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Author: Paul Flicek

  • ORCiD: http://orcid.org/0000-0002-3897-7955
  • Most recently observed institution: European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom

Rankings

  • All-time downloads: 51,943 (rank: 2,680 )
  • Categories:
    • bioinformatics: 5,634 (rank: 2,036 )
    • cancer biology: 2,230 (rank: 2,292 )
    • evolutionary biology: 401 (rank: 15,603 (tie) )
    • genetics: 3,702 (rank: 4,671 (tie) )
    • genomics: 37,449 (rank: 219 )
    • immunology: 514 (rank: 16,492 (tie) )
    • neuroscience: 2,013 (rank: 10,687 (tie) )

Downloads per author, site-wide

Preprints

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
  • Downloaded 8,372 times
  • Download rankings, all-time:
    • Site-wide: 1,002
    • In genomics: 86
  • Year to date:
    • Site-wide: 39,997
  • Since beginning of last month:
    • Site-wide: 35,515

Towards complete and error-free genome assemblies of all vertebrate species

genomics more details view paper
  • Downloaded 5,211 times
  • Download rankings, all-time:
    • Site-wide: 1,867
    • In genomics: 183
  • Year to date:
    • Site-wide: 1,002
  • Since beginning of last month:
    • Site-wide: 783

The Ensembl Variant Effect Predictor

bioinformatics more details view paper
  • Downloaded 2,782 times
  • Download rankings, all-time:
    • Site-wide: 4,573
    • In bioinformatics: 486
  • Year to date:
    • Site-wide: 14,299
  • Since beginning of last month:
    • Site-wide: 11,260

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

genomics more details view paper
  • Downloaded 2,338 times
  • Download rankings, all-time:
    • Site-wide: 5,923
    • In genomics: 668
  • Year to date:
    • Site-wide: 33,109
  • Since beginning of last month:
    • Site-wide: 38,205

Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression

genomics more details view paper
  • Downloaded 2,167 times
  • Download rankings, all-time:
    • Site-wide: 6,605
    • In genomics: 736
  • Year to date:
    • Site-wide: 104,900
  • Since beginning of last month:
    • Site-wide: 91,763

Cell-type, single-cell, and spatial signatures of brain-region specific splicing in postnatal development

neuroscience more details view paper
  • Downloaded 2,013 times
  • Download rankings, all-time:
    • Site-wide: 7,349
    • In neuroscience: 743
  • Year to date:
    • Site-wide: 9,717
  • Since beginning of last month:
    • Site-wide: 24,691

Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution

genomics more details view paper
  • Downloaded 1,863 times
  • Download rankings, all-time:
    • Site-wide: 8,282
    • In genomics: 909
  • Year to date:
    • Site-wide: 94,368
  • Since beginning of last month:
    • Site-wide: 74,673

The tuatara genome: insights into vertebrate evolution from the sole survivor of an ancient reptilian order

genomics more details view paper
  • Downloaded 1,828 times
  • Download rankings, all-time:
    • Site-wide: 8,519
    • In genomics: 928
  • Year to date:
    • Site-wide: 21,979
  • Since beginning of last month:
    • Site-wide: 19,894

Chromosome assembly of large and complex genomes using multiple references

bioinformatics more details view paper
  • Downloaded 1,820 times
  • Download rankings, all-time:
    • Site-wide: 8,586
    • In bioinformatics: 1,043
  • Year to date:
    • Site-wide: 74,112
  • Since beginning of last month:
    • Site-wide: 74,334

Nearly all new protein-coding predictions in the CHESS database are not protein-coding

genomics more details view paper
  • Downloaded 1,750 times
  • Download rankings, all-time:
    • Site-wide: 9,112
    • In genomics: 998
  • Year to date:
    • Site-wide: 25,231
  • Since beginning of last month:
    • Site-wide: 43,049

Pervasive lesion segregation shapes cancer genome evolution

cancer biology more details view paper
  • Downloaded 1,717 times
  • Download rankings, all-time:
    • Site-wide: 9,380
    • In cancer biology: 169
  • Year to date:
    • Site-wide: 61,855
  • Since beginning of last month:
    • Site-wide: 77,204

An improved pig reference genome sequence to enable pig genetics and genomics research

genomics more details view paper
  • Downloaded 1,636 times
  • Download rankings, all-time:
    • Site-wide: 10,057
    • In genomics: 1,096
  • Year to date:
    • Site-wide: 30,089
  • Since beginning of last month:
    • Site-wide: 38,272

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,551 times
  • Download rankings, all-time:
    • Site-wide: 10,869
    • In genomics: 1,181
  • Year to date:
    • Site-wide: 36,613
  • Since beginning of last month:
    • Site-wide: 27,702

Comparative analysis of neutrophil and monocyte epigenomes

genomics more details view paper
  • Downloaded 1,514 times
  • Download rankings, all-time:
    • Site-wide: 11,244
    • In genomics: 1,219
  • Year to date:
    • Site-wide: 23,676
  • Since beginning of last month:
    • Site-wide: 16,461

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

genomics more details view paper
  • Downloaded 1,482 times
  • Download rankings, all-time:
    • Site-wide: 11,581
    • In genomics: 1,263
  • Year to date:
    • Site-wide: 60,490
  • Since beginning of last month:
    • Site-wide: 45,467

Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains

genomics more details view paper
  • Downloaded 1,351 times
  • Download rankings, all-time:
    • Site-wide: 13,366
    • In genomics: 1,429
  • Year to date:
    • Site-wide: 109,287
  • Since beginning of last month:
    • Site-wide: 110,804

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

genomics more details view paper
  • Downloaded 1,186 times
  • Download rankings, all-time:
    • Site-wide: 16,256
    • In genomics: 1,675
  • Year to date:
    • Site-wide: 65,610
  • Since beginning of last month:
    • Site-wide: 61,842

Genetic variation and gene expression across multiple tissues and developmental stages in a non-human primate

genetics more details view paper
  • Downloaded 1,142 times
  • Download rankings, all-time:
    • Site-wide: 17,212
    • In genetics: 841
  • Year to date:
    • Site-wide: 109,009
  • Since beginning of last month:
    • Site-wide: 104,266

High coverage whole genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios

genomics more details view paper
  • Downloaded 1,117 times
  • Download rankings, all-time:
    • Site-wide: 17,796
    • In genomics: 1,818
  • Year to date:
    • Site-wide: 936
  • Since beginning of last month:
    • Site-wide: 912

The evolutionary fates of a large segmental duplication in mouse

genetics more details view paper
  • Downloaded 1,019 times
  • Download rankings, all-time:
    • Site-wide: 20,370
    • In genetics: 980
  • Year to date:
    • Site-wide: 92,245
  • Since beginning of last month:
    • Site-wide: 104,844

Pseudogenes in the mouse lineage: transcriptional activity and strain-specific history

genomics more details view paper
  • Downloaded 1,012 times
  • Download rankings, all-time:
    • Site-wide: 20,561
    • In genomics: 2,062
  • Year to date:
    • Site-wide: 64,726
  • Since beginning of last month:
    • Site-wide: 87,515

Variation in PU.1 binding and chromatin looping at neutrophil enhancers influences autoimmune disease susceptibility

genetics more details view paper
  • Downloaded 808 times
  • Download rankings, all-time:
    • Site-wide: 28,324
    • In genetics: 1,376
  • Year to date:
    • Site-wide: 41,127
  • Since beginning of last month:
    • Site-wide: 39,854

LINE elements are a reservoir of regulatory potential in mammalian genomes

genomics more details view paper
  • Downloaded 798 times
  • Download rankings, all-time:
    • Site-wide: 28,788
    • In genomics: 2,649
  • Year to date:
    • Site-wide: 28,153
  • Since beginning of last month:
    • Site-wide: 41,095

A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

genetics more details view paper
  • Downloaded 733 times
  • Download rankings, all-time:
    • Site-wide: 32,469
    • In genetics: 1,573
  • Year to date:
    • Site-wide: 88,438
  • Since beginning of last month:
    • Site-wide: 110,939

Systematic re-annotation of 191 genes associated with early-onset epilepsy unmasks de novo variants linked to Dravet syndrome in novel SCN1A exons

genomics more details view paper
  • Downloaded 592 times
  • Download rankings, all-time:
    • Site-wide: 42,902
    • In genomics: 3,499
  • Year to date:
    • Site-wide: 77,935
  • Since beginning of last month:
    • Site-wide: 74,972

Ensembl Core Software Resources: storage and programmatic access for DNA sequence and genome annotation

bioinformatics more details view paper
  • Downloaded 540 times
  • Download rankings, all-time:
    • Site-wide: 48,084
    • In bioinformatics: 5,014
  • Year to date:
    • Site-wide: 120,415
  • Since beginning of last month:
    • Site-wide: 118,911

Epigenomic and functional dynamics of human bone marrow myeloid differentiation to mature blood neutrophils

immunology more details view paper
  • Downloaded 514 times
  • Download rankings, all-time:
    • Site-wide: 50,921
    • In immunology: 1,427
  • Year to date:
    • Site-wide: 112,727
  • Since beginning of last month:
    • Site-wide: 104,317

Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma

cancer biology more details view paper
  • Downloaded 513 times
  • Download rankings, all-time:
    • Site-wide: 51,049
    • In cancer biology: 1,419
  • Year to date:
    • Site-wide: 75,075
  • Since beginning of last month:
    • Site-wide: 95,301

Functional signatures of evolutionarily young CTCF binding sites

genomics more details view paper
  • Downloaded 474 times
  • Download rankings, all-time:
    • Site-wide: 55,851
    • In genomics: 4,229
  • Year to date:
    • Site-wide: 79,068
  • Since beginning of last month:
    • Site-wide: 46,295

A chromosome-level assembly of the Atlantic herring – detection of a supergene and other signals of selection

genomics more details view paper
  • Downloaded 473 times
  • Download rankings, all-time:
    • Site-wide: 56,023
    • In genomics: 4,232
  • Year to date:
    • Site-wide: 74,797
  • Since beginning of last month:
    • Site-wide: 56,856

Cell type specific novel lincRNAs and circRNAs in the BLUEPRINT haematopoietic transcriptomes atlas.

genomics more details view paper
  • Downloaded 430 times
  • Download rankings, all-time:
    • Site-wide: 61,934
    • In genomics: 4,515
  • Year to date:
    • Site-wide: 100,882
  • Since beginning of last month:
    • Site-wide: 120,000

Adaptation of proteins to the cold in Antarctic fish: A role for Methionine?

evolutionary biology more details view paper
  • Downloaded 401 times
  • Download rankings, all-time:
    • Site-wide: 66,358
    • In evolutionary biology: 3,638
  • Year to date:
    • Site-wide: 91,585
  • Since beginning of last month:
    • Site-wide: 115,321

Genome variation and conserved regulation identify genomic regions responsible for strain specific phenotypes in rat

genomics more details view paper
  • Downloaded 304 times
  • Download rankings, all-time:
    • Site-wide: 84,020
    • In genomics: 5,430
  • Year to date:
    • Site-wide: 122,883
  • Since beginning of last month:
    • Site-wide: 129,106

Soft Windowing Application to Improve Analysis of High-throughput Phenotyping Data

bioinformatics more details view paper
  • Downloaded 303 times
  • Download rankings, all-time:
    • Site-wide: 84,320
    • In bioinformatics: 7,600
  • Year to date:
    • Site-wide: 117,899
  • Since beginning of last month:
    • Site-wide: 128,202

The Ensembl COVID-19 resource: Ongoing integration of public SARS-CoV-2 data

bioinformatics more details view paper
  • Downloaded 189 times
  • Download rankings, all-time:
    • Site-wide: 109,298
    • In bioinformatics: 9,134
  • Year to date:
    • Site-wide: 32,637
  • Since beginning of last month:
    • Site-wide: None

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