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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,725 bioRxiv papers from 278,303 authors.

Author: Gil McVean

Rankings

  • All-time downloads: 56,331 (rank: 217 out of 278,303)
  • Categories:
    • bioinformatics: 20,552 (rank: 77 out of 24,398)
    • epidemiology: 586 (rank: 1,721 (tie) out of 9,528)
    • evolutionary biology: 3,886 (rank: 321 out of 15,234)
    • genetics: 18,978 (rank: 313 out of 27,714)
    • genomics: 12,329 (rank: 721 out of 31,927)

Downloads per author, site-wide

Preprints

New insights into malaria susceptibility from the genomes of 17,000 individuals from Africa, Asia, and Oceania

genetics more details view paper

No bioRxiv download data for this paper yet.

Genome-wide genetic data on ~500,000 UK Biobank participants

genetics more details view paper
  • Downloaded 13,700 times
  • Download rankings, all-time:
    • Site-wide: 57 out of 62,725
    • In genetics: 9 out of 3,562
  • Year to date:
    • Site-wide: 158 out of 62,725
  • Since beginning of last month:
    • Site-wide: 312 out of 62,725

Genome Graphs

bioinformatics more details view paper
  • Downloaded 7,608 times
  • Download rankings, all-time:
    • Site-wide: 177 out of 62,725
    • In bioinformatics: 31 out of 6,249
  • Year to date:
    • Site-wide: 913 out of 62,725
  • Since beginning of last month:
    • Site-wide: 1,968 out of 62,725

Real-time search of all bacterial and viral genomic data

bioinformatics more details view paper
  • Downloaded 5,483 times
  • Download rankings, all-time:
    • Site-wide: 341 out of 62,725
    • In bioinformatics: 64 out of 6,249
  • Year to date:
    • Site-wide: 1,545 out of 62,725
  • Since beginning of last month:
    • Site-wide: 6,787 out of 62,725

Genome variation and meiotic recombination in Plasmodium falciparum: insights from deep sequencing of genetic crosses

genomics more details view paper
  • Downloaded 3,450 times
  • Download rankings, all-time:
    • Site-wide: 829 out of 62,725
    • In genomics: 213 out of 4,314
  • Year to date:
    • Site-wide: 41,758 out of 62,725
  • Since beginning of last month:
    • Site-wide: 29,514 out of 62,725

Improved genome inference in the MHC using a population reference graph

genomics more details view paper
  • Downloaded 3,230 times
  • Download rankings, all-time:
    • Site-wide: 932 out of 62,725
    • In genomics: 239 out of 4,314
  • Year to date:
    • Site-wide: 45,339 out of 62,725
  • Since beginning of last month:
    • Site-wide: 53,049 out of 62,725

Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis.

genomics more details view paper
  • Downloaded 3,120 times
  • Download rankings, all-time:
    • Site-wide: 997 out of 62,725
    • In genomics: 246 out of 4,314
  • Year to date:
    • Site-wide: 46,680 out of 62,725
  • Since beginning of last month:
    • Site-wide: 32,386 out of 62,725

A reference dataset of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree

bioinformatics more details view paper
  • Downloaded 2,657 times
  • Download rankings, all-time:
    • Site-wide: 1,342 out of 62,725
    • In bioinformatics: 273 out of 6,249
  • Year to date:
    • Site-wide: 27,273 out of 62,725
  • Since beginning of last month:
    • Site-wide: 36,227 out of 62,725

Dating genomic variants and shared ancestry in population-scale sequencing data

genomics more details view paper
  • Downloaded 2,529 times
  • Download rankings, all-time:
    • Site-wide: 1,449 out of 62,725
    • In genomics: 331 out of 4,314
  • Year to date:
    • Site-wide: 1,176 out of 62,725
  • Since beginning of last month:
    • Site-wide: 715 out of 62,725

Inferring the ancestry of everyone

evolutionary biology more details view paper
  • Downloaded 2,414 times
  • Download rankings, all-time:
    • Site-wide: 1,602 out of 62,725
    • In evolutionary biology: 69 out of 4,228
  • Year to date:
    • Site-wide: 888 out of 62,725
  • Since beginning of last month:
    • Site-wide: 2,490 out of 62,725

A natural encoding of genetic variation in a Burrows-Wheeler Transform to enable mapping and genome inference

bioinformatics more details view paper
  • Downloaded 2,051 times
  • Download rankings, all-time:
    • Site-wide: 2,127 out of 62,725
    • In bioinformatics: 439 out of 6,249
  • Year to date:
    • Site-wide: 25,034 out of 62,725
  • Since beginning of last month:
    • Site-wide: 40,226 out of 62,725

Practical Use of Methods for Imputation of HLA Alleles from SNP Genotype Data

genetics more details view paper
  • Downloaded 1,926 times
  • Download rankings, all-time:
    • Site-wide: 2,389 out of 62,725
    • In genetics: 227 out of 3,562
  • Year to date:
    • Site-wide: 6,309 out of 62,725
  • Since beginning of last month:
    • Site-wide: 7,171 out of 62,725

Bayesian analysis of genetic association across tree-structured routine healthcare data in the UK Biobank

genetics more details view paper
  • Downloaded 1,499 times
  • Download rankings, all-time:
    • Site-wide: 3,637 out of 62,725
    • In genetics: 319 out of 3,562
  • Year to date:
    • Site-wide: 34,652 out of 62,725
  • Since beginning of last month:
    • Site-wide: 46,312 out of 62,725

Systematic classification of shared components of genetic risk for common human diseases

genetics more details view paper
  • Downloaded 1,154 times
  • Download rankings, all-time:
    • Site-wide: 5,591 out of 62,725
    • In genetics: 450 out of 3,562
  • Year to date:
    • Site-wide: 10,034 out of 62,725
  • Since beginning of last month:
    • Site-wide: 11,859 out of 62,725

Integrating long-range connectivity information into de Bruijn graphs

bioinformatics more details view paper
  • Downloaded 1,145 times
  • Download rankings, all-time:
    • Site-wide: 5,676 out of 62,725
    • In bioinformatics: 1,089 out of 6,249
  • Year to date:
    • Site-wide: 25,185 out of 62,725
  • Since beginning of last month:
    • Site-wide: 35,332 out of 62,725

Stable recombination hotspots in birds

evolutionary biology more details view paper
  • Downloaded 969 times
  • Download rankings, all-time:
    • Site-wide: 7,420 out of 62,725
    • In evolutionary biology: 463 out of 4,228
  • Year to date:
    • Site-wide: 55,418 out of 62,725
  • Since beginning of last month:
    • Site-wide: 59,157 out of 62,725

Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data

bioinformatics more details view paper
  • Downloaded 762 times
  • Download rankings, all-time:
    • Site-wide: 10,780 out of 62,725
    • In bioinformatics: 1,843 out of 6,249
  • Year to date:
    • Site-wide: 22,735 out of 62,725
  • Since beginning of last month:
    • Site-wide: 13,907 out of 62,725

The origins and relatedness structure of mixed infections vary with local prevalence of P. falciparum malaria

epidemiology more details view paper
  • Downloaded 586 times
  • Download rankings, all-time:
    • Site-wide: 15,590 out of 62,725
    • In epidemiology: 174 out of 1,556
  • Year to date:
    • Site-wide: 11,851 out of 62,725
  • Since beginning of last month:
    • Site-wide: 33,188 out of 62,725

HLA*PRG:LA - HLA typing from linearly projected graph alignments

bioinformatics more details view paper
  • Downloaded 571 times
  • Download rankings, all-time:
    • Site-wide: 16,114 out of 62,725
    • In bioinformatics: 2,511 out of 6,249
  • Year to date:
    • Site-wide: 13,352 out of 62,725
  • Since beginning of last month:
    • Site-wide: 23,001 out of 62,725

Coupling Wright-Fisher and coalescent dynamics for realistic simulation of population-scale datasets

evolutionary biology more details view paper
  • Downloaded 503 times
  • Download rankings, all-time:
    • Site-wide: 19,033 out of 62,725
    • In evolutionary biology: 1,408 out of 4,228
  • Year to date:
    • Site-wide: 4,848 out of 62,725
  • Since beginning of last month:
    • Site-wide: 9,889 out of 62,725

Mapping the drivers of within-host pathogen evolution using massive data sets

genetics more details view paper
  • Downloaded 474 times
  • Download rankings, all-time:
    • Site-wide: 20,408 out of 62,725
    • In genetics: 1,371 out of 3,562
  • Year to date:
    • Site-wide: 52,870 out of 62,725
  • Since beginning of last month:
    • Site-wide: 47,073 out of 62,725

Detection of simple and complex de novo mutations without, with, or with multiple reference sequences

bioinformatics more details view paper
  • Downloaded 275 times
  • Download rankings, all-time:
    • Site-wide: 35,299 out of 62,725
    • In bioinformatics: 4,374 out of 6,249
  • Year to date:
    • Site-wide: 12,837 out of 62,725
  • Since beginning of last month:
    • Site-wide: 11,680 out of 62,725

Selfish mutations dysregulating RAS-MAPK signaling are pervasive in aged human testes

genetics more details view paper
  • Downloaded 225 times
  • Download rankings, all-time:
    • Site-wide: 40,951 out of 62,725
    • In genetics: 2,474 out of 3,562
  • Year to date:
    • Site-wide: 52,902 out of 62,725
  • Since beginning of last month:
    • Site-wide: 37,044 out of 62,725

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