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Author: Leonardo Collado-Torres

Rankings

  • All-time downloads: 28,079 (rank: 5,093 )
  • Categories:
    • bioinformatics: 6,458 (rank: 1,519 )
    • genomics: 10,888 (rank: 1,604 )
    • immunology: 448 (rank: 16,565 (tie) )
    • neuroscience: 10,118 (rank: 1,110 )
    • psychiatry and clinical psychology: 167 (rank: 3,900 (tie) )

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Preprints

Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex

neuroscience more details view paper
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    • Site-wide: 1,344
    • In neuroscience: 64
  • Year to date:
    • Site-wide: 866
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recount: A large-scale resource of analysis-ready RNA-seq expression data

genomics more details view paper
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    • Site-wide: 2,359
    • In genomics: 268
  • Year to date:
    • Site-wide: 14,707
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Flexible expressed region analysis for RNA-seq with derfinder

bioinformatics more details view paper
  • Downloaded 2,379 times
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    • Site-wide: 5,387
    • In bioinformatics: 623
  • Year to date:
    • Site-wide: 53,869
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    • Site-wide: 53,869

Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods

genomics more details view paper
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    • Site-wide: 8,720
    • In genomics: 984
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Improving the value of public RNA-seq expression data by phenotype prediction

bioinformatics more details view paper
  • Downloaded 1,659 times
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    • Site-wide: 9,169
    • In bioinformatics: 1,127
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    • Site-wide: 81,055
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Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs

genomics more details view paper
  • Downloaded 1,593 times
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    • Site-wide: 9,719
    • In genomics: 1,085
  • Year to date:
    • Site-wide: 29,957
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recount-brain: a curated repository of human brain RNA-seq datasets metadata

genomics more details view paper
  • Downloaded 1,128 times
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    • Site-wide: 16,290
    • In genomics: 1,718
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Recounting the FANTOM Cage Associated Transcriptome

genomics more details view paper
  • Downloaded 1,124 times
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    • Site-wide: 16,380
    • In genomics: 1,726
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Divergent neuronal DNA methylation patterns across human cortical development: Critical periods and a unique role of CpH methylation

neuroscience more details view paper
  • Downloaded 978 times
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    • Site-wide: 20,109
    • In neuroscience: 2,584
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Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex across development and in schizophrenia

neuroscience more details view paper
  • Downloaded 907 times
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    • Site-wide: 22,386
    • In neuroscience: 2,940
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    • Site-wide: 71,034
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    • Site-wide: 71,034

SynGAP splice isoforms differentially regulate synaptic plasticity and dendritic development

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    • Site-wide: 22,420
    • In neuroscience: 2,949
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    • Site-wide: 28,983
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Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer's disease

genomics more details view paper
  • Downloaded 895 times
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    • Site-wide: 22,847
    • In genomics: 2,251
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    • Site-wide: 57,649
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Incomplete annotation of disease-associated genes is limiting our understanding of Mendelian and complex neurogenetic disorders

bioinformatics more details view paper
  • Downloaded 707 times
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    • Site-wide: 31,792
    • In bioinformatics: 3,603
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    • Site-wide: 33,894
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Single-nucleus transcriptome analysis reveals cell type-specific molecular signatures across reward circuitry in the human brain

neuroscience more details view paper
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    • Site-wide: 41,410
    • In neuroscience: 5,979
  • Year to date:
    • Site-wide: 8,451
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regionReport: Interactive reports for region-based analyses

bioinformatics more details view paper
  • Downloaded 522 times
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    • Site-wide: 46,839
    • In bioinformatics: 4,930
  • Year to date:
    • Site-wide: 119,357
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    • Site-wide: 119,357

SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor

bioinformatics more details view paper
  • Downloaded 478 times
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    • Site-wide: 51,863
    • In bioinformatics: 5,353
  • Year to date:
    • Site-wide: 1,159
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    • Site-wide: 1,159

Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome

neuroscience more details view paper
  • Downloaded 468 times
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    • Site-wide: 53,045
    • In neuroscience: 7,951
  • Year to date:
    • Site-wide: None
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Non-coding Class Switch Recombination-related transcription in human normal and pathological immune responses

immunology more details view paper
  • Downloaded 448 times
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    • Site-wide: 55,687
    • In immunology: 1,496
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    • Site-wide: 76,762
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    • Site-wide: 76,762

SPEAQeasy: a Scalable Pipeline for Expression Analysis and Quantification for R/Bioconductor-powered RNA-seq analyses

bioinformatics more details view paper
  • Downloaded 316 times
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    • Site-wide: 76,758
    • In bioinformatics: 7,096
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    • Site-wide: 25,921
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Widespread methylation quantitative trait loci and their role in schizophrenia risk

genomics more details view paper
  • Downloaded 243 times
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    • Site-wide: 91,869
    • In genomics: 5,688
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Megadepth: efficient coverage quantification for BigWigs and BAMs

bioinformatics more details view paper
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    • Site-wide: 93,872
    • In bioinformatics: 8,204
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Caudate transcriptome implicates decreased presynaptic autoregulation as the dopamine risk factor for schizophrenia

psychiatry and clinical psychology more details view paper
  • Downloaded 167 times
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    • Site-wide: 108,069
    • In psychiatry and clinical psychology: 424
  • Year to date:
    • Site-wide: 18,348
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    • Site-wide: 18,348

Programmatic access to bacterial regulatory networks with regutools

bioinformatics more details view paper
  • Downloaded 164 times
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    • Site-wide: 108,641
    • In bioinformatics: 9,066
  • Year to date:
    • Site-wide: 89,853
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