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Author: Ying Zhang

Rankings

  • All-time downloads: 57,953 (rank: 709 out of 427,818)
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    • biochemistry: 11,760 (rank: 127 out of 20,790)
    • bioinformatics: 1,665 (rank: 7,438 (tie) out of 36,255)
    • biophysics: 1,401 (rank: 2,419 out of 18,229)
    • cancer biology: 1,043 (rank: 5,572 (tie) out of 30,505)
    • cell biology: 1,533 (rank: 3,379 out of 33,008)
    • developmental biology: 552 (rank: 6,612 (tie) out of 17,014)
    • ecology: 29 (rank: 18,690 (tie) out of 18,701)
    • epidemiology: 593 (rank: 3,252 out of 9,545)
    • evolutionary biology: 440 (rank: 12,634 (tie) out of 21,815)
    • genetics: 865 (rank: 15,347 (tie) out of 38,046)
    • genomics: 14,024 (rank: 944 out of 44,718)
    • immunology: 606 (rank: 10,237 (tie) out of 26,596)
    • microbiology: 18,987 (rank: 531 out of 50,859)
    • molecular biology: 1,937 (rank: 1,720 out of 23,548)
    • neuroscience: 1,299 (rank: 14,376 (tie) out of 72,396)
    • physiology: 271 (rank: 4,836 (tie) out of 9,591)
    • systems biology: 948 (rank: 3,717 out of 12,502)

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Preprints

Structure of RNA-dependent RNA polymerase from 2019-nCoV, a major antiviral drug target

biochemistry more details view paper
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Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
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Evaluation of Natural and Botanical Medicines for Activity against Growing and Non-growing Forms of B. burgdorferi

microbiology more details view paper
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High Activity Of Selective Essential Oils Against Stationary Phase Borrelia burgdorferi As A Persister Model

microbiology more details view paper
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De novo assembly and phasing of dikaryotic genomes from two isolates of Puccinia coronata f. sp. avenae, the causal agent of oat crown rust

genomics more details view paper
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Genome-wide characterization of PRE-1 reveals a hidden evolutionary relationship between suidae and primates

genomics more details view paper
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A thermostable, closed, SARS-CoV-2 spike protein trimer.

biochemistry more details view paper
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Template switching causes artificial junction formation and false identification of circular RNAs

molecular biology more details view paper
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Additional Essential Oils with High Activity against Stationary Phase Borrelia burgdorferi

microbiology more details view paper
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Biofilm/Persister/Stationary Phase Bacteria Cause More Severe Disease Than Log Phase Bacteria I Biofilm Borrelia burgdorferi Not Only Display More Tolerance to Lyme Antibiotics But Also Cause More Severe Pathology In a Mouse Arthritis Model: Implications for Understanding Persistence, PTLDS and Treatment Failure

microbiology more details view paper
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H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions

genomics more details view paper
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The Genome of the Zebra Mussel, Dreissena polymorpha: A Resource for Invasive Species Research

genomics more details view paper
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Discovering in vivo cytokine eQTL interactions from a lupus clinical trial

genomics more details view paper
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Identification of essential oils with activity against stationary phase Staphylococcus aureus

microbiology more details view paper
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Local and global chromatin interactions are altered by large genomic deletions associated with human brain development

genetics more details view paper
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Predicting chromatin interactions between open chromatin regions from DNA sequences

bioinformatics more details view paper
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Identification of essential oils with strong activity against stationary phase uropathogenic Escherichia coli

microbiology more details view paper
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High-throughput single-particle tracking reveals nested membrane nanodomain organization that dictates Ras diffusion and trafficking

biophysics more details view paper
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An Array of 60,000 Antibodies for Proteome-Scale Antibody Generation and Target Discovery

systems biology more details view paper
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Mutations in efflux pump Rv1258c (Tap) cause resistance to pyrazinamide and other drugs in M. tuberculosis

microbiology more details view paper
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SARS-CoV-2 Nsp1 suppresses host but not viral translation through a bipartite mechanism

cell biology more details view paper
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The influence of molecular reach and diffusivity on the efficacy of membrane-confined reactions

biophysics more details view paper
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Biofilm/Persister/Stationary Phase Bacteria Cause More Severe Disease Than Log Phase Bacteria II Infection with Persister Forms of Staphylococcus aureus Causes a Chronic Persistent Skin Infection with More Severe Lesion that Takes Longer to Heal and is not Eradicated by the Current Recommended Treatment in Mice

microbiology more details view paper
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A valid protective immune response elicited in rhesus macaques by an inactivated vaccine is capable of defending against SARS-CoV-2 infection

immunology more details view paper
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Activity of Sulfa Drugs and Their Combinations against Stationary Phase B. burgdorferi in vitro

microbiology more details view paper
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TP63, SOX2 and KLF5 Establish Core Regulatory Circuitry and Construct Cancer Specific Epigenome in Esophageal Squamous Cell Carcinoma

cancer biology more details view paper
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Chinese Glioma Genome Atlas (CGGA): A Comprehensive Resource with Functional Genomic Data for Chinese Glioma Patients

genomics more details view paper
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Identification of a Novel Gene argJ involved in Arginine Biosynthesis Critical for Persister Formation in Staphylococcus aureus

microbiology more details view paper
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Molecular evolution of SARS-CoV-2 structural genes: evidence of positive selection in spike glycoprotein

evolutionary biology more details view paper
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Variation in genome content and predatory phenotypes between Bdellovibrio sp. NC01 isolated from soil and B. bacteriovorus type strain HD100

microbiology more details view paper
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Modeling the relative role of human mobility, land-use and climate factors on dengue outbreak emergence in Sri Lanka

epidemiology more details view paper
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A comprehensive plasma metabolomics dataset for a cohort of mouse knockouts within the international mouse phenotyping consortium

bioinformatics more details view paper
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Identification of disease resistance genes from a Chinese wild grapevine (Vitis davidii) by analysing grape transcriptomes and transgenic Arabidopsis

molecular biology more details view paper
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Specific miRNA-GPCR networks regulate Sox9a/Sox9b activities to promote gonadal renewal in zebrafish

developmental biology more details view paper
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Cyclin B3 is specifically required for metaphase to anaphase transition in mouse oocyte meiosis I

cell biology more details view paper
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A dynamic role for dopamine receptors in the control of mammalian spinal networks

neuroscience more details view paper
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Identification of drug candidates that enhance pyrazinamide activity from a clinical drug library

microbiology more details view paper
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Role of DNA Methylation in Persister Formation in Uropathogenic E. coli

microbiology more details view paper
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Integrative Modeling of a Sin3/HDAC Complex Sub-structure

biochemistry more details view paper
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Clofazimine targets essential nucleoid associated protein, mycobacterial integration host factor (mIHF), in Mycobacterium tuberculosis

microbiology more details view paper
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Identification of small regulatory RNAs involved in persister formation

microbiology more details view paper
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Crosstalk between invadopodia and the extracellular matrix

cancer biology more details view paper
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Proteomic Analyses of Morphological Variants of Borrelia burgdorferi Shed New Light on Persistence Mechanisms: Implications for Pathogenesis, Diagnosis and Treatment

microbiology more details view paper
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ErbB4 deletion in noradrenergic neurons in the locus coeruleus induces mania-like behavior via elevated catecholamines

neuroscience more details view paper
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Identification of Polynucleotide Phosphorylase (PNPase) in Escherichia coli Involved in Persister Formation

microbiology more details view paper
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Identification of novel mutations associated with clofazimine resistance in Mycobacterium abscessus

microbiology more details view paper
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A Drug Combination Approach Targeting Both Growing Bacteria and Dormant Persisters Eradicate Persistent Staphylococcus aureus Biofilm Infection

microbiology more details view paper
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UNC-45A is preferentially expressed in epithelial cells and binds to and co-localizes with interphase MTs

cell biology more details view paper
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The circulating lipidome is largely defined by sex descriptors in the GOLDN, GeneBank and the ADNI studies

biochemistry more details view paper
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Spinal V3 interneurons and left-right coordination in mammalian locomotion

neuroscience more details view paper
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Identification of Genes Regulating Cell Death in Staphylococcus aureus

microbiology more details view paper
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Organized cannabinoid receptor distribution in neurons revealed by super-resolution fluorescence imaging

neuroscience more details view paper
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Varying Effects of Common Tuberculosis Drugs on Enhancing Clofazimine Activity in vitro

microbiology more details view paper
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Identification of novel genes including rpmF and yjjQ critical for Type II persister formation in Escherichia coli

microbiology more details view paper
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The evolving systemic biomarker milieu in obese ZSF1 rat model of human cardiometabolic syndrome: Characterization of the model and cardioprotective effect of GDF15

physiology more details view paper
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Development of a novel signature of long noncoding RNAs as a prognostic biomarker for esophageal cancer

bioinformatics more details view paper
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Driving Integrative Structural Modeling with Serial Capture Affinity Purification

systems biology more details view paper
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MGMT genomic rearrangements contribute to chemotherapy resistance in gliomas

cancer biology more details view paper
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Introducing RpsA Point Mutation Δ438A or D123A into the Chromosome of M. tuberculosis Confirms its Role in Causing Resistance to Pyrazinamide

microbiology more details view paper
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Identification of novel mutations in LprG (rv1411c), rv0521, rv3630, rv0010c, ppsC, cyp128 associated with pyrazinoic acid/pyrazinamide resistance in Mycobacterium tuberculosis

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Ranking of Major Classes of Antibiotics for Activity against Stationary Phase Pseudomonas aeruginosa and Identification of Clinafloxacin + Cefuroxime + Gentamicin Drug Combination that Eradicates Persistent P. aeruginosa Infection in a Murine Cystic Fibrosis Model

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Identifying the diagnostic value of microRNA-421 in gastric cancer patients: a meta-analysis

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Fibroblast Protection of Borrelia burgdorferi from Doxycycline, Cefuroxime and Daptomycin Combination is Eliminated by Oregano or Carvacrol Essential Oil

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Cooperation-based sperm clusters mediate sperm oviduct entry and fertilization

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Histone demethylase complexes KDM3A and KDM3B cooperate with OCT4/SOX2 to construct pluripotency gene regulatory network

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A Novel LysR-Type Global Regulator RpvA Controls Persister Formation and Virulence in Staphylococcus aureus

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Botanical Medicines with Activity against Stationary Phase Bartonella henselae

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DLDTI: A learning-based framework for identification of drug-target interaction using neural networks and network representation

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The plasticity of the pyruvate dehydrogenase complex confers a labile structure that is associated with its catalytic activity

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Diversity and Function of the Eastern Oyster (Crassostrea virginica) Microbiome

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FARCI: Fast and Robust Connectome Inference

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Species composition and dynamics of aphids and parasitoid wasps in maize fields in Northeastern China

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