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Author: Fabian J. Theis

  • Most recently observed institution: Institute of Computational Biology, Helmholtz Center Munich, Germany.

Rankings

  • All-time downloads: 28,197 (rank: 1,887 out of 426,025)
  • Categories:
    • bioinformatics: 19,663 (rank: 147 out of 36,200)
    • cell biology: 287 (rank: 22,617 (tie) out of 32,894)
    • genetics: 1,082 (rank: 13,222 (tie) out of 37,998)
    • immunology: 1,433 (rank: 3,956 (tie) out of 26,443)
    • systems biology: 5,732 (rank: 495 out of 12,462)

Downloads per author, site-wide

Preprints

Generalizing RNA velocity to transient cell states through dynamical modeling

bioinformatics more details view paper
  • Downloaded 8,845 times
  • Download rankings, all-time:
    • Site-wide: 344 out of 100,856
    • In bioinformatics: 39 out of 9,260
  • Year to date:
    • Site-wide: 240 out of 100,856
  • Since beginning of last month:
    • Site-wide: 386 out of 100,856

Single cell RNA-seq denoising using a deep count autoencoder

bioinformatics more details view paper
  • Downloaded 5,865 times
  • Download rankings, all-time:
    • Site-wide: 663 out of 100,856
    • In bioinformatics: 102 out of 9,260
  • Year to date:
    • Site-wide: 11,918 out of 100,856
  • Since beginning of last month:
    • Site-wide: 24,075 out of 100,856

Diffusion pseudotime robustly reconstructs lineage branching

bioinformatics more details view paper
  • Downloaded 3,983 times
  • Download rankings, all-time:
    • Site-wide: 1,313 out of 100,856
    • In bioinformatics: 210 out of 9,260
  • Year to date:
    • Site-wide: 4,908 out of 100,856
  • Since beginning of last month:
    • Site-wide: 5,068 out of 100,856

Longitudinal single cell transcriptomics reveals Krt8+ alveolar epithelial progenitors in lung regeneration

systems biology more details view paper
  • Downloaded 3,670 times
  • Download rankings, all-time:
    • Site-wide: 1,501 out of 100,856
    • In systems biology: 34 out of 2,563
  • Year to date:
    • Site-wide: 1,305 out of 100,856
  • Since beginning of last month:
    • Site-wide: 4,408 out of 100,856

Meeting the challenges of high-dimensional data analysis in immunology

immunology more details view paper
  • Downloaded 1,433 times
  • Download rankings, all-time:
    • Site-wide: 7,363 out of 100,856
    • In immunology: 223 out of 3,141
  • Year to date:
    • Site-wide: 17,445 out of 100,856
  • Since beginning of last month:
    • Site-wide: 38,986 out of 100,856

Deep learning the collisional cross sections of the peptide universe from a million training samples

systems biology more details view paper
  • Downloaded 1,345 times
  • Download rankings, all-time:
    • Site-wide: 8,219 out of 100,856
    • In systems biology: 216 out of 2,563
  • Year to date:
    • Site-wide: 1,660 out of 100,856
  • Since beginning of last month:
    • Site-wide: 2,431 out of 100,856

Design and power analysis for multi-sample single cell genomics experiments

bioinformatics more details view paper
  • Downloaded 970 times
  • Download rankings, all-time:
    • Site-wide: 14,066 out of 100,856
    • In bioinformatics: 2,175 out of 9,260
  • Year to date:
    • Site-wide: 2,722 out of 100,856
  • Since beginning of last month:
    • Site-wide: 1,595 out of 100,856

Network-based metabolite ratios for an improved functional characterization of genome-wide association study results

genetics more details view paper
  • Downloaded 606 times
  • Download rankings, all-time:
    • Site-wide: 28,474 out of 100,856
    • In genetics: 1,699 out of 5,020
  • Year to date:
    • Site-wide: 61,902 out of 100,856
  • Since beginning of last month:
    • Site-wide: 67,410 out of 100,856

Variably methylated regions in the newborn epigenome: environmental, genetic and combined influences

genetics more details view paper
  • Downloaded 476 times
  • Download rankings, all-time:
    • Site-wide: 38,671 out of 100,856
    • In genetics: 2,222 out of 5,020
  • Year to date:
    • Site-wide: 62,328 out of 100,856
  • Since beginning of last month:
    • Site-wide: 48,918 out of 100,856

Scalable parameter estimation for genome-scale biochemical reaction networks

systems biology more details view paper
  • Downloaded 414 times
  • Download rankings, all-time:
    • Site-wide: 45,355 out of 100,856
    • In systems biology: 1,301 out of 2,563
  • Year to date:
    • Site-wide: 96,857 out of 100,856
  • Since beginning of last month:
    • Site-wide: 96,286 out of 100,856

Model-based analysis of response and resistance factors of cetuximab treatment in gastric cancer cell lines

systems biology more details view paper
  • Downloaded 303 times
  • Download rankings, all-time:
    • Site-wide: 60,672 out of 100,856
    • In systems biology: 1,734 out of 2,563
  • Year to date:
    • Site-wide: 77,190 out of 100,856
  • Since beginning of last month:
    • Site-wide: 95,479 out of 100,856

In vivo identification of apoptotic and extracellular vesicle-bound live cells using image-based deep learning

cell biology more details view paper
  • Downloaded 287 times
  • Download rankings, all-time:
    • Site-wide: 63,108 out of 100,856
    • In cell biology: 3,265 out of 5,217
  • Year to date:
    • Site-wide: 17,629 out of 100,856
  • Since beginning of last month:
    • Site-wide: 36,379 out of 100,856

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