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Author: Abhyudai Singh

Rankings

  • All-time downloads: 18,903 (rank: 3,548 out of 424,856)
  • Categories:
    • biophysics: 894 (rank: 4,046 (tie) out of 17,993)
    • cell biology: 457 (rank: 14,972 (tie) out of 32,588)
    • ecology: 227 (rank: 12,350 (tie) out of 18,521)
    • evolutionary biology: 104 (rank: 20,350 (tie) out of 21,586)
    • genomics: 288 (rank: 37,283 (tie) out of 44,315)
    • microbiology: 559 (rank: 17,893 (tie) out of 50,033)
    • molecular biology: 731 (rank: 5,981 (tie) out of 23,134)
    • neuroscience: 790 (rank: 22,716 (tie) out of 71,751)
    • synthetic biology: 373 (rank: 3,485 (tie) out of 4,408)
    • systems biology: 14,480 (rank: 158 out of 12,359)

Downloads per author, site-wide

Preprints

Transcription coordinates histone amounts and genome content

molecular biology more details view paper

No bioRxiv download data for this paper yet.

Memory sequencing reveals heritable single cell gene expression programs associated with distinct cellular behaviors

systems biology more details view paper
  • Downloaded 4,441 times
  • Download rankings, all-time:
    • Site-wide: 1,036 out of 100,591
    • In systems biology: 25 out of 2,556
  • Year to date:
    • Site-wide: 1,646 out of 100,591
  • Since beginning of last month:
    • Site-wide: 2,612 out of 100,591

Gene networks with transcriptional bursting recapitulate rare transient coordinated expression states in cancer

systems biology more details view paper
  • Downloaded 1,098 times
  • Download rankings, all-time:
    • Site-wide: 11,050 out of 100,591
    • In systems biology: 296 out of 2,556
  • Year to date:
    • Site-wide: 19,127 out of 100,591
  • Since beginning of last month:
    • Site-wide: 21,044 out of 100,591

Controlling noise in the timing of intracellular events: A first-passage time approach

biophysics more details view paper
  • Downloaded 714 times
  • Download rankings, all-time:
    • Site-wide: 21,608 out of 100,591
    • In biophysics: 774 out of 4,425
  • Year to date:
    • Site-wide: 77,462 out of 100,591
  • Since beginning of last month:
    • Site-wide: 46,268 out of 100,591

Transcriptional bursting explains the noise-versus-mean relationship in mRNA and protein levels

systems biology more details view paper
  • Downloaded 630 times
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    • Site-wide: 25,955 out of 100,591
    • In systems biology: 724 out of 2,556
  • Year to date:
    • Site-wide: 82,924 out of 100,591
  • Since beginning of last month:
    • Site-wide: 46,855 out of 100,591

A mechanistic first-passage time framework for bacterial cell-division timing

systems biology more details view paper
  • Downloaded 563 times
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    • Site-wide: 30,124 out of 100,591
    • In systems biology: 835 out of 2,556
  • Year to date:
    • Site-wide: 69,963 out of 100,591
  • Since beginning of last month:
    • Site-wide: 29,894 out of 100,591

Modeling noise mechanisms in neuronal synaptic transmission

neuroscience more details view paper
  • Downloaded 552 times
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    • Site-wide: 30,861 out of 100,591
    • In neuroscience: 5,197 out of 17,896
  • Year to date:
    • Site-wide: 77,459 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Analysis of noise mechanisms in cell size control

systems biology more details view paper
  • Downloaded 513 times
  • Download rankings, all-time:
    • Site-wide: 33,880 out of 100,591
    • In systems biology: 950 out of 2,556
  • Year to date:
    • Site-wide: 86,828 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

High Cooperativity In Negative Feedback Can Amplify Noisy Gene Expression

systems biology more details view paper
  • Downloaded 499 times
  • Download rankings, all-time:
    • Site-wide: 35,046 out of 100,591
    • In systems biology: 975 out of 2,556
  • Year to date:
    • Site-wide: 82,916 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Some remarks on moments for stochastic chemical kinetics

systems biology more details view paper
  • Downloaded 497 times
  • Download rankings, all-time:
    • Site-wide: 35,210 out of 100,591
    • In systems biology: 979 out of 2,556
  • Year to date:
    • Site-wide: 86,045 out of 100,591
  • Since beginning of last month:
    • Site-wide: 36,423 out of 100,591

Hybrid systems approach to modeling stochastic dynamics of cell size

systems biology more details view paper
  • Downloaded 488 times
  • Download rankings, all-time:
    • Site-wide: 36,020 out of 100,591
    • In systems biology: 1,004 out of 2,556
  • Year to date:
    • Site-wide: 95,769 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Optimal feedback mechanisms for regulating cell numbers

systems biology more details view paper
  • Downloaded 459 times
  • Download rankings, all-time:
    • Site-wide: 38,817 out of 100,591
    • In systems biology: 1,096 out of 2,556
  • Year to date:
    • Site-wide: 60,447 out of 100,591
  • Since beginning of last month:
    • Site-wide: 26,484 out of 100,591

Noise suppression in cell-size control

systems biology more details view paper
  • Downloaded 453 times
  • Download rankings, all-time:
    • Site-wide: 39,393 out of 100,591
    • In systems biology: 1,114 out of 2,556
  • Year to date:
    • Site-wide: 96,369 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Buffering gene expression noise by microRNA based feedforward regulation

systems biology more details view paper
  • Downloaded 453 times
  • Download rankings, all-time:
    • Site-wide: 39,391 out of 100,591
    • In systems biology: 1,115 out of 2,556
  • Year to date:
    • Site-wide: 71,848 out of 100,591
  • Since beginning of last month:
    • Site-wide: 41,121 out of 100,591

Stochastic Analysis Of An Incoherent Feedforward Genetic Motif

molecular biology more details view paper
  • Downloaded 413 times
  • Download rankings, all-time:
    • Site-wide: 43,638 out of 100,591
    • In molecular biology: 1,390 out of 3,484
  • Year to date:
    • Site-wide: 81,191 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Extrinsic Noise Suppression in Micro RNA Mediated Incoherent Feedforward Loops

systems biology more details view paper
  • Downloaded 389 times
  • Download rankings, all-time:
    • Site-wide: 46,587 out of 100,591
    • In systems biology: 1,337 out of 2,556
  • Year to date:
    • Site-wide: 82,252 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

An approximate derivate-based controller for regulating gene expression

synthetic biology more details view paper
  • Downloaded 373 times
  • Download rankings, all-time:
    • Site-wide: 48,498 out of 100,591
    • In synthetic biology: 670 out of 917
  • Year to date:
    • Site-wide: 74,086 out of 100,591
  • Since beginning of last month:
    • Site-wide: 39,322 out of 100,591

Subcellular localization of the J-protein Sis1 regulates the heat shock response

cell biology more details view paper
  • Downloaded 370 times
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    • Site-wide: 48,850 out of 100,591
    • In cell biology: 2,451 out of 5,209
  • Year to date:
    • Site-wide: 10,493 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Enhancement of gene expression noise due to nonspecific transcription factor binding

systems biology more details view paper
  • Downloaded 340 times
  • Download rankings, all-time:
    • Site-wide: 53,030 out of 100,591
    • In systems biology: 1,527 out of 2,556
  • Year to date:
    • Site-wide: 20,380 out of 100,591
  • Since beginning of last month:
    • Site-wide: 35,405 out of 100,591

Cell volume homeostatically controls the rDNA repeat copy number and rRNA synthesis rate in yeast

molecular biology more details view paper
  • Downloaded 318 times
  • Download rankings, all-time:
    • Site-wide: 56,156 out of 100,591
    • In molecular biology: 1,831 out of 3,484
  • Year to date:
    • Site-wide: 36,218 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Cell-cycle coupled expression minimizes random fluctuations in gene product levels

systems biology more details view paper
  • Downloaded 307 times
  • Download rankings, all-time:
    • Site-wide: 57,886 out of 100,591
    • In systems biology: 1,661 out of 2,556
  • Year to date:
    • Site-wide: 94,950 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Autoregulation of pre-mRNA processing for buffering noisy gene expression

systems biology more details view paper
  • Downloaded 305 times
  • Download rankings, all-time:
    • Site-wide: 58,144 out of 100,591
    • In systems biology: 1,673 out of 2,556
  • Year to date:
    • Site-wide: 52,687 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Kinetics of HTLV-1 reactivation from latency quantified by single-molecule RNA FISH and stochastic modelling

microbiology more details view paper
  • Downloaded 304 times
  • Download rankings, all-time:
    • Site-wide: 58,333 out of 100,591
    • In microbiology: 4,411 out of 8,907
  • Year to date:
    • Site-wide: 70,519 out of 100,591
  • Since beginning of last month:
    • Site-wide: 36,581 out of 100,591

Controlling noisy expression through auto regulation of burst frequency and protein stability

systems biology more details view paper
  • Downloaded 290 times
  • Download rankings, all-time:
    • Site-wide: 60,490 out of 100,591
    • In systems biology: 1,743 out of 2,556
  • Year to date:
    • Site-wide: 94,727 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Cell volume distributions in exponentially growing populations

systems biology more details view paper
  • Downloaded 286 times
  • Download rankings, all-time:
    • Site-wide: 61,183 out of 100,591
    • In systems biology: 1,761 out of 2,556
  • Year to date:
    • Site-wide: 84,093 out of 100,591
  • Since beginning of last month:
    • Site-wide: 36,092 out of 100,591

Noise induced bimodality in genetic circuits with monostable positive feedback

systems biology more details view paper
  • Downloaded 280 times
  • Download rankings, all-time:
    • Site-wide: 62,117 out of 100,591
    • In systems biology: 1,782 out of 2,556
  • Year to date:
    • Site-wide: 94,160 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Analysis of stochastic timing of intracellular events with gene switching

systems biology more details view paper
  • Downloaded 258 times
  • Download rankings, all-time:
    • Site-wide: 65,862 out of 100,591
    • In systems biology: 1,865 out of 2,556
  • Year to date:
    • Site-wide: 62,457 out of 100,591
  • Since beginning of last month:
    • Site-wide: 43,645 out of 100,591

Channel Capacity Computations for Unregulated and Autoregulated Gene Expression

systems biology more details view paper
  • Downloaded 255 times
  • Download rankings, all-time:
    • Site-wide: 66,384 out of 100,591
    • In systems biology: 1,883 out of 2,556
  • Year to date:
    • Site-wide: 54,117 out of 100,591
  • Since beginning of last month:
    • Site-wide: 25,264 out of 100,591

Synaptic transmission may provide an evolutionary benefit to HIV through modulation of latency

microbiology more details view paper
  • Downloaded 255 times
  • Download rankings, all-time:
    • Site-wide: 66,293 out of 100,591
    • In microbiology: 5,178 out of 8,907
  • Year to date:
    • Site-wide: 94,644 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Joint regulation of growth and division timing drives size homeostasis in proliferating animal cells

systems biology more details view paper
  • Downloaded 249 times
  • Download rankings, all-time:
    • Site-wide: 67,465 out of 100,591
    • In systems biology: 1,913 out of 2,556
  • Year to date:
    • Site-wide: 98,183 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Characterizing neuronal synaptic transmission using stochastic hybrid systems

neuroscience more details view paper
  • Downloaded 238 times
  • Download rankings, all-time:
    • Site-wide: 69,390 out of 100,591
    • In neuroscience: 12,331 out of 17,896
  • Year to date:
    • Site-wide: 71,128 out of 100,591
  • Since beginning of last month:
    • Site-wide: 48,163 out of 100,591

Stochastic delays suppress noise in a genetic circuit with negative feedback

systems biology more details view paper
  • Downloaded 215 times
  • Download rankings, all-time:
    • Site-wide: 73,421 out of 100,591
    • In systems biology: 2,059 out of 2,556
  • Year to date:
    • Site-wide: 83,814 out of 100,591
  • Since beginning of last month:
    • Site-wide: 42,674 out of 100,591

Noise Analysis in Biochemical Complex Formation

systems biology more details view paper
  • Downloaded 208 times
  • Download rankings, all-time:
    • Site-wide: 74,762 out of 100,591
    • In systems biology: 2,091 out of 2,556
  • Year to date:
    • Site-wide: 85,727 out of 100,591
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    • Site-wide: None out of 100,591

Optimal bang--bang feedback for bursty gene expression

systems biology more details view paper
  • Downloaded 205 times
  • Download rankings, all-time:
    • Site-wide: 75,288 out of 100,591
    • In systems biology: 2,098 out of 2,556
  • Year to date:
    • Site-wide: 81,821 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Mixture distributions in a stochastic gene expression model with delayed feedback

systems biology more details view paper
  • Downloaded 183 times
  • Download rankings, all-time:
    • Site-wide: 79,210 out of 100,591
    • In systems biology: 2,171 out of 2,556
  • Year to date:
    • Site-wide: 66,909 out of 100,591
  • Since beginning of last month:
    • Site-wide: 35,358 out of 100,591

Optimum Threshold Minimizes Noise in Timing of Intracellular Events

biophysics more details view paper
  • Downloaded 180 times
  • Download rankings, all-time:
    • Site-wide: 79,705 out of 100,591
    • In biophysics: 3,474 out of 4,425
  • Year to date:
    • Site-wide: 29,239 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Cell size statistics in cell lineages and population snapshots with different growth regimes and division strategies.

systems biology more details view paper
  • Downloaded 169 times
  • Download rankings, all-time:
    • Site-wide: 81,467 out of 100,591
    • In systems biology: 2,226 out of 2,556
  • Year to date:
    • Site-wide: 31,732 out of 100,591
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    • Site-wide: None out of 100,591

The role of incoherent feedforward circuits in regulating precision of event timing

systems biology more details view paper
  • Downloaded 155 times
  • Download rankings, all-time:
    • Site-wide: 83,858 out of 100,591
    • In systems biology: 2,263 out of 2,556
  • Year to date:
    • Site-wide: 35,216 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Identifying Mechanisms of Regulation to Model Carbon Flux During Heat Stress And Generate Testable Hypotheses

genomics more details view paper
  • Downloaded 147 times
  • Download rankings, all-time:
    • Site-wide: 85,131 out of 100,591
    • In genomics: 5,659 out of 6,229
  • Year to date:
    • Site-wide: 92,820 out of 100,591
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    • Site-wide: None out of 100,591

Stationary distributions and metastable behaviour for self-regulating proteins with general lifetime distributions

systems biology more details view paper
  • Downloaded 147 times
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    • Site-wide: 85,101 out of 100,591
    • In systems biology: 2,284 out of 2,556
  • Year to date:
    • Site-wide: 37,525 out of 100,591
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    • Site-wide: None out of 100,591

Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration

genomics more details view paper
  • Downloaded 141 times
  • Download rankings, all-time:
    • Site-wide: 85,914 out of 100,591
    • In genomics: 5,701 out of 6,229
  • Year to date:
    • Site-wide: 39,441 out of 100,591
  • Since beginning of last month:
    • Site-wide: 9,456 out of 100,591

Noise propagation in gene expression in the presence of decoys

systems biology more details view paper
  • Downloaded 135 times
  • Download rankings, all-time:
    • Site-wide: 86,793 out of 100,591
    • In systems biology: 2,307 out of 2,556
  • Year to date:
    • Site-wide: 41,543 out of 100,591
  • Since beginning of last month:
    • Site-wide: 23,261 out of 100,591

Hybrid systems modeling of ecological population dynamics

ecology more details view paper
  • Downloaded 129 times
  • Download rankings, all-time:
    • Site-wide: 87,593 out of 100,591
    • In ecology: 3,558 out of 4,406
  • Year to date:
    • Site-wide: 43,692 out of 100,591
  • Since beginning of last month:
    • Site-wide: 27,577 out of 100,591

An optimal lysis time maximizes bacteriophage fitness in quasi-continuous culture

evolutionary biology more details view paper
  • Downloaded 104 times
  • Download rankings, all-time:
    • Site-wide: 90,719 out of 100,591
    • In evolutionary biology: 5,537 out of 5,999
  • Year to date:
    • Site-wide: 54,452 out of 100,591
  • Since beginning of last month:
    • Site-wide: 36,662 out of 100,591

Global redistribution and local migration in semi-discrete host-parasitoid population dynamic models.

ecology more details view paper
  • Downloaded 98 times
  • Download rankings, all-time:
    • Site-wide: 91,429 out of 100,591
    • In ecology: 3,815 out of 4,406
  • Year to date:
    • Site-wide: 78,244 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

A transient heritable memory regulates HIV reactivation from latency

cell biology more details view paper
  • Downloaded 87 times
  • Download rankings, all-time:
    • Site-wide: 92,733 out of 100,591
    • In cell biology: 4,784 out of 5,209
  • Year to date:
    • Site-wide: 64,166 out of 100,591
  • Since beginning of last month:
    • Site-wide: None out of 100,591

Division stochasticity can be transmitted to protein expression through chromosome replication

systems biology more details view paper
  • Downloaded 7 times
  • Download rankings, all-time:
    • Site-wide: 98,487 out of 100,591
    • In systems biology: 2,519 out of 2,556
  • Year to date:
    • Site-wide: 98,465 out of 100,591
  • Since beginning of last month:
    • Site-wide: 42,705 out of 100,591

Role of intercellular coupling and delay on the synchronization of genetic oscillators

systems biology more details view paper
  • Downloaded 3 times
  • Download rankings, all-time:
    • Site-wide: 98,935 out of 100,591
    • In systems biology: 2,528 out of 2,556
  • Year to date:
    • Site-wide: 98,793 out of 100,591
  • Since beginning of last month:
    • Site-wide: 48,062 out of 100,591

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