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Author: Raphael Gottardo

Rankings

  • All-time downloads: 25,629 (rank: 2,308 out of 448,705)
  • Categories:
    • bioinformatics: 7,295 (rank: 1,106 (tie) out of 36,834)
    • genomics: 11,437 (rank: 1,370 out of 45,497)
    • immunology: 6,897 (rank: 622 out of 27,691)

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Preprints

Integrated analysis of multimodal single-cell data

genomics more details view paper
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    • Site-wide: 541 out of 106,112
    • In genomics: 110 out of 6,382
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    • Site-wide: 203 out of 106,112
  • Since beginning of last month:
    • Site-wide: 9 out of 106,112

Orchestrating Single-Cell Analysis with Bioconductor

genomics more details view paper
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    • In genomics: 337 out of 6,382
  • Year to date:
    • Site-wide: 2,924 out of 106,112
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    • Site-wide: 5,001 out of 106,112

A targeted multi-omic analysis approach measures protein expression and low abundance transcripts on the single cell level

immunology more details view paper
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    • Site-wide: 2,610 out of 106,112
    • In immunology: 94 out of 3,257
  • Year to date:
    • Site-wide: 4,232 out of 106,112
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    • Site-wide: 10,660 out of 106,112

New interpretable machine learning method for single-cell data reveals correlates of clinical response to cancer immunotherapy

bioinformatics more details view paper
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    • Site-wide: 2,990 out of 106,112
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    • Site-wide: 2,436 out of 106,112
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    • Site-wide: 7,203 out of 106,112

Infinity Flow: High-throughput single-cell quantification of 100s of proteins using conventional flow cytometry and machine learning

immunology more details view paper
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    • In immunology: 152 out of 3,257
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    • Site-wide: 1,012 out of 106,112
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    • Site-wide: 310 out of 106,112

Multiomic Immunophenotyping of COVID-19 Patients Reveals Early Infection Trajectories

immunology more details view paper
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    • Site-wide: 4,592 out of 106,112
    • In immunology: 158 out of 3,257
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    • Site-wide: 1,047 out of 106,112
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MAST: A flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA-seq data.

bioinformatics more details view paper
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    • Site-wide: 12,133 out of 106,112
    • In bioinformatics: 1,910 out of 9,474
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    • Site-wide: 86,186 out of 106,112
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    • Site-wide: 58,951 out of 106,112

Single-cell analysis of chromatin silencing programs in developmental and tumor progression

genomics more details view paper
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    • Site-wide: 12,723 out of 106,112
    • In genomics: 1,707 out of 6,382
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    • Site-wide: 2,675 out of 106,112
  • Since beginning of last month:
    • Site-wide: 872 out of 106,112

Modeling bi-modality improves characterization of cell cycle on gene expression in single cells

bioinformatics more details view paper
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    • Site-wide: 15,433 out of 106,112
    • In bioinformatics: 2,331 out of 9,474
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    • Site-wide: 85,546 out of 106,112
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    • Site-wide: 52,420 out of 106,112

BayesSpace enables the robust characterization of spatial gene expression architecture in tissue sections at increased resolution

bioinformatics more details view paper
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    • Site-wide: 16,857 out of 106,112
    • In bioinformatics: 2,536 out of 9,474
  • Year to date:
    • Site-wide: 3,466 out of 106,112
  • Since beginning of last month:
    • Site-wide: 603 out of 106,112

cytometree: a binary tree algorithm for automatic gating in cytometry analysis

bioinformatics more details view paper
  • Downloaded 689 times
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    • Site-wide: 24,672 out of 106,112
    • In bioinformatics: 3,401 out of 9,474
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    • Site-wide: 54,546 out of 106,112
  • Since beginning of last month:
    • Site-wide: 45,800 out of 106,112

DataPackageR: Reproducible data preprocessing, standardization and sharing using R/Bioconductor for collaborative data analysis.

bioinformatics more details view paper
  • Downloaded 667 times
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    • Site-wide: 25,809 out of 106,112
    • In bioinformatics: 3,527 out of 9,474
  • Year to date:
    • Site-wide: 58,156 out of 106,112
  • Since beginning of last month:
    • Site-wide: 70,172 out of 106,112

Reply to "A discriminative learning approach to differential expression analysis for single-cell RNA-seq"

bioinformatics more details view paper
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    • Site-wide: 35,115 out of 106,112
    • In bioinformatics: 4,446 out of 9,474
  • Year to date:
    • Site-wide: 61,696 out of 106,112
  • Since beginning of last month:
    • Site-wide: 60,152 out of 106,112

CD32+ and PD-1+ Lymph Node CD4 T Cells Support Persistent HIV-1 Transcription in Treated Aviremic Individuals

immunology more details view paper
  • Downloaded 283 times
  • Download rankings, all-time:
    • Site-wide: 65,869 out of 106,112
    • In immunology: 1,929 out of 3,257
  • Year to date:
    • Site-wide: 94,785 out of 106,112
  • Since beginning of last month:
    • Site-wide: 80,461 out of 106,112

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