper
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MLL1 minimal catalytic complex is a dynamic conformational ensemble susceptible to pharmacological allosteric disruption

biophysics more details view paper
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    • In biophysics: 1,645 out of 4,449
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    • Site-wide: 62,520 out of 100,856

Breast cancer classification based on proteotypes obtained by SWATH mass spectrometry

cancer biology more details view paper
  • Downloaded 430 times
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    • In cancer biology: 1,387 out of 3,613
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    • Site-wide: 76,080 out of 100,856

The polyQ expansion modulates the configuration and phosphorylation of huntingtin

neuroscience more details view paper
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    • In neuroscience: 7,900 out of 17,976
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    • Site-wide: 34,115 out of 100,856

The GTPase Nog1 couples polypeptide exit tunnel quality control with ribosomal stalk assembly

biochemistry more details view paper
  • Downloaded 397 times
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    • In biochemistry: 1,417 out of 3,446
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Network analysis identifies regulators of lineage-specific phenotypes in Mycobacterium tuberculosis

systems biology more details view paper
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Systematic protein complex profiling and differential analysis from co-fractionation mass spectrometry data

systems biology more details view paper
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    • Site-wide: 16,175 out of 100,856

Two parallel pathways implement robust propionate catabolism and detoxification in mycobacteria

systems biology more details view paper
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    • Site-wide: 65,858 out of 100,856

Integrative structure investigation on the architecture of human Importin4_histone H3/H4_Asf1a complex and its histone H3 tail binding

biochemistry more details view paper
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Chemical genetics of AGC-kinases reveals shared targets of Ypk1, Protein Kinase A and Sch9

cell biology more details view paper
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    • Site-wide: 85,368 out of 100,856

Orthogonal proteomic platforms and their implications for the stable classification of high-grade serous ovarian cancer subtypes

cancer biology more details view paper
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    • In cancer biology: 2,556 out of 3,613
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    • Site-wide: 66,932 out of 100,856

Mapping specificity, entropy, allosteric changes and substrates in blood proteases by a high-throughput protease screen

biochemistry more details view paper
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    • Site-wide: 87,405 out of 100,856
    • In biochemistry: 2,899 out of 3,446
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    • Site-wide: 25,804 out of 100,856

SWATH-MS co-expression profiles reveal paralogue interference in protein complex evolution

evolutionary biology more details view paper
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    • Site-wide: 92,242 out of 100,856
    • In evolutionary biology: 5,626 out of 6,019
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    • Site-wide: 58,575 out of 100,856
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    • Site-wide: 5,690 out of 100,856

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