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Author: Morten Nielsen

  • ORCiD: http://orcid.org/0000-0001-7885-4311
  • Most recently observed institution: Department of Health Technology, Technical University of Denmark. Instituto de Investigaciones Biotecnologicas, Universidad Nacional de San Martin

Rankings

  • All-time downloads: 94,394 (rank: 1,165 )
  • Categories:
    • bioinformatics: 10,449 (rank: 641 )
    • immunology: 83,945 (rank: 1 )

Downloads per author, site-wide

Preprints

Robust T cell immunity in convalescent individuals with asymptomatic or mild COVID-19

immunology more details view paper
  • Downloaded 79,267 times
  • Download rankings, all-time:
    • Site-wide: 59
    • In immunology: 1
  • Year to date:
    • Site-wide: 276
  • Since beginning of last month:
    • Site-wide: 211

NetTCR: sequence-based prediction of TCR binding to peptide-MHC complexes using convolutional neural networks

bioinformatics more details view paper
  • Downloaded 4,102 times
  • Download rankings, all-time:
    • Site-wide: 2,297
    • In bioinformatics: 215
  • Year to date:
    • Site-wide: 5,666
  • Since beginning of last month:
    • Site-wide: 7,340

NetMHCpan 4.0: Improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data

bioinformatics more details view paper
  • Downloaded 2,115 times
  • Download rankings, all-time:
    • Site-wide: 6,036
    • In bioinformatics: 741
  • Year to date:
    • Site-wide: 27,406
  • Since beginning of last month:
    • Site-wide: 64,246

NetSurfP-2.0: improved prediction of protein structural features by integrated deep learning

bioinformatics more details view paper
  • Downloaded 1,972 times
  • Download rankings, all-time:
    • Site-wide: 6,676
    • In bioinformatics: 831
  • Year to date:
    • Site-wide: 8,021
  • Since beginning of last month:
    • Site-wide: 15,055

SARS-CoV-2 genome-wide mapping of CD8 T cell recognition reveals strong immunodominance and substantial CD8 T cell activation in COVID-19 patients

immunology more details view paper
  • Downloaded 994 times
  • Download rankings, all-time:
    • Site-wide: 18,753
    • In immunology: 503
  • Year to date:
    • Site-wide: 2,025
  • Since beginning of last month:
    • Site-wide: 5,498

Improved prediction of MHC II antigen presentation through integration and motif deconvolution of mass spectrometry MHC eluted ligand data

bioinformatics more details view paper
  • Downloaded 867 times
  • Download rankings, all-time:
    • Site-wide: 22,810
    • In bioinformatics: 2,786
  • Year to date:
    • Site-wide: 11,991
  • Since beginning of last month:
    • Site-wide: 27,333

Footprints of antigen processing boost MHC class II natural ligand binding predictions

immunology more details view paper
  • Downloaded 684 times
  • Download rankings, all-time:
    • Site-wide: 31,647
    • In immunology: 840
  • Year to date:
    • Site-wide: 63,501
  • Since beginning of last month:
    • Site-wide: 110,035

Benchmarking predictions of MHC class I restricted T cell epitopes

immunology more details view paper
  • Downloaded 674 times
  • Download rankings, all-time:
    • Site-wide: 32,382
    • In immunology: 859
  • Year to date:
    • Site-wide: 21,186
  • Since beginning of last month:
    • Site-wide: 52,278

NNAlign_MA; MHC peptidome deconvolution for accurate MHC binding motif characterization and improved T cell epitope predictions

bioinformatics more details view paper
  • Downloaded 652 times
  • Download rankings, all-time:
    • Site-wide: 33,772
    • In bioinformatics: 3,843
  • Year to date:
    • Site-wide: 55,988
  • Since beginning of last month:
    • Site-wide: 65,576

Computational Tools for the Identification and Interpretation of Sequence Motifs in Immunopeptidomes

bioinformatics more details view paper
  • Downloaded 544 times
  • Download rankings, all-time:
    • Site-wide: 42,550
    • In bioinformatics: 4,610
  • Year to date:
    • Site-wide: 96,623
  • Since beginning of last month:
    • Site-wide: 121,276

A systematic, unbiased mapping of CD8+ and CD4+ T cell epitopes in Yellow Fever vaccinees

immunology more details view paper
  • Downloaded 526 times
  • Download rankings, all-time:
    • Site-wide: 44,270
    • In immunology: 1,166
  • Year to date:
    • Site-wide: 13,972
  • Since beginning of last month:
    • Site-wide: 29,850

Sampling SARS-CoV-2 proteomes for predicted CD8 T-cell epitopes as a tool for understanding immunogenic breadth and rational vaccine design

immunology more details view paper
  • Downloaded 402 times
  • Download rankings, all-time:
    • Site-wide: 59,526
    • In immunology: 1,569
  • Year to date:
    • Site-wide: 49,754
  • Since beginning of last month:
    • Site-wide: 92,992

TCRMatch: Predicting T-cell receptor specificity based on sequence similarity to previously characterized receptors

immunology more details view paper
  • Downloaded 324 times
  • Download rankings, all-time:
    • Site-wide: 72,339
    • In immunology: 1,915
  • Year to date:
    • Site-wide: 4,608
  • Since beginning of last month:
    • Site-wide: 1,359

Characterisation of antigenic MHC Class I-restricted T cell epitopes in the glycoprotein of Ebolavirus

immunology more details view paper
  • Downloaded 315 times
  • Download rankings, all-time:
    • Site-wide: 73,820
    • In immunology: 1,972
  • Year to date:
    • Site-wide: 87,362
  • Since beginning of last month:
    • Site-wide: 94,173

HLA-class II specificity assessed by high-density peptide microarray interactions

immunology more details view paper
  • Downloaded 288 times
  • Download rankings, all-time:
    • Site-wide: 79,122
    • In immunology: 2,103
  • Year to date:
    • Site-wide: 87,786
  • Since beginning of last month:
    • Site-wide: 65,464

Improved prediction of Bovine Leucocyte Antigens (BoLA) presented ligands by use of MS eluted ligands and in-vitro binding data; impact for the identification T cell epitopes

immunology more details view paper
  • Downloaded 252 times
  • Download rankings, all-time:
    • Site-wide: 86,383
    • In immunology: 2,340
  • Year to date:
    • Site-wide: 110,967
  • Since beginning of last month:
    • Site-wide: 99,971

Utilizing Computational Machine Learning Tools to Understand Immunogenic Breadth in the Context of a CD8 T-Cell Mediated HIV Response

immunology more details view paper
  • Downloaded 219 times
  • Download rankings, all-time:
    • Site-wide: 93,376
    • In immunology: 2,531
  • Year to date:
    • Site-wide: 87,819
  • Since beginning of last month:
    • Site-wide: 60,172

Combined assessment of MHC binding and antigen expression improves T cell epitope predictions

bioinformatics more details view paper
  • Downloaded 118 times
  • Download rankings, all-time:
    • Site-wide: 112,994
    • In bioinformatics: 9,339
  • Year to date:
    • Site-wide: 47,350
  • Since beginning of last month:
    • Site-wide: 17,051

Integral use of immunopeptidomics and immunoinformatics for the characterization of antigen presentation and rational identification of BoLA-DR-presented peptides and epitopes

bioinformatics more details view paper
  • Downloaded 79 times
  • Download rankings, all-time:
    • Site-wide: 119,359
    • In bioinformatics: 9,688
  • Year to date:
    • Site-wide: 19,825
  • Since beginning of last month:
    • Site-wide: 10,294

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