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Author: Adam P Arkin

Rankings

  • All-time downloads: 26,866 (rank: 1,180 out of 333,542)
  • Categories:
    • bioengineering: 954 (rank: 1,580 (tie) out of 8,986)
    • bioinformatics: 2,874 (rank: 2,940 out of 28,738)
    • clinical trials: 2,120 (rank: 78 (tie) out of 1,036)
    • ecology: 200 (rank: 10,013 (tie) out of 14,026)
    • genetics: 935 (rank: 12,216 (tie) out of 32,371)
    • genomics: 1,050 (rank: 14,721 (tie) out of 36,844)
    • microbiology: 7,221 (rank: 369 out of 35,350)
    • synthetic biology: 7,389 (rank: 54 out of 3,400)
    • systems biology: 4,123 (rank: 450 out of 10,097)

Downloads per author, site-wide

Preprints

Multiplexed CRISPR-Cas9 based genome editing of Rhodosporidium toruloides

synthetic biology more details view paper
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    • Site-wide: 50,148 out of 76,880

Deep Annotation of Protein Function across Diverse Bacteria from Mutant Phenotypes

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    • In microbiology: 96 out of 6,357
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Selection of chromosomal DNA libraries using a multiplex CRISPR system in Saccharomyces cerevisiae

synthetic biology more details view paper
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    • In synthetic biology: 44 out of 730
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An interventional Soylent diet increases the Bacteroidetes to Firmicutes ratio in human gut microbiome communities: a randomized controlled trial

clinical trials more details view paper
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    • In clinical trials: 8 out of 99
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    • Site-wide: 16,517 out of 76,880

The DOE Systems Biology Knowledgebase (KBase)

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    • In bioinformatics: 914 out of 7,428
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    • Site-wide: 23,155 out of 76,880

A Comparison of the Costs and Benefits of Bacterial Gene Expression

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    • In systems biology: 124 out of 2,079
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Deciphering microbial interactions in synthetic human gut microbiome communities

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    • In systems biology: 180 out of 2,079
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Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides

systems biology more details view paper
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    • In systems biology: 266 out of 2,079
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    • Site-wide: 46,581 out of 76,880

High-throughput mapping of the phage resistance landscape in E. coli

microbiology more details view paper
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    • In microbiology: 479 out of 6,357
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    • Site-wide: 310 out of 76,880
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    • Site-wide: 197 out of 76,880

Large-scale chemical-genetics of the human gut bacterium Bacteroides thetaiotaomicron

microbiology more details view paper
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    • In microbiology: 490 out of 6,357
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    • Site-wide: 5,395 out of 76,880
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    • Site-wide: 5,880 out of 76,880

The genetic basis of energy conservation in the sulfate-reducing bacterium Desulfovibrio alaskensis G20

genetics more details view paper
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    • In genetics: 734 out of 4,151
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    • Site-wide: 41,944 out of 76,880

Massively parallel fitness profiling reveals multiple novel enzymes in Pseudomonas putida lysine metabolism

microbiology more details view paper
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    • In microbiology: 766 out of 6,357
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    • Site-wide: 34,894 out of 76,880
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    • Site-wide: 32,971 out of 76,880

A versatile platform strain for high-fidelity multiplex genome editing

synthetic biology more details view paper
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    • In synthetic biology: 290 out of 730
  • Year to date:
    • Site-wide: 61,680 out of 76,880
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    • Site-wide: 59,948 out of 76,880

Programming mRNA decay to modulate synthetic circuit resource allocation

synthetic biology more details view paper
  • Downloaded 641 times
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    • Site-wide: 18,311 out of 76,880
    • In synthetic biology: 306 out of 730
  • Year to date:
    • Site-wide: 63,628 out of 76,880
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    • Site-wide: 61,364 out of 76,880

Dub-seq: dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits

microbiology more details view paper
  • Downloaded 636 times
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    • Site-wide: 18,554 out of 76,880
    • In microbiology: 1,002 out of 6,357
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    • Site-wide: 50,856 out of 76,880
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    • Site-wide: 42,649 out of 76,880

Massive Factorial Design Untangles Coding Sequences Determinants Of Translation Efficacy

synthetic biology more details view paper
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    • In synthetic biology: 341 out of 730
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    • Site-wide: 63,176 out of 76,880
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    • Site-wide: 75,193 out of 76,880

Magic pools: parallel assessment of transposon delivery vectors in bacteria

genomics more details view paper
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    • In genomics: 2,481 out of 5,050
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    • Site-wide: 73,405 out of 76,880

Transposon insertional mutagenesis in Saccharomyces uvarum reveals trans-acting effects influencing species dependent essential genes

genomics more details view paper
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    • In genomics: 2,796 out of 5,050
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    • Site-wide: 52,049 out of 76,880

Rhodosporidium toruloides: A new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts

bioengineering more details view paper
  • Downloaded 478 times
  • Download rankings, all-time:
    • Site-wide: 27,079 out of 76,880
    • In bioengineering: 502 out of 1,627
  • Year to date:
    • Site-wide: 64,847 out of 76,880
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    • Site-wide: 72,928 out of 76,880

QTL-guided metabolic engineering of a complex trait

bioengineering more details view paper
  • Downloaded 476 times
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    • In bioengineering: 504 out of 1,627
  • Year to date:
    • Site-wide: 56,103 out of 76,880
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    • Site-wide: 55,357 out of 76,880

PaperBLAST: Text-mining papers for information about homologs

bioinformatics more details view paper
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    • In bioinformatics: 3,743 out of 7,428
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    • Site-wide: 74,572 out of 76,880

Massive Phenotypic Measurements Reveal Complex Physiological Consequences Of Differential Translation Efficacies

synthetic biology more details view paper
  • Downloaded 456 times
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    • Site-wide: 28,597 out of 76,880
    • In synthetic biology: 443 out of 730
  • Year to date:
    • Site-wide: 72,742 out of 76,880
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    • Site-wide: 75,419 out of 76,880

Kluyveromyces marxianus as a robust synthetic biology platform host

synthetic biology more details view paper
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    • Site-wide: 30,044 out of 76,880
    • In synthetic biology: 461 out of 730
  • Year to date:
    • Site-wide: 64,222 out of 76,880
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    • Site-wide: 65,069 out of 76,880

A method for achieving complete microbial genomes and better quality bins from metagenomics data

bioinformatics more details view paper
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    • In bioinformatics: 4,208 out of 7,428
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    • Site-wide: 716 out of 76,880

Validating Regulatory Predictions from Diverse Bacteria with Mutant Fitness Data

microbiology more details view paper
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    • In microbiology: 2,250 out of 6,357
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    • Site-wide: 65,116 out of 76,880

Filling Gaps in Bacterial Amino Acid Biosynthesis Pathways with High-throughput Genetics

microbiology more details view paper
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    • In microbiology: 2,297 out of 6,357
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    • Site-wide: 60,911 out of 76,880

Oxidative pathways of deoxyribose and deoxyribonate catabolism

microbiology more details view paper
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    • In microbiology: 2,339 out of 6,357
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    • Site-wide: 23,038 out of 76,880

Curated BLAST for Genomes

bioinformatics more details view paper
  • Downloaded 309 times
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    • In bioinformatics: 5,048 out of 7,428
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    • Site-wide: 66,545 out of 76,880

Genome-wide and enzymatic analysis reveals efficient D-galacturonic acid metabolism in the basidiomycete yeast Rhodosporidium toruloides

systems biology more details view paper
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    • Site-wide: 43,528 out of 76,880
    • In systems biology: 1,316 out of 2,079
  • Year to date:
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    • Site-wide: 45,805 out of 76,880

Selective carbon sources influence the end-products of microbial nitrate respiration

microbiology more details view paper
  • Downloaded 220 times
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    • In microbiology: 4,016 out of 6,357
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    • Site-wide: 18,470 out of 76,880

GapMind: Automated annotation of amino acid biosynthesis

bioinformatics more details view paper
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    • In bioinformatics: 6,056 out of 7,428
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    • Site-wide: 26,832 out of 76,880

Systematic genome-wide querying of coding and non-coding functional elements in E. coli using CRISPRi

microbiology more details view paper
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    • Site-wide: 57,506 out of 76,880
    • In microbiology: 4,248 out of 6,357
  • Year to date:
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  • Since beginning of last month:
    • Site-wide: 2,203 out of 76,880

A quantitative framework reveals the ecological drivers of grassland soil microbial community assembly in response to warming

ecology more details view paper
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    • In ecology: 2,135 out of 3,357
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Defining the toxicity limits on microbial range in a metal-contaminated aquifer

microbiology more details view paper
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    • In microbiology: 4,495 out of 6,357
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Integrated characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer

systems biology more details view paper
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