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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,536 bioRxiv papers from 320,015 authors.

Author: Sarah A. Teichmann

Rankings

  • All-time downloads: 84,909 (rank: 183 out of 320,015)
  • Categories:
    • biochemistry: 204 (rank: 9,899 (tie) out of 13,141)
    • bioinformatics: 11,451 (rank: 275 out of 27,758)
    • cancer biology: 3,074 (rank: 593 (tie) out of 21,127)
    • cell biology: 17,754 (rank: 11 out of 22,510)
    • developmental biology: 9,179 (rank: 14 out of 12,307)
    • evolutionary biology: 2,540 (rank: 886 (tie) out of 17,022)
    • genomics: 23,258 (rank: 286 out of 35,692)
    • immunology: 14,678 (rank: 11 out of 15,552)
    • systems biology: 2,771 (rank: 606 (tie) out of 9,641)

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,890 times
  • Download rankings, all-time:
    • Site-wide: 98 out of 73,536
    • In cell biology: 3 out of 3,637
  • Year to date:
    • Site-wide: 9,855 out of 73,536
  • Since beginning of last month:
    • Site-wide: 9,855 out of 73,536

Power Analysis of Single Cell RNA‐Sequencing Experiments

genomics more details view paper
  • Downloaded 9,480 times
  • Download rankings, all-time:
    • Site-wide: 157 out of 73,536
    • In genomics: 43 out of 4,879
  • Year to date:
    • Site-wide: 15,362 out of 73,536
  • Since beginning of last month:
    • Site-wide: 15,362 out of 73,536

A rapid and robust method for single cell chromatin accessibility profiling

genomics more details view paper
  • Downloaded 5,331 times
  • Download rankings, all-time:
    • Site-wide: 445 out of 73,536
    • In genomics: 109 out of 4,879
  • Year to date:
    • Site-wide: 9,850 out of 73,536
  • Since beginning of last month:
    • Site-wide: 9,850 out of 73,536

Single cell transcriptomics of regulatory T cells reveals trajectories of tissue adaptation

immunology more details view paper
  • Downloaded 4,600 times
  • Download rankings, all-time:
    • Site-wide: 590 out of 73,536
    • In immunology: 7 out of 1,916
  • Year to date:
    • Site-wide: 6,292 out of 73,536
  • Since beginning of last month:
    • Site-wide: 6,292 out of 73,536

Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants

genomics more details view paper
  • Downloaded 4,135 times
  • Download rankings, all-time:
    • Site-wide: 725 out of 73,536
    • In genomics: 176 out of 4,879
  • Year to date:
    • Site-wide: 3,000 out of 73,536
  • Since beginning of last month:
    • Site-wide: 3,000 out of 73,536

Assessment of batch-correction methods for scRNA-seq data with a new test metric

bioinformatics more details view paper
  • Downloaded 4,065 times
  • Download rankings, all-time:
    • Site-wide: 746 out of 73,536
    • In bioinformatics: 145 out of 7,162
  • Year to date:
    • Site-wide: 3,562 out of 73,536
  • Since beginning of last month:
    • Site-wide: 3,562 out of 73,536

Fast Batch Alignment of Single Cell Transcriptomes Unifies Multiple Mouse Cell Atlases into an Integrated Landscape

bioinformatics more details view paper
  • Downloaded 3,474 times
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    • Site-wide: 1,008 out of 73,536
    • In bioinformatics: 198 out of 7,162
  • Year to date:
    • Site-wide: 3,362 out of 73,536
  • Since beginning of last month:
    • Site-wide: 3,362 out of 73,536

CellPhoneDB v2.0: Inferring cell-cell communication from combined expression of multi-subunit receptor-ligand complexes

cell biology more details view paper
  • Downloaded 3,439 times
  • Download rankings, all-time:
    • Site-wide: 1,023 out of 73,536
    • In cell biology: 32 out of 3,637
  • Year to date:
    • Site-wide: 139 out of 73,536
  • Since beginning of last month:
    • Site-wide: 139 out of 73,536

Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics

developmental biology more details view paper
  • Downloaded 3,278 times
  • Download rankings, all-time:
    • Site-wide: 1,133 out of 73,536
    • In developmental biology: 15 out of 2,209
  • Year to date:
    • Site-wide: 11,476 out of 73,536
  • Since beginning of last month:
    • Site-wide: 11,476 out of 73,536

Genome-wide CRISPR screens in T helper cells reveal pervasive cross-talk between activation and differentiation

immunology more details view paper
  • Downloaded 3,138 times
  • Download rankings, all-time:
    • Site-wide: 1,225 out of 73,536
    • In immunology: 17 out of 1,916
  • Year to date:
    • Site-wide: 12,271 out of 73,536
  • Since beginning of last month:
    • Site-wide: 12,271 out of 73,536

Single-cell RNA sequencing reveals a dynamic stromal niche within the evolving tumour microenvironment

cancer biology more details view paper
  • Downloaded 3,074 times
  • Download rankings, all-time:
    • Site-wide: 1,272 out of 73,536
    • In cancer biology: 34 out of 2,517
  • Year to date:
    • Site-wide: 1,617 out of 73,536
  • Since beginning of last month:
    • Site-wide: 1,617 out of 73,536

SpatialDE - Identification of spatially variable genes

genomics more details view paper
  • Downloaded 2,792 times
  • Download rankings, all-time:
    • Site-wide: 1,498 out of 73,536
    • In genomics: 335 out of 4,879
  • Year to date:
    • Site-wide: 25,489 out of 73,536
  • Since beginning of last month:
    • Site-wide: 25,489 out of 73,536

Temporal mixture modelling of single-cell RNA-seq data resolves a CD4+ T cell fate bifurcation

systems biology more details view paper
  • Downloaded 2,771 times
  • Download rankings, all-time:
    • Site-wide: 1,518 out of 73,536
    • In systems biology: 36 out of 2,014
  • Year to date:
    • Site-wide: 30,446 out of 73,536
  • Since beginning of last month:
    • Site-wide: 30,446 out of 73,536

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

developmental biology more details view paper
  • Downloaded 2,701 times
  • Download rankings, all-time:
    • Site-wide: 1,585 out of 73,536
    • In developmental biology: 20 out of 2,209
  • Year to date:
    • Site-wide: 1,941 out of 73,536
  • Since beginning of last month:
    • Site-wide: 1,941 out of 73,536

Simultaneously inferring T cell fate and clonality from single cell transcriptomes

bioinformatics more details view paper
  • Downloaded 2,636 times
  • Download rankings, all-time:
    • Site-wide: 1,659 out of 73,536
    • In bioinformatics: 330 out of 7,162
  • Year to date:
    • Site-wide: 27,330 out of 73,536
  • Since beginning of last month:
    • Site-wide: 27,330 out of 73,536

Gene expression variability across cells and species shapes innate immunity

evolutionary biology more details view paper
  • Downloaded 2,540 times
  • Download rankings, all-time:
    • Site-wide: 1,774 out of 73,536
    • In evolutionary biology: 73 out of 4,749
  • Year to date:
    • Site-wide: 23,242 out of 73,536
  • Since beginning of last month:
    • Site-wide: 23,242 out of 73,536

Single-cell transcriptomics identifies CD44 as a new marker and regulator of haematopoietic stem cells development

developmental biology more details view paper
  • Downloaded 1,687 times
  • Download rankings, all-time:
    • Site-wide: 3,640 out of 73,536
    • In developmental biology: 59 out of 2,209
  • Year to date:
    • Site-wide: 8,285 out of 73,536
  • Since beginning of last month:
    • Site-wide: 8,285 out of 73,536

Establishment In Culture Of Expanded Potential Stem Cells

developmental biology more details view paper
  • Downloaded 1,513 times
  • Download rankings, all-time:
    • Site-wide: 4,391 out of 73,536
    • In developmental biology: 79 out of 2,209
  • Year to date:
    • Site-wide: 18,034 out of 73,536
  • Since beginning of last month:
    • Site-wide: 18,034 out of 73,536

A cell atlas of human thymic development defines T cell repertoire formation

immunology more details view paper
  • Downloaded 1,411 times
  • Download rankings, all-time:
    • Site-wide: 4,929 out of 73,536
    • In immunology: 81 out of 1,916
  • Year to date:
    • Site-wide: 79 out of 73,536
  • Since beginning of last month:
    • Site-wide: 79 out of 73,536

Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4+ T cells.

immunology more details view paper
  • Downloaded 1,379 times
  • Download rankings, all-time:
    • Site-wide: 5,119 out of 73,536
    • In immunology: 83 out of 1,916
  • Year to date:
    • Site-wide: 8,346 out of 73,536
  • Since beginning of last month:
    • Site-wide: 8,346 out of 73,536

BraCeR: Reconstruction of B-cell receptor sequences and clonality inference from single-cell RNA-sequencing

bioinformatics more details view paper
  • Downloaded 1,276 times
  • Download rankings, all-time:
    • Site-wide: 5,808 out of 73,536
    • In bioinformatics: 1,103 out of 7,162
  • Year to date:
    • Site-wide: 27,838 out of 73,536
  • Since beginning of last month:
    • Site-wide: 27,838 out of 73,536

The IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

cell biology more details view paper
  • Downloaded 1,205 times
  • Download rankings, all-time:
    • Site-wide: 6,432 out of 73,536
    • In cell biology: 198 out of 3,637
  • Year to date:
    • Site-wide: 18,064 out of 73,536
  • Since beginning of last month:
    • Site-wide: 18,064 out of 73,536

Distinct microbial and immune niches of the human colon

immunology more details view paper
  • Downloaded 1,087 times
  • Download rankings, all-time:
    • Site-wide: 7,593 out of 73,536
    • In immunology: 132 out of 1,916
  • Year to date:
    • Site-wide: 834 out of 73,536
  • Since beginning of last month:
    • Site-wide: 834 out of 73,536

Unbiased classification of mosquito blood cells by single-cell genomics and high-content imaging

immunology more details view paper
  • Downloaded 1,023 times
  • Download rankings, all-time:
    • Site-wide: 8,406 out of 73,536
    • In immunology: 145 out of 1,916
  • Year to date:
    • Site-wide: 24,707 out of 73,536
  • Since beginning of last month:
    • Site-wide: 24,707 out of 73,536

Comparative analysis of sequencing technologies platforms for single-cell transcriptomics

genomics more details view paper
  • Downloaded 953 times
  • Download rankings, all-time:
    • Site-wide: 9,463 out of 73,536
    • In genomics: 1,424 out of 4,879
  • Year to date:
    • Site-wide: 39,880 out of 73,536
  • Since beginning of last month:
    • Site-wide: 39,880 out of 73,536

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immunity

immunology more details view paper
  • Downloaded 855 times
  • Download rankings, all-time:
    • Site-wide: 11,238 out of 73,536
    • In immunology: 209 out of 1,916
  • Year to date:
    • Site-wide: 53,469 out of 73,536
  • Since beginning of last month:
    • Site-wide: 53,469 out of 73,536

Tumors induce de novo steroid biosynthesis in T cells to evade immunity

immunology more details view paper
  • Downloaded 642 times
  • Download rankings, all-time:
    • Site-wide: 17,128 out of 73,536
    • In immunology: 326 out of 1,916
  • Year to date:
    • Site-wide: 12,956 out of 73,536
  • Since beginning of last month:
    • Site-wide: 12,956 out of 73,536

Single-cell sequencing of developing human gut reveals transcriptional links to childhood Crohns disease

cell biology more details view paper
  • Downloaded 618 times
  • Download rankings, all-time:
    • Site-wide: 18,074 out of 73,536
    • In cell biology: 764 out of 3,637
  • Year to date:
    • Site-wide: 260 out of 73,536
  • Since beginning of last month:
    • Site-wide: 260 out of 73,536

Cotranslational assembly imposes evolutionary constraints on homomeric proteins

cell biology more details view paper
  • Downloaded 602 times
  • Download rankings, all-time:
    • Site-wide: 18,791 out of 73,536
    • In cell biology: 805 out of 3,637
  • Year to date:
    • Site-wide: 56,274 out of 73,536
  • Since beginning of last month:
    • Site-wide: 56,274 out of 73,536

Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression

genomics more details view paper
  • Downloaded 567 times
  • Download rankings, all-time:
    • Site-wide: 20,390 out of 73,536
    • In genomics: 2,373 out of 4,879
  • Year to date:
    • Site-wide: 54,192 out of 73,536
  • Since beginning of last month:
    • Site-wide: 54,192 out of 73,536

Rora regulates activated T helper cells during inflammation

immunology more details view paper
  • Downloaded 543 times
  • Download rankings, all-time:
    • Site-wide: 21,618 out of 73,536
    • In immunology: 419 out of 1,916
  • Year to date:
    • Site-wide: 13,840 out of 73,536
  • Since beginning of last month:
    • Site-wide: 13,840 out of 73,536

CLICK-enabled analogues reveal pregnenolone interactomes in cancer and immune cells

biochemistry more details view paper
  • Downloaded 204 times
  • Download rankings, all-time:
    • Site-wide: 54,023 out of 73,536
    • In biochemistry: 1,567 out of 2,235
  • Year to date:
    • Site-wide: 24,477 out of 73,536
  • Since beginning of last month:
    • Site-wide: 24,477 out of 73,536

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