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Author: Morten Nielsen

  • ORCiD: http://orcid.org/0000-0001-7885-4311
  • Most recently observed institution: Department of Health Technology, Section of Bioinformatics, Technical University of Denmark, Kongens Lyngby, Denmark

Rankings

  • All-time downloads: 88,876 (rank: 439 out of 427,351)
  • Categories:
    • bioinformatics: 9,765 (rank: 652 out of 36,237)
    • immunology: 79,111 (rank: 1 out of 26,608)

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Preprints

Robust T cell immunity in convalescent individuals with asymptomatic or mild COVID-19

immunology more details view paper
  • Downloaded 75,608 times
  • Download rankings, all-time:
    • Site-wide: 17 out of 101,171
    • In immunology: 1 out of 3,151
  • Year to date:
    • Site-wide: 13 out of 101,171
  • Since beginning of last month:
    • Site-wide: 13 out of 101,171

NetTCR: sequence-based prediction of TCR binding to peptide-MHC complexes using convolutional neural networks

bioinformatics more details view paper
  • Downloaded 3,877 times
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    • Site-wide: 1,378 out of 101,171
    • In bioinformatics: 224 out of 9,286
  • Year to date:
    • Site-wide: 2,027 out of 101,171
  • Since beginning of last month:
    • Site-wide: 4,361 out of 101,171

NetMHCpan 4.0: Improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data

bioinformatics more details view paper
  • Downloaded 2,077 times
  • Download rankings, all-time:
    • Site-wide: 3,953 out of 101,171
    • In bioinformatics: 703 out of 9,286
  • Year to date:
    • Site-wide: 17,684 out of 101,171
  • Since beginning of last month:
    • Site-wide: 42,576 out of 101,171

NetSurfP-2.0: improved prediction of protein structural features by integrated deep learning

bioinformatics more details view paper
  • Downloaded 1,869 times
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    • Site-wide: 4,749 out of 101,171
    • In bioinformatics: 847 out of 9,286
  • Year to date:
    • Site-wide: 8,990 out of 101,171
  • Since beginning of last month:
    • Site-wide: 7,856 out of 101,171

Improved prediction of MHC II antigen presentation through integration and motif deconvolution of mass spectrometry MHC eluted ligand data

bioinformatics more details view paper
  • Downloaded 785 times
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    • Site-wide: 19,704 out of 101,171
    • In bioinformatics: 2,893 out of 9,286
  • Year to date:
    • Site-wide: 6,785 out of 101,171
  • Since beginning of last month:
    • Site-wide: 13,629 out of 101,171

Footprints of antigen processing boost MHC class II natural ligand binding predictions

immunology more details view paper
  • Downloaded 656 times
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    • In immunology: 745 out of 3,151
  • Year to date:
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  • Since beginning of last month:
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NNAlign_MA; MHC peptidome deconvolution for accurate MHC binding motif characterization and improved T cell epitope predictions

bioinformatics more details view paper
  • Downloaded 622 times
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    • Site-wide: 27,527 out of 101,171
    • In bioinformatics: 3,713 out of 9,286
  • Year to date:
    • Site-wide: 30,165 out of 101,171
  • Since beginning of last month:
    • Site-wide: 31,359 out of 101,171

Benchmarking predictions of MHC class I restricted T cell epitopes

immunology more details view paper
  • Downloaded 609 times
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    • Site-wide: 28,361 out of 101,171
    • In immunology: 818 out of 3,151
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    • Site-wide: 24,230 out of 101,171
  • Since beginning of last month:
    • Site-wide: 43,586 out of 101,171

Computational Tools for the Identification and Interpretation of Sequence Motifs in Immunopeptidomes

bioinformatics more details view paper
  • Downloaded 535 times
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    • Site-wide: 33,544 out of 101,171
    • In bioinformatics: 4,285 out of 9,286
  • Year to date:
    • Site-wide: 78,601 out of 101,171
  • Since beginning of last month:
    • Site-wide: 82,414 out of 101,171

A systematic, unbiased mapping of CD8+ and CD4+ T cell epitopes in Yellow Fever vaccinees

immunology more details view paper
  • Downloaded 454 times
  • Download rankings, all-time:
    • Site-wide: 41,065 out of 101,171
    • In immunology: 1,179 out of 3,151
  • Year to date:
    • Site-wide: 8,957 out of 101,171
  • Since beginning of last month:
    • Site-wide: 16,849 out of 101,171

SARS-CoV-2 genome-wide mapping of CD8 T cell recognition reveals strong immunodominance and substantial CD8 T cell activation in COVID-19 patients

immunology more details view paper
  • Downloaded 439 times
  • Download rankings, all-time:
    • Site-wide: 42,545 out of 101,171
    • In immunology: 1,218 out of 3,151
  • Year to date:
    • Site-wide: 9,410 out of 101,171
  • Since beginning of last month:
    • Site-wide: 684 out of 101,171

Sampling SARS-CoV-2 proteomes for predicted CD8 T-cell epitopes as a tool for understanding immunogenic breadth and rational vaccine design

immunology more details view paper
  • Downloaded 355 times
  • Download rankings, all-time:
    • Site-wide: 53,138 out of 101,171
    • In immunology: 1,517 out of 3,151
  • Year to date:
    • Site-wide: 13,001 out of 101,171
  • Since beginning of last month:
    • Site-wide: 11,503 out of 101,171

Characterisation of antigenic MHC Class I-restricted T cell epitopes in the glycoprotein of Ebolavirus

immunology more details view paper
  • Downloaded 295 times
  • Download rankings, all-time:
    • Site-wide: 62,046 out of 101,171
    • In immunology: 1,764 out of 3,151
  • Year to date:
    • Site-wide: 84,926 out of 101,171
  • Since beginning of last month:
    • Site-wide: 92,183 out of 101,171

HLA-class II specificity assessed by high-density peptide microarray interactions

immunology more details view paper
  • Downloaded 267 times
  • Download rankings, all-time:
    • Site-wide: 66,809 out of 101,171
    • In immunology: 1,926 out of 3,151
  • Year to date:
    • Site-wide: 19,735 out of 101,171
  • Since beginning of last month:
    • Site-wide: 60,674 out of 101,171

Improved prediction of Bovine Leucocyte Antigens (BoLA) presented ligands by use of MS eluted ligands and in-vitro binding data; impact for the identification T cell epitopes

immunology more details view paper
  • Downloaded 241 times
  • Download rankings, all-time:
    • Site-wide: 71,402 out of 101,171
    • In immunology: 2,079 out of 3,151
  • Year to date:
    • Site-wide: 95,126 out of 101,171
  • Since beginning of last month:
    • Site-wide: 92,306 out of 101,171

Utilizing Computational Machine Learning Tools to Understand Immunogenic Breadth in the Context of a CD8 T-Cell Mediated HIV Response

immunology more details view paper
  • Downloaded 187 times
  • Download rankings, all-time:
    • Site-wide: 81,189 out of 101,171
    • In immunology: 2,404 out of 3,151
  • Year to date:
    • Site-wide: 32,096 out of 101,171
  • Since beginning of last month:
    • Site-wide: 25,502 out of 101,171

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