Rxivist logo

Author: Manolis Kellis

Rankings

  • All-time downloads: 75,466 (rank: 1,718 )
  • Categories:
    • bioinformatics: 10,663 (rank: 616 )
    • cancer biology: 4,280 (rank: 679 )
    • cell biology: 1,732 (rank: 3,172 (tie) )
    • developmental biology: 1,011 (rank: 3,226 (tie) )
    • epidemiology: 609 (rank: 11,116 (tie) )
    • evolutionary biology: 479 (rank: 12,950 (tie) )
    • genetics: 9,767 (rank: 1,664 )
    • genomics: 36,703 (rank: 214 )
    • infectious diseases: 1,984 (rank: 11,828 (tie) )
    • molecular biology: 2,623 (rank: 1,322 )
    • neuroscience: 461 (rank: 42,034 (tie) )
    • psychiatry and clinical psychology: 1,960 (rank: 205 (tie) )
    • synthetic biology: 1,436 (rank: 971 (tie) )
    • systems biology: 1,758 (rank: 2,136 (tie) )

Downloads per author, site-wide

Preprints

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

genomics more details view paper
  • Downloaded 5,361 times
  • Download rankings, all-time:
    • Site-wide: 1,580
    • In genomics: 161
  • Year to date:
    • Site-wide: 11,884
  • Since beginning of last month:
    • Site-wide: 10,265

Local genetic effects on gene expression across 44 human tissues

genomics more details view paper
  • Downloaded 4,411 times
  • Download rankings, all-time:
    • Site-wide: 2,069
    • In genomics: 240
  • Year to date:
    • Site-wide: 85,324
  • Since beginning of last month:
    • Site-wide: 31,531

High-resolution genome-wide functional dissection of transcriptional regulatory regions in human

genomics more details view paper
  • Downloaded 3,882 times
  • Download rankings, all-time:
    • Site-wide: 2,485
    • In genomics: 300
  • Year to date:
    • Site-wide: 66,843
  • Since beginning of last month:
    • Site-wide: 70,400

Phylogenetic Identification and Functional Characterization of Orthologs and Paralogs across Human, Mouse, Fly, and Worm

genomics more details view paper
  • Downloaded 3,401 times
  • Download rankings, all-time:
    • Site-wide: 3,028
    • In genomics: 365
  • Year to date:
    • Site-wide: 8,745
  • Since beginning of last month:
    • Site-wide: 11,170

A Bayesian approach to mediation analysis predicts 206 causal target genes in Alzheimer's disease

genetics more details view paper
  • Downloaded 3,258 times
  • Download rankings, all-time:
    • Site-wide: 3,232
    • In genetics: 138
  • Year to date:
    • Site-wide: 9,365
  • Since beginning of last month:
    • Site-wide: 11,405

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

cancer biology more details view paper
  • Downloaded 3,187 times
  • Download rankings, all-time:
    • Site-wide: 3,336
    • In cancer biology: 52
  • Year to date:
    • Site-wide: 2,621
  • Since beginning of last month:
    • Site-wide: 2,606

Integrative analysis of 10,000 epigenomic maps across 800 samples for regulatory genomics and disease dissection

genomics more details view paper
  • Downloaded 2,846 times
  • Download rankings, all-time:
    • Site-wide: 3,891
    • In genomics: 463
  • Year to date:
    • Site-wide: 3,432
  • Since beginning of last month:
    • Site-wide: 4,114

Distant regulatory effects of genetic variation in multiple human tissues

genomics more details view paper
  • Downloaded 2,736 times
  • Download rankings, all-time:
    • Site-wide: 4,107
    • In genomics: 489
  • Year to date:
    • Site-wide: 67,612
  • Since beginning of last month:
    • Site-wide: 38,118

Simultaneous profiling of DNA methylation and chromatin architecture in mixed populations and in single cells

genomics more details view paper
  • Downloaded 2,390 times
  • Download rankings, all-time:
    • Site-wide: 5,047
    • In genomics: 614
  • Year to date:
    • Site-wide: 24,303
  • Since beginning of last month:
    • Site-wide: 40,424

DECODE-ing sparsity patterns in single-cell RNA-seq

bioinformatics more details view paper
  • Downloaded 2,223 times
  • Download rankings, all-time:
    • Site-wide: 5,622
    • In bioinformatics: 680
  • Year to date:
    • Site-wide: 59,990
  • Since beginning of last month:
    • Site-wide: 70,380

Deep-coverage whole genome sequences and blood lipids among 16,324 individuals

genomics more details view paper
  • Downloaded 2,083 times
  • Download rankings, all-time:
    • Site-wide: 6,159
    • In genomics: 724
  • Year to date:
    • Site-wide: 99,017
  • Since beginning of last month:
    • Site-wide: 117,644

SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes

genomics more details view paper
  • Downloaded 2,048 times
  • Download rankings, all-time:
    • Site-wide: 6,318
    • In genomics: 742
  • Year to date:
    • Site-wide: 5,670
  • Since beginning of last month:
    • Site-wide: 4,981

A probabilistic framework to dissect functional cell-type-specific regulatory elements and risk loci underlying the genetics of complex traits

bioinformatics more details view paper
  • Downloaded 2,022 times
  • Download rankings, all-time:
    • Site-wide: 6,442
    • In bioinformatics: 793
  • Year to date:
    • Site-wide: 48,473
  • Since beginning of last month:
    • Site-wide: 49,769

Mathematical analysis of Cordoba calcifediol trial suggests strong role for Vitamin D in reducing ICU admissions of hospitalized COVID-19 patients

infectious diseases more details view paper
  • Downloaded 1,984 times
  • Download rankings, all-time:
    • Site-wide: 6,605
    • In infectious diseases: 872
  • Year to date:
    • Site-wide: 672
  • Since beginning of last month:
    • Site-wide: 300

Single-cell dissection of schizophrenia reveals neurodevelopmental-synaptic axis and transcriptional resilience

psychiatry and clinical psychology more details view paper
  • Downloaded 1,960 times
  • Download rankings, all-time:
    • Site-wide: 6,741
    • In psychiatry and clinical psychology: 18
  • Year to date:
    • Site-wide: 1,930
  • Since beginning of last month:
    • Site-wide: 537

mRNA structure dynamics identifies the embryonic RNA regulome

molecular biology more details view paper
  • Downloaded 1,902 times
  • Download rankings, all-time:
    • Site-wide: 7,050
    • In molecular biology: 170
  • Year to date:
    • Site-wide: 45,020
  • Since beginning of last month:
    • Site-wide: 56,112

Modeling prediction error improves power of transcriptome-wide association studies

genetics more details view paper
  • Downloaded 1,822 times
  • Download rankings, all-time:
    • Site-wide: 7,488
    • In genetics: 372
  • Year to date:
    • Site-wide: 25,719
  • Since beginning of last month:
    • Site-wide: 33,551

A multiresolution framework to characterize single-cell state landscapes

genomics more details view paper
  • Downloaded 1,815 times
  • Download rankings, all-time:
    • Site-wide: 7,533
    • In genomics: 857
  • Year to date:
    • Site-wide: 18,568
  • Since beginning of last month:
    • Site-wide: 30,165

Best practices for genome-wide RNA structure analysis: combination of mutational profiles and drop-off information

bioinformatics more details view paper
  • Downloaded 1,801 times
  • Download rankings, all-time:
    • Site-wide: 7,616
    • In bioinformatics: 967
  • Year to date:
    • Site-wide: 21,872
  • Since beginning of last month:
    • Site-wide: 13,189

Multi-tissue polygenic models for transcriptome-wide association studies

genetics more details view paper
  • Downloaded 1,778 times
  • Download rankings, all-time:
    • Site-wide: 7,770
    • In genetics: 385
  • Year to date:
    • Site-wide: 91,609
  • Since beginning of last month:
    • Site-wide: 68,262

Single-cell interactomes of the human brain reveal cell-type specific convergence of brain disorders

systems biology more details view paper
  • Downloaded 1,758 times
  • Download rankings, all-time:
    • Site-wide: 7,902
    • In systems biology: 146
  • Year to date:
    • Site-wide: 74,915
  • Since beginning of last month:
    • Site-wide: 26,195

Conserved epigenetic regulatory logic infers genes governing cell identity

cell biology more details view paper
  • Downloaded 1,732 times
  • Download rankings, all-time:
    • Site-wide: 8,099
    • In cell biology: 199
  • Year to date:
    • Site-wide: 36,761
  • Since beginning of last month:
    • Site-wide: 16,175

Convergence of dispersed regulatory mutations predicts driver genes in prostate cancer

genomics more details view paper
  • Downloaded 1,718 times
  • Download rankings, all-time:
    • Site-wide: 8,198
    • In genomics: 946
  • Year to date:
    • Site-wide: 13,938
  • Since beginning of last month:
    • Site-wide: 57,526

Nearly all new protein-coding predictions in the CHESS database are not protein-coding

genomics more details view paper
  • Downloaded 1,659 times
  • Download rankings, all-time:
    • Site-wide: 8,680
    • In genomics: 1,007
  • Year to date:
    • Site-wide: 40,315
  • Since beginning of last month:
    • Site-wide: 29,141

Genome-wide regulatory model from MPRA data predicts functional regions, eQTLs, and GWAS hits

bioinformatics more details view paper
  • Downloaded 1,598 times
  • Download rankings, all-time:
    • Site-wide: 9,182
    • In bioinformatics: 1,153
  • Year to date:
    • Site-wide: 48,715
  • Since beginning of last month:
    • Site-wide: 93,265

High-Throughput 5′ UTR Engineering for Enhanced Protein Production in Non-Viral Gene Therapies

synthetic biology more details view paper
  • Downloaded 1,436 times
  • Download rankings, all-time:
    • Site-wide: 10,736
    • In synthetic biology: 116
  • Year to date:
    • Site-wide: 29,962
  • Since beginning of last month:
    • Site-wide: 7,422

Functional enrichments of disease variants across thousands of independent loci in eight diseases

genetics more details view paper
  • Downloaded 1,246 times
  • Download rankings, all-time:
    • Site-wide: 13,335
    • In genetics: 689
  • Year to date:
    • Site-wide: 55,228
  • Since beginning of last month:
    • Site-wide: 96,288

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs.

developmental biology more details view paper
  • Downloaded 1,011 times
  • Download rankings, all-time:
    • Site-wide: 18,267
    • In developmental biology: 321
  • Year to date:
    • Site-wide: 47,777
  • Since beginning of last month:
    • Site-wide: 35,165

Predicting trait regulators by identifying co-localization of DNA binding and GWAS variants in regulatory regions

bioinformatics more details view paper
  • Downloaded 908 times
  • Download rankings, all-time:
    • Site-wide: 21,312
    • In bioinformatics: 2,602
  • Year to date:
    • Site-wide: 69,529
  • Since beginning of last month:
    • Site-wide: 76,233

Evidence of a recombination rate valley in human regulatory domains

genomics more details view paper
  • Downloaded 898 times
  • Download rankings, all-time:
    • Site-wide: 21,665
    • In genomics: 2,183
  • Year to date:
    • Site-wide: 92,879
  • Since beginning of last month:
    • Site-wide: 78,214

A causal inference framework for estimating genetic variance and pleiotropy from GWAS summary data

bioinformatics more details view paper
  • Downloaded 871 times
  • Download rankings, all-time:
    • Site-wide: 22,661
    • In bioinformatics: 2,760
  • Year to date:
    • Site-wide: 28,845
  • Since beginning of last month:
    • Site-wide: 61,415

Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries

genomics more details view paper
  • Downloaded 731 times
  • Download rankings, all-time:
    • Site-wide: 28,970
    • In genomics: 2,676
  • Year to date:
    • Site-wide: 58,621
  • Since beginning of last month:
    • Site-wide: 115,808

Genus-wide characterization of bumblebee genomes reveals variation associated with key ecological and behavioral traits of pollinators

genomics more details view paper
  • Downloaded 724 times
  • Download rankings, all-time:
    • Site-wide: 29,313
    • In genomics: 2,708
  • Year to date:
    • Site-wide: 18,376
  • Since beginning of last month:
    • Site-wide: 17,554

Evolutionary dynamics of abundant stop codon readthrough in Anopheles and Drosophila

molecular biology more details view paper
  • Downloaded 721 times
  • Download rankings, all-time:
    • Site-wide: 29,543
    • In molecular biology: 839
  • Year to date:
    • Site-wide: 116,926
  • Since beginning of last month:
    • Site-wide: 36,931

RiVIERA-beta: Joint Bayesian inference of risk variants and tissue-specific epigenomic enrichments across multiple complex human diseases

bioinformatics more details view paper
  • Downloaded 695 times
  • Download rankings, all-time:
    • Site-wide: 30,979
    • In bioinformatics: 3,573
  • Year to date:
    • Site-wide: 112,995
  • Since beginning of last month:
    • Site-wide: 110,859

Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization

epidemiology more details view paper
  • Downloaded 609 times
  • Download rankings, all-time:
    • Site-wide: 36,887
    • In epidemiology: 1,726
  • Year to date:
    • Site-wide: 111,409
  • Since beginning of last month:
    • Site-wide: 121,386

Analysis of Genetically Regulated Gene Expression identifies a trauma type specific PTSD gene, SNRNP35

genetics more details view paper
  • Downloaded 603 times
  • Download rankings, all-time:
    • Site-wide: 37,327
    • In genetics: 1,856
  • Year to date:
    • Site-wide: 93,766
  • Since beginning of last month:
    • Site-wide: 101,691

Evidence for secondary-variant genetic burden and non-random distribution across biological modules in a recessive ciliopathy

genetics more details view paper
  • Downloaded 564 times
  • Download rankings, all-time:
    • Site-wide: 40,623
    • In genetics: 1,982
  • Year to date:
    • Site-wide: 47,839
  • Since beginning of last month:
    • Site-wide: 77,096

Plasma-derived exosomal analysis and deconvolution enables prediction and tracking of melanoma checkpoint blockade response

cancer biology more details view paper
  • Downloaded 563 times
  • Download rankings, all-time:
    • Site-wide: 40,744
    • In cancer biology: 1,135
  • Year to date:
    • Site-wide: 43,390
  • Since beginning of last month:
    • Site-wide: 47,531

Correlating predicted epigenetic marks with expression data to find interactions between SNPs and genes

bioinformatics more details view paper
  • Downloaded 545 times
  • Download rankings, all-time:
    • Site-wide: 42,458
    • In bioinformatics: 4,604
  • Year to date:
    • Site-wide: 87,444
  • Since beginning of last month:
    • Site-wide: 53,858

Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival

cancer biology more details view paper
  • Downloaded 530 times
  • Download rankings, all-time:
    • Site-wide: 43,938
    • In cancer biology: 1,228
  • Year to date:
    • Site-wide: 118,855
  • Since beginning of last month:
    • Site-wide: 119,787

Various localized epigenetic marks predict expression across 54 samples and reveal underlying chromatin state enrichments

genetics more details view paper
  • Downloaded 496 times
  • Download rankings, all-time:
    • Site-wide: 47,456
    • In genetics: 2,310
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 113,267

Elucidation of Codon Usage Signatures across the Domains of Life

evolutionary biology more details view paper
  • Downloaded 479 times
  • Download rankings, all-time:
    • Site-wide: 49,421
    • In evolutionary biology: 2,800
  • Year to date:
    • Site-wide: 100,850
  • Since beginning of last month:
    • Site-wide: 121,200

Exome-wide age-of-onset analysis reveals exonic variants in ERN1, TACR3 and SPPL2C associated with Alzheimer's disease

neuroscience more details view paper
  • Downloaded 461 times
  • Download rankings, all-time:
    • Site-wide: 51,645
    • In neuroscience: 7,821
  • Year to date:
    • Site-wide: 74,272
  • Since beginning of last month:
    • Site-wide: 76,665

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News