Author: Nir Hacohen

ORCiD: http://orcid.org/0000-0002-2349-2656
Most recently observed institution: Broad Institute of MIT and Harvard

Rankings

All-time downloads: 46,793 (rank: 519 out of 336,397)
Categories:
- bioengineering: 1,862 (rank: 625 out of 9,122)
- bioinformatics: 1,385 (rank: 6,963 (tie) out of 28,939)
- cancer biology: 1,412 (rank: 2,378 (tie) out of 22,520)
- cell biology: 11,974 (rank: 166 (tie) out of 24,060)
- genomics: 17,233 (rank: 463 out of 37,036)
- immunology: 12,737 (rank: 36 (tie) out of 16,739)
- physiology: 190 (rank: 4,280 (tie) out of 6,712)

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Preprints

The Human Cell Atlas

cell biology more details view paper

Downloaded 11,974 times
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- Site-wide: 120 out of 77,613
- In cell biology: 3 out of 3,859
Year to date:
- Site-wide: 7,906 out of 77,613
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- Site-wide: 9,012 out of 77,613

Systematic comparative analysis of single cell RNA-sequencing methods

genomics more details view paper

Downloaded 9,767 times
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- Site-wide: 174 out of 77,613
- In genomics: 43 out of 5,088
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- Site-wide: 207 out of 77,613
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- Site-wide: 409 out of 77,613

A protocol for single-cell transcriptomics from cryopreserved renal tissue and urine for the Accelerating Medicine Partnership (AMP) RA/SLE network

immunology more details view paper

Downloaded 4,460 times
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- Site-wide: 700 out of 77,613
- In immunology: 9 out of 2,088
Year to date:
- Site-wide: 889 out of 77,613
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- Site-wide: 1,062 out of 77,613

Defining Inflammatory Cell States in Rheumatoid Arthritis Joint Synovial Tissues by Integrating Single-cell Transcriptomics and Mass Cytometry

immunology more details view paper

Downloaded 3,881 times
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- Site-wide: 912 out of 77,613
- In immunology: 12 out of 2,088
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- Site-wide: 4,810 out of 77,613
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Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

genomics more details view paper

Downloaded 2,063 times
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- Site-wide: 2,798 out of 77,613
- In genomics: 550 out of 5,088
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- Site-wide: 20,410 out of 77,613
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Landscape of X chromosome inactivation across human tissues

genomics more details view paper

Downloaded 1,898 times
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- Site-wide: 3,218 out of 77,613
- In genomics: 610 out of 5,088
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- Site-wide: 48,794 out of 77,613
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The immune cell landscape in kidneys of lupus nephritis patients

immunology more details view paper

Downloaded 1,757 times
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- Site-wide: 3,678 out of 77,613
- In immunology: 65 out of 2,088
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- Site-wide: 14,492 out of 77,613
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- Site-wide: 16,621 out of 77,613

Single Cell Transcriptomics And Flow Cytometry Reveal Disease-Associated Fibroblast Subsets In Rheumatoid Arthritis

immunology more details view paper

Downloaded 1,698 times
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- Site-wide: 3,913 out of 77,613
- In immunology: 74 out of 2,088
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- Site-wide: 29,124 out of 77,613
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- Site-wide: 29,752 out of 77,613

GeNets: A unified web platform for network-based analyses of genomic data

genomics more details view paper

Downloaded 1,531 times
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- Site-wide: 4,643 out of 77,613
- In genomics: 814 out of 5,088
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- Site-wide: 68,058 out of 77,613
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- Site-wide: 69,194 out of 77,613

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

cancer biology more details view paper

Downloaded 1,412 times
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- Site-wide: 5,303 out of 77,613
- In cancer biology: 136 out of 2,689
Year to date:
- Site-wide: 211 out of 77,613
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- Site-wide: 318 out of 77,613

Targeting individual cells by barcode in pooled sequence libraries

bioengineering more details view paper

Downloaded 1,154 times
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- Site-wide: 7,440 out of 77,613
- In bioengineering: 131 out of 1,649
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- Site-wide: 68,358 out of 77,613
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- Site-wide: 69,355 out of 77,613

An eQTL landscape of kidney tissue in human nephrotic syndrome

genomics more details view paper

Downloaded 1,131 times
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- Site-wide: 7,688 out of 77,613
- In genomics: 1,206 out of 5,088
Year to date:
- Site-wide: 25,784 out of 77,613
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- Site-wide: 27,739 out of 77,613

High dimensional analyses of cells dissociated from cryopreserved synovial tissue

immunology more details view paper

Downloaded 941 times
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- Site-wide: 10,400 out of 77,613
- In immunology: 202 out of 2,088
Year to date:
- Site-wide: 23,790 out of 77,613
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- Site-wide: 19,371 out of 77,613

Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq

bioinformatics more details view paper

Downloaded 877 times
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- Site-wide: 11,622 out of 77,613
- In bioinformatics: 1,918 out of 7,502
Year to date:
- Site-wide: 2,603 out of 77,613
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- Site-wide: 3,110 out of 77,613

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

genomics more details view paper

Downloaded 843 times
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- Site-wide: 12,362 out of 77,613
- In genomics: 1,710 out of 5,088
Year to date:
- Site-wide: 42,776 out of 77,613
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- Site-wide: 37,905 out of 77,613

Multiplexed enrichment and genomic profiling of peripheral immune cell subsets on a microfluidic chip

bioengineering more details view paper

Downloaded 708 times
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- Site-wide: 16,023 out of 77,613
- In bioengineering: 294 out of 1,649
Year to date:
- Site-wide: 31,630 out of 77,613
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- Site-wide: 29,003 out of 77,613

MAUDE: Inferring expression changes in sorting-based CRISPR screens

bioinformatics more details view paper

Downloaded 508 times
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- Site-wide: 25,418 out of 77,613
- In bioinformatics: 3,491 out of 7,502
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- Site-wide: 7,910 out of 77,613
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- Site-wide: 8,199 out of 77,613

SLAMF6 deficiency augments tumor killing and skews towards an effector phenotype revealing it as a new T cell checkpoint

physiology more details view paper

Downloaded 190 times
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- Site-wide: 60,335 out of 77,613
- In physiology: 611 out of 1,010
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- Site-wide: 19,210 out of 77,613
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News

18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
8 Feb 2019: Data from Altmetric is now available on the Rxivist details page for every preprint. Look for the "donut" under the download metrics.
30 Jan 2019: preLights has featured the Rxivist preprint and written about our findings.
22 Jan 2019: Nature just published an article about Rxivist and our data.
13 Jan 2019: The Rxivist preprint is live!