Author: Emmanuel Barillot

Downloads per author, site-wide

Preprints

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

• Downloaded 1,816 times
• Download rankings, all-time:
  • Site-wide: 7,530
  • In systems biology: 136
• Year to date:
  • Site-wide: 3,473
• Since beginning of last month:
  • Site-wide: 1,900

Transcriptional programs define intratumoral heterogeneity of Ewing sarcoma at single cell resolution

• Downloaded 848 times
• Download rankings, all-time:
  • Site-wide: 23,547
  • In cancer biology: 588
• Year to date:
  • Site-wide: 26,723
• Since beginning of last month:
  • Site-wide: 80,697

Determining the optimal number of independent components for reproducible transcriptomic data analysis

• Downloaded 819 times
• Download rankings, all-time:
  • Site-wide: 24,726
  • In bioinformatics: 2,989
• Year to date:
  • Site-wide: 33,317
• Since beginning of last month:
  • Site-wide: 47,027

Clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction

• Downloaded 796 times
• Download rankings, all-time:
  • Site-wide: 25,704
  • In cancer biology: 663
• Year to date:
  • Site-wide: 89,293
• Since beginning of last month:
  • Site-wide: 96,273

PhysiBoSS: a multi-scale agent based modelling framework integrating physical dimension and cell signalling

• Downloaded 743 times
• Download rankings, all-time:
  • Site-wide: 28,323
  • In systems biology: 646
• Year to date:
  • Site-wide: 97,735
• Since beginning of last month:
  • Site-wide: 45,157

Predicting genetic interactions from Boolean models of biological networks

• Downloaded 662 times
• Download rankings, all-time:
  • Site-wide: 33,123
  • In genetics: 1,656
• Year to date:
  • Site-wide: 84,892
• Since beginning of last month:
  • Site-wide: 94,565

Differential epigenetic landscapes and transcription factors explain X-linked gene behaviours during X-chromosome reactivation in the mouse inner cell mass

• Downloaded 587 times
• Download rankings, all-time:
  • Site-wide: 38,668
  • In developmental biology: 895
• Year to date:
  • Site-wide: 98,742
• Since beginning of last month:
  • Site-wide: 91,787

Calculating biological module enrichment or depletion and visualizing data on large-scale molecular maps with ACSNMineR and RNaviCell R packages

• Downloaded 564 times
• Download rankings, all-time:
  • Site-wide: 40,659
  • In bioinformatics: 4,452
• Year to date:
  • Site-wide: 68,912
• Since beginning of last month:
  • Site-wide: 74,915

Identification of microRNA clusters cooperatively acting on Epithelial to Mesenchymal Transition in Triple Negative Breast Cancer

• Downloaded 466 times
• Download rankings, all-time:
  • Site-wide: 50,979
  • In systems biology: 1,251
• Year to date:
  • Site-wide: 103,451
• Since beginning of last month:
  • Site-wide: 91,056

Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network

• Downloaded 317 times
• Download rankings, all-time:
  • Site-wide: 73,458
  • In systems biology: 1,810
• Year to date:
  • Site-wide: 49,218
• Since beginning of last month:
  • Site-wide: 113,923

Exact calculation of stationary solution and parameter sensitivity analysis of stochastic continuous time Boolean models

• Downloaded 245 times
• Download rankings, all-time:
  • Site-wide: 87,996
  • In systems biology: 2,113
• Year to date:
  • Site-wide: 63,314
• Since beginning of last month:
  • Site-wide: 112,141

Personalized logical models to investigate cancer response to BRAF treatments in melanomas and colorectal cancers

• Downloaded 240 times
• Download rankings, all-time:
  • Site-wide: 88,879
  • In systems biology: 2,131
• Year to date:
  • Site-wide: 48,551
• Since beginning of last month:
  • Site-wide: 42,014

UPMaBoSS: a novel framework for dynamic cell population modeling.

• Downloaded 121 times
• Download rankings, all-time:
  • Site-wide: 112,426
  • In bioinformatics: 9,298
• Year to date:
  • Site-wide: 58,401
• Since beginning of last month:
  • Site-wide: 85,194