Author: Leonardo Collado-Torres

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Preprints

Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex

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recount: A large-scale resource of analysis-ready RNA-seq expression data

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Flexible expressed region analysis for RNA-seq with derfinder

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Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods

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Improving the value of public RNA-seq expression data by phenotype prediction

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Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs

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recount-brain: a curated repository of human brain RNA-seq datasets metadata

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Recounting the FANTOM Cage Associated Transcriptome

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Divergent neuronal DNA methylation patterns across human cortical development: Critical periods and a unique role of CpH methylation

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Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex across development and in schizophrenia

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SynGAP splice isoforms differentially regulate synaptic plasticity and dendritic development

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Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer's disease

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Incomplete annotation of disease-associated genes is limiting our understanding of Mendelian and complex neurogenetic disorders

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Single-nucleus transcriptome analysis reveals cell type-specific molecular signatures across reward circuitry in the human brain

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regionReport: Interactive reports for region-based analyses

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SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor

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Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome

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Non-coding Class Switch Recombination-related transcription in human normal and pathological immune responses

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SPEAQeasy: a Scalable Pipeline for Expression Analysis and Quantification for R/Bioconductor-powered RNA-seq analyses

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Widespread methylation quantitative trait loci and their role in schizophrenia risk

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Megadepth: efficient coverage quantification for BigWigs and BAMs

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Caudate transcriptome implicates decreased presynaptic autoregulation as the dopamine risk factor for schizophrenia

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Programmatic access to bacterial regulatory networks with regutools

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