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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,725 bioRxiv papers from 278,303 authors.

Author: Andrew E Jaffe

Rankings

  • All-time downloads: 48,091 (rank: 280 out of 278,303)
  • Categories:
    • bioinformatics: 24,192 (rank: 66 out of 24,398)
    • cell biology: 306 (rank: 10,784 (tie) out of 18,419)
    • developmental biology: 896 (rank: 1,574 (tie) out of 10,310)
    • genetics: 758 (rank: 11,676 (tie) out of 27,714)
    • genomics: 13,792 (rank: 586 out of 31,927)
    • immunology: 298 (rank: 6,206 (tie) out of 12,531)
    • neuroscience: 7,849 (rank: 543 out of 45,882)

Downloads per author, site-wide

Preprints

Molecularly-Defined Hippocampal Inputs Regulate Population Dynamics in the Prelimbic Cortex to Suppress Context Fear Memory Recall

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No bioRxiv download data for this paper yet.

Flexible analysis of transcriptome assemblies with Ballgown

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    • Site-wide: 59 out of 62,725
    • In bioinformatics: 9 out of 6,249
  • Year to date:
    • Site-wide: 2,000 out of 62,725
  • Since beginning of last month:
    • Site-wide: 5,035 out of 62,725

recount: A large-scale resource of analysis-ready RNA-seq expression data

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  • Downloaded 3,534 times
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    • In genomics: 206 out of 4,314
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    • Site-wide: 7,271 out of 62,725
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    • Site-wide: 5,558 out of 62,725

Rail-RNA: Scalable analysis of RNA-seq splicing and coverage

bioinformatics more details view paper
  • Downloaded 3,224 times
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    • In bioinformatics: 189 out of 6,249
  • Year to date:
    • Site-wide: 31,048 out of 62,725
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    • Site-wide: 37,517 out of 62,725

Human splicing diversity across the Sequence Read Archive

genomics more details view paper
  • Downloaded 2,248 times
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    • In genomics: 400 out of 4,314
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    • Site-wide: 24,645 out of 62,725

Flexible expressed region analysis for RNA-seq with derfinder

bioinformatics more details view paper
  • Downloaded 2,173 times
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    • Site-wide: 1,921 out of 62,725
    • In bioinformatics: 393 out of 6,249
  • Year to date:
    • Site-wide: 37,622 out of 62,725
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    • Site-wide: 57,328 out of 62,725

Polyester: simulating RNA-seq datasets with differential transcript expression

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  • Downloaded 2,086 times
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    • In bioinformatics: 430 out of 6,249
  • Year to date:
    • Site-wide: 21,718 out of 62,725
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    • Site-wide: 20,497 out of 62,725

Developmental And Genetic Regulation Of The Human Cortex Transcriptome In Schizophrenia

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  • Downloaded 2,066 times
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    • In neuroscience: 301 out of 11,204
  • Year to date:
    • Site-wide: 16,065 out of 62,725
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    • Site-wide: 17,691 out of 62,725

A Bayesian Framework for Multiple Trait Colocalization from Summary Association Statistics

genomics more details view paper
  • Downloaded 2,018 times
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    • In genomics: 465 out of 4,314
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    • Site-wide: 6,656 out of 62,725
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    • Site-wide: 16,731 out of 62,725

Addressing confounding artifacts in reconstruction of gene co-expression networks

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  • Downloaded 1,992 times
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    • In genomics: 475 out of 4,314
  • Year to date:
    • Site-wide: 4,749 out of 62,725
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    • Site-wide: None out of 62,725

A framework for RNA quality correction in differential expression analysis

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  • Downloaded 1,529 times
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    • In bioinformatics: 710 out of 6,249
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    • Site-wide: 42,144 out of 62,725

Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods

genomics more details view paper
  • Downloaded 1,137 times
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    • In genomics: 965 out of 4,314
  • Year to date:
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    • Site-wide: 3,939 out of 62,725

Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs

genomics more details view paper
  • Downloaded 1,080 times
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    • In genomics: 1,038 out of 4,314
  • Year to date:
    • Site-wide: 3,111 out of 62,725
  • Since beginning of last month:
    • Site-wide: 3,980 out of 62,725

Defects of myelination are common pathophysiology in syndromic and idiopathic autism spectrum disorders

neuroscience more details view paper
  • Downloaded 904 times
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    • Site-wide: 8,320 out of 62,725
    • In neuroscience: 1,294 out of 11,204
  • Year to date:
    • Site-wide: 22,811 out of 62,725
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    • Site-wide: 30,358 out of 62,725

The methylome of the human frontal cortex across development

developmental biology more details view paper
  • Downloaded 896 times
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    • In developmental biology: 187 out of 1,870
  • Year to date:
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    • Site-wide: 51,342 out of 62,725

Characterizing the nuclear and cytoplasmic transcriptomes in developing and mature human cortex uncovers new insight into psychiatric disease gene regulation

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  • Downloaded 817 times
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    • In neuroscience: 1,522 out of 11,204
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    • Site-wide: 5,885 out of 62,725

Placental gene expression mediates the interaction between obstetrical history and genetic risk for schizophrenia

genetics more details view paper
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    • In genetics: 781 out of 3,562
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    • Site-wide: 50,433 out of 62,725

Correcting For Cell-Type Heterogeneity In Epigenome-Wide Association Studies: Premature Analyses And Conclusions

bioinformatics more details view paper
  • Downloaded 707 times
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    • Site-wide: 11,983 out of 62,725
    • In bioinformatics: 1,991 out of 6,249
  • Year to date:
    • Site-wide: 49,321 out of 62,725
  • Since beginning of last month:
    • Site-wide: 53,258 out of 62,725

recount-brain: a curated repository of human brain RNA-seq datasets metadata

genomics more details view paper
  • Downloaded 664 times
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    • Site-wide: 13,147 out of 62,725
    • In genomics: 1,775 out of 4,314
  • Year to date:
    • Site-wide: 3,005 out of 62,725
  • Since beginning of last month:
    • Site-wide: 3,970 out of 62,725

Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex across development and in schizophrenia

neuroscience more details view paper
  • Downloaded 623 times
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    • Site-wide: 14,301 out of 62,725
    • In neuroscience: 2,326 out of 11,204
  • Year to date:
    • Site-wide: 8,120 out of 62,725
  • Since beginning of last month:
    • Site-wide: 15,631 out of 62,725

Recounting the FANTOM Cage Associated Transcriptome

genomics more details view paper
  • Downloaded 588 times
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    • Site-wide: 15,539 out of 62,725
    • In genomics: 1,968 out of 4,314
  • Year to date:
    • Site-wide: 3,721 out of 62,725
  • Since beginning of last month:
    • Site-wide: 7,488 out of 62,725

Divergent neuronal DNA methylation patterns across human cortical development: Critical periods and a unique role of CpH methylation

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  • Downloaded 580 times
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    • In neuroscience: 2,604 out of 11,204
  • Year to date:
    • Site-wide: 8,664 out of 62,725
  • Since beginning of last month:
    • Site-wide: 10,607 out of 62,725

Identification and prioritization of gene sets associated with schizophrenia risk by co-expression network analysis in human brain

neuroscience more details view paper
  • Downloaded 546 times
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    • Site-wide: 17,159 out of 62,725
    • In neuroscience: 2,837 out of 11,204
  • Year to date:
    • Site-wide: 28,041 out of 62,725
  • Since beginning of last month:
    • Site-wide: 40,095 out of 62,725

Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer's disease

genomics more details view paper
  • Downloaded 531 times
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    • In genomics: 2,150 out of 4,314
  • Year to date:
    • Site-wide: 8,986 out of 62,725
  • Since beginning of last month:
    • Site-wide: 22,915 out of 62,725

dotdotdot: an automated approach to quantify multiplex single molecule fluorescent in situ hybridization (smFISH) images in complex tissues

neuroscience more details view paper
  • Downloaded 494 times
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    • In neuroscience: 3,250 out of 11,204
  • Year to date:
    • Site-wide: 4,996 out of 62,725
  • Since beginning of last month:
    • Site-wide: 181 out of 62,725

BDNF-TrkB signaling in oxytocin neurons contributes to maternal behavior

neuroscience more details view paper
  • Downloaded 488 times
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    • Site-wide: 19,720 out of 62,725
    • In neuroscience: 3,298 out of 11,204
  • Year to date:
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    • Site-wide: 36,124 out of 62,725

Prefrontal co-expression of schizophrenia risk genes is associated with treatment response in patients

neuroscience more details view paper
  • Downloaded 466 times
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    • Site-wide: 20,865 out of 62,725
    • In neuroscience: 3,505 out of 11,204
  • Year to date:
    • Site-wide: 16,204 out of 62,725
  • Since beginning of last month:
    • Site-wide: 7,649 out of 62,725

regionReport: Interactive reports for region-based analyses

bioinformatics more details view paper
  • Downloaded 429 times
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    • Site-wide: 22,911 out of 62,725
    • In bioinformatics: 3,259 out of 6,249
  • Year to date:
    • Site-wide: 60,206 out of 62,725
  • Since beginning of last month:
    • Site-wide: 56,373 out of 62,725

Incomplete annotation of disease-associated genes is limiting our understanding of Mendelian and complex neurogenetic disorders

bioinformatics more details view paper
  • Downloaded 391 times
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    • Site-wide: 25,411 out of 62,725
    • In bioinformatics: 3,494 out of 6,249
  • Year to date:
    • Site-wide: 9,958 out of 62,725
  • Since beginning of last month:
    • Site-wide: 16,176 out of 62,725

Integrating brain methylome with GWAS for psychiatric risk gene discovery

bioinformatics more details view paper
  • Downloaded 321 times
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    • Site-wide: 30,939 out of 62,725
    • In bioinformatics: 3,989 out of 6,249
  • Year to date:
    • Site-wide: 25,015 out of 62,725
  • Since beginning of last month:
    • Site-wide: 30,848 out of 62,725

Strong Components of Epigenetic Memory in Cultured Human Fibroblasts Related to Site of Origin and Donor Age

cell biology more details view paper
  • Downloaded 306 times
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    • Site-wide: 32,311 out of 62,725
    • In cell biology: 1,525 out of 2,991
  • Year to date:
    • Site-wide: 58,068 out of 62,725
  • Since beginning of last month:
    • Site-wide: 57,501 out of 62,725

Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome

neuroscience more details view paper
  • Downloaded 303 times
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    • Site-wide: 32,597 out of 62,725
    • In neuroscience: 5,611 out of 11,204
  • Year to date:
    • Site-wide: 42,018 out of 62,725
  • Since beginning of last month:
    • Site-wide: 37,906 out of 62,725

Cell type-specific genetic regulation of expression in the granule cell layer of the human dentate gyrus

neuroscience more details view paper
  • Downloaded 302 times
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    • In neuroscience: 5,629 out of 11,204
  • Year to date:
    • Site-wide: 11,178 out of 62,725
  • Since beginning of last month:
    • Site-wide: 9,098 out of 62,725

Non-coding Class Switch Recombination-related transcription in human normal and pathological immune responses

immunology more details view paper
  • Downloaded 298 times
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    • Site-wide: 32,985 out of 62,725
    • In immunology: 645 out of 1,562
  • Year to date:
    • Site-wide: 38,181 out of 62,725
  • Since beginning of last month:
    • Site-wide: 30,000 out of 62,725

Association of a lincRNA postmortem with suicide by violent means and in vivo with aggressive phenotypes

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  • Downloaded 213 times
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    • Site-wide: 42,316 out of 62,725
    • In neuroscience: 7,398 out of 11,204
  • Year to date:
    • Site-wide: 50,280 out of 62,725
  • Since beginning of last month:
    • Site-wide: 41,321 out of 62,725

Genome-wide DNA methylation differences in nucleus accumbens of smokers vs. nonsmokers

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  • Downloaded 47 times
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    • Site-wide: 60,771 out of 62,725
    • In neuroscience: 10,780 out of 11,204
  • Year to date:
    • Site-wide: 58,729 out of 62,725
  • Since beginning of last month:
    • Site-wide: 9,246 out of 62,725

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