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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 65,454 bioRxiv papers from 289,944 authors.

Author: Sarah A Teichmann

Rankings

  • All-time downloads: 80,189 (rank: 153 out of 289,944)
  • Categories:
    • bioinformatics: 10,846 (rank: 259 (tie) out of 25,248)
    • cancer biology: 2,614 (rank: 671 (tie) out of 18,137)
    • cell biology: 15,305 (rank: 13 out of 19,449)
    • developmental biology: 8,448 (rank: 6 out of 10,850)
    • evolutionary biology: 2,479 (rank: 764 (tie) out of 15,831)
    • genomics: 22,655 (rank: 280 out of 33,034)
    • immunology: 15,111 (rank: 11 out of 13,430)
    • systems biology: 2,731 (rank: 497 (tie) out of 8,800)

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,746 times
  • Download rankings, all-time:
    • Site-wide: 81 out of 65,454
    • In cell biology: 3 out of 3,154
  • Year to date:
    • Site-wide: 4,980 out of 65,454
  • Since beginning of last month:
    • Site-wide: 7,613 out of 65,454

Power Analysis of Single Cell RNA‐Sequencing Experiments

genomics more details view paper
  • Downloaded 9,395 times
  • Download rankings, all-time:
    • Site-wide: 129 out of 65,454
    • In genomics: 40 out of 4,464
  • Year to date:
    • Site-wide: 7,299 out of 65,454
  • Since beginning of last month:
    • Site-wide: 12,754 out of 65,454

A rapid and robust method for single cell chromatin accessibility profiling

genomics more details view paper
  • Downloaded 5,183 times
  • Download rankings, all-time:
    • Site-wide: 400 out of 65,454
    • In genomics: 105 out of 4,464
  • Year to date:
    • Site-wide: 665 out of 65,454
  • Since beginning of last month:
    • Site-wide: 6,754 out of 65,454

Single cell transcriptomics of regulatory T cells reveals trajectories of tissue adaptation

immunology more details view paper
  • Downloaded 4,414 times
  • Download rankings, all-time:
    • Site-wide: 547 out of 65,454
    • In immunology: 7 out of 1,663
  • Year to date:
    • Site-wide: 1,020 out of 65,454
  • Since beginning of last month:
    • Site-wide: 4,403 out of 65,454

Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants

genomics more details view paper
  • Downloaded 3,898 times
  • Download rankings, all-time:
    • Site-wide: 695 out of 65,454
    • In genomics: 182 out of 4,464
  • Year to date:
    • Site-wide: 241 out of 65,454
  • Since beginning of last month:
    • Site-wide: 2,730 out of 65,454

Assessment of batch-correction methods for scRNA-seq data with a new test metric

bioinformatics more details view paper
  • Downloaded 3,814 times
  • Download rankings, all-time:
    • Site-wide: 733 out of 65,454
    • In bioinformatics: 142 out of 6,491
  • Year to date:
    • Site-wide: 895 out of 65,454
  • Since beginning of last month:
    • Site-wide: 917 out of 65,454

Fast Batch Alignment of Single Cell Transcriptomes Unifies Multiple Mouse Cell Atlases into an Integrated Landscape

bioinformatics more details view paper
  • Downloaded 3,228 times
  • Download rankings, all-time:
    • Site-wide: 988 out of 65,454
    • In bioinformatics: 199 out of 6,491
  • Year to date:
    • Site-wide: 602 out of 65,454
  • Since beginning of last month:
    • Site-wide: 2,021 out of 65,454

Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics

developmental biology more details view paper
  • Downloaded 3,145 times
  • Download rankings, all-time:
    • Site-wide: 1,041 out of 65,454
    • In developmental biology: 15 out of 1,938
  • Year to date:
    • Site-wide: 1,718 out of 65,454
  • Since beginning of last month:
    • Site-wide: 4,083 out of 65,454

Genome-wide CRISPR screens in T helper cells reveal pervasive cross-talk between activation and differentiation

immunology more details view paper
  • Downloaded 3,048 times
  • Download rankings, all-time:
    • Site-wide: 1,111 out of 65,454
    • In immunology: 16 out of 1,663
  • Year to date:
    • Site-wide: 3,850 out of 65,454
  • Since beginning of last month:
    • Site-wide: 16,039 out of 65,454

Temporal mixture modelling of single-cell RNA-seq data resolves a CD4+ T cell fate bifurcation

systems biology more details view paper
  • Downloaded 2,731 times
  • Download rankings, all-time:
    • Site-wide: 1,352 out of 65,454
    • In systems biology: 30 out of 1,836
  • Year to date:
    • Site-wide: 21,834 out of 65,454
  • Since beginning of last month:
    • Site-wide: 47,345 out of 65,454

A cellular census of healthy lung and asthmatic airway wall identifies novel cell states in health and disease

immunology more details view paper
  • Downloaded 2,728 times
  • Download rankings, all-time:
    • Site-wide: 1,355 out of 65,454
    • In immunology: 18 out of 1,663
  • Year to date:
    • Site-wide: 259 out of 65,454
  • Since beginning of last month:
    • Site-wide: 904 out of 65,454

SpatialDE - Identification of spatially variable genes

genomics more details view paper
  • Downloaded 2,720 times
  • Download rankings, all-time:
    • Site-wide: 1,360 out of 65,454
    • In genomics: 309 out of 4,464
  • Year to date:
    • Site-wide: 11,117 out of 65,454
  • Since beginning of last month:
    • Site-wide: 12,839 out of 65,454

Single-cell RNA sequencing reveals a dynamic stromal niche within the evolving tumour microenvironment

cancer biology more details view paper
  • Downloaded 2,614 times
  • Download rankings, all-time:
    • Site-wide: 1,447 out of 65,454
    • In cancer biology: 40 out of 2,182
  • Year to date:
    • Site-wide: 557 out of 65,454
  • Since beginning of last month:
    • Site-wide: 997 out of 65,454

Simultaneously inferring T cell fate and clonality from single cell transcriptomes

bioinformatics more details view paper
  • Downloaded 2,597 times
  • Download rankings, all-time:
    • Site-wide: 1,466 out of 65,454
    • In bioinformatics: 289 out of 6,491
  • Year to date:
    • Site-wide: 28,693 out of 65,454
  • Since beginning of last month:
    • Site-wide: 26,324 out of 65,454

Gene expression variability across cells and species shapes innate immunity

evolutionary biology more details view paper
  • Downloaded 2,479 times
  • Download rankings, all-time:
    • Site-wide: 1,603 out of 65,454
    • In evolutionary biology: 67 out of 4,368
  • Year to date:
    • Site-wide: 12,285 out of 65,454
  • Since beginning of last month:
    • Site-wide: 20,759 out of 65,454

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

developmental biology more details view paper
  • Downloaded 2,344 times
  • Download rankings, all-time:
    • Site-wide: 1,779 out of 65,454
    • In developmental biology: 22 out of 1,938
  • Year to date:
    • Site-wide: 351 out of 65,454
  • Since beginning of last month:
    • Site-wide: 416 out of 65,454

CellPhoneDB v2.0: Inferring cell-cell communication from combined expression of multi-subunit receptor-ligand complexes

cell biology more details view paper
  • Downloaded 1,858 times
  • Download rankings, all-time:
    • Site-wide: 2,660 out of 65,454
    • In cell biology: 70 out of 3,154
  • Year to date:
    • Site-wide: 552 out of 65,454
  • Since beginning of last month:
    • Site-wide: 222 out of 65,454

Single-cell transcriptomics identifies CD44 as a new marker and regulator of haematopoietic stem cells development

developmental biology more details view paper
  • Downloaded 1,524 times
  • Download rankings, all-time:
    • Site-wide: 3,718 out of 65,454
    • In developmental biology: 53 out of 1,938
  • Year to date:
    • Site-wide: 3,457 out of 65,454
  • Since beginning of last month:
    • Site-wide: 7,397 out of 65,454

Establishment In Culture Of Expanded Potential Stem Cells

developmental biology more details view paper
  • Downloaded 1,435 times
  • Download rankings, all-time:
    • Site-wide: 4,139 out of 65,454
    • In developmental biology: 72 out of 1,938
  • Year to date:
    • Site-wide: 30,352 out of 65,454
  • Since beginning of last month:
    • Site-wide: 23,256 out of 65,454

BraCeR: Reconstruction of B-cell receptor sequences and clonality inference from single-cell RNA-sequencing

bioinformatics more details view paper
  • Downloaded 1,207 times
  • Download rankings, all-time:
    • Site-wide: 5,493 out of 65,454
    • In bioinformatics: 1,049 out of 6,491
  • Year to date:
    • Site-wide: 13,992 out of 65,454
  • Since beginning of last month:
    • Site-wide: 26,762 out of 65,454

Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4+ T cells.

immunology more details view paper
  • Downloaded 1,192 times
  • Download rankings, all-time:
    • Site-wide: 5,603 out of 65,454
    • In immunology: 76 out of 1,663
  • Year to date:
    • Site-wide: 1,302 out of 65,454
  • Since beginning of last month:
    • Site-wide: 8,479 out of 65,454

The IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

cell biology more details view paper
  • Downloaded 1,123 times
  • Download rankings, all-time:
    • Site-wide: 6,197 out of 65,454
    • In cell biology: 188 out of 3,154
  • Year to date:
    • Site-wide: 7,839 out of 65,454
  • Since beginning of last month:
    • Site-wide: 13,948 out of 65,454

Resolving the fibrotic niche of human liver cirrhosis using single-cell transcriptomics

immunology more details view paper
  • Downloaded 972 times
  • Download rankings, all-time:
    • Site-wide: 7,832 out of 65,454
    • In immunology: 124 out of 1,663
  • Year to date:
    • Site-wide: 1,847 out of 65,454
  • Since beginning of last month:
    • Site-wide: 357 out of 65,454

Unbiased classification of mosquito blood cells by single-cell genomics and high-content imaging

immunology more details view paper
  • Downloaded 936 times
  • Download rankings, all-time:
    • Site-wide: 8,345 out of 65,454
    • In immunology: 132 out of 1,663
  • Year to date:
    • Site-wide: 14,338 out of 65,454
  • Since beginning of last month:
    • Site-wide: 20,934 out of 65,454

Comparative analysis of sequencing technologies platforms for single-cell transcriptomics

genomics more details view paper
  • Downloaded 918 times
  • Download rankings, all-time:
    • Site-wide: 8,613 out of 65,454
    • In genomics: 1,336 out of 4,464
  • Year to date:
    • Site-wide: 6,048 out of 65,454
  • Since beginning of last month:
    • Site-wide: 34,705 out of 65,454

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immunity

immunology more details view paper
  • Downloaded 818 times
  • Download rankings, all-time:
    • Site-wide: 10,267 out of 65,454
    • In immunology: 164 out of 1,663
  • Year to date:
    • Site-wide: 42,662 out of 65,454
  • Since beginning of last month:
    • Site-wide: 25,684 out of 65,454

Cotranslational assembly imposes evolutionary constraints on homomeric proteins

cell biology more details view paper
  • Downloaded 578 times
  • Download rankings, all-time:
    • Site-wide: 16,867 out of 65,454
    • In cell biology: 693 out of 3,154
  • Year to date:
    • Site-wide: 45,087 out of 65,454
  • Since beginning of last month:
    • Site-wide: 47,012 out of 65,454

Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression

genomics more details view paper
  • Downloaded 541 times
  • Download rankings, all-time:
    • Site-wide: 18,420 out of 65,454
    • In genomics: 2,214 out of 4,464
  • Year to date:
    • Site-wide: 57,189 out of 65,454
  • Since beginning of last month:
    • Site-wide: 63,771 out of 65,454

Tumors induce de novo steroid biosynthesis in T cells to evade immunity

immunology more details view paper
  • Downloaded 533 times
  • Download rankings, all-time:
    • Site-wide: 18,792 out of 65,454
    • In immunology: 336 out of 1,663
  • Year to date:
    • Site-wide: 15,264 out of 65,454
  • Since beginning of last month:
    • Site-wide: 15,661 out of 65,454

Rora regulates activated T helper cells during inflammation

immunology more details view paper
  • Downloaded 470 times
  • Download rankings, all-time:
    • Site-wide: 21,948 out of 65,454
    • In immunology: 401 out of 1,663
  • Year to date:
    • Site-wide: 6,458 out of 65,454
  • Since beginning of last month:
    • Site-wide: 9,302 out of 65,454

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