Author: Nir Hacohen

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Preprints

Alternative splicing of SLAMF6 in human T cells creates a co-stimulatory isoform that counteracts the inhibitory effect of the full-length receptor

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The Human Cell Atlas

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Systematic comparative analysis of single cell RNA-sequencing methods

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A protocol for single-cell transcriptomics from cryopreserved renal tissue and urine for the Accelerating Medicine Partnership (AMP) RA/SLE network

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Defining Inflammatory Cell States in Rheumatoid Arthritis Joint Synovial Tissues by Integrating Single-cell Transcriptomics and Mass Cytometry

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Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

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Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

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Landscape of X chromosome inactivation across human tissues

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The immune cell landscape in kidneys of lupus nephritis patients

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Single Cell Transcriptomics And Flow Cytometry Reveal Disease-Associated Fibroblast Subsets In Rheumatoid Arthritis

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GeNets: A unified web platform for network-based analyses of genomic data

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Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq

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An eQTL landscape of kidney tissue in human nephrotic syndrome

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Targeting individual cells by barcode in pooled sequence libraries

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High dimensional analyses of cells dissociated from cryopreserved synovial tissue

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Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

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Multiplexed enrichment and genomic profiling of peripheral immune cell subsets on a microfluidic chip

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MAUDE: Inferring expression changes in sorting-based CRISPR screens

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SLAMF6 deficiency augments tumor killing and skews towards an effector phenotype revealing it as a new T cell checkpoint

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