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Author: Eleazar Eskin

Rankings

  • All-time downloads: 75,691 (rank: 1,839 )
  • Categories:
    • bioinformatics: 29,135 (rank: 97 )
    • epidemiology: 343 (rank: 18,667 (tie) )
    • genetics: 15,303 (rank: 915 )
    • genomics: 15,754 (rank: 875 )
    • health informatics: 374 (rank: 1,650 (tie) )
    • immunology: 4,500 (rank: 1,605 (tie) )
    • infectious diseases: 5,080 (rank: 7,286 (tie) )
    • microbiology: 4,018 (rank: 3,295 (tie) )
    • public and global health: 299 (rank: 7,118 (tie) )
    • scientific communication and education: 885 (rank: 1,100 (tie) )

Downloads per author, site-wide

Preprints

Challenges and recommendations to improve installability and archival stability of omics computational tools

bioinformatics more details view paper
  • Downloaded 5,404 times
  • Download rankings, all-time:
    • Site-wide: 1,795
    • In bioinformatics: 144
  • Year to date:
    • Site-wide: 36,229
  • Since beginning of last month:
    • Site-wide: 35,611

Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing

infectious diseases more details view paper
  • Downloaded 5,080 times
  • Download rankings, all-time:
    • Site-wide: 1,941
    • In infectious diseases: 449
  • Year to date:
    • Site-wide: 1,972
  • Since beginning of last month:
    • Site-wide: 2,483

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
  • Downloaded 4,632 times
  • Download rankings, all-time:
    • Site-wide: 2,216
    • In genomics: 240
  • Year to date:
    • Site-wide: 27,016
  • Since beginning of last month:
    • Site-wide: 35,613

Profiling immunoglobulin repertoires across multiple human tissues by RNA Sequencing

immunology more details view paper
  • Downloaded 4,500 times
  • Download rankings, all-time:
    • Site-wide: 2,309
    • In immunology: 63
  • Year to date:
    • Site-wide: 16,071
  • Since beginning of last month:
    • Site-wide: 15,935

Local genetic effects on gene expression across 44 human tissues

genomics more details view paper
  • Downloaded 4,452 times
  • Download rankings, all-time:
    • Site-wide: 2,343
    • In genomics: 257
  • Year to date:
    • Site-wide: 57,874
  • Since beginning of last month:
    • Site-wide: 53,073

Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia

microbiology more details view paper
  • Downloaded 4,018 times
  • Download rankings, all-time:
    • Site-wide: 2,712
    • In microbiology: 194
  • Year to date:
    • Site-wide: 25,323
  • Since beginning of last month:
    • Site-wide: 28,685

Word and sentence embedding tools to measure semantic similarity of Gene Ontology terms by their definitions

bioinformatics more details view paper
  • Downloaded 3,142 times
  • Download rankings, all-time:
    • Site-wide: 3,881
    • In bioinformatics: 403
  • Year to date:
    • Site-wide: 12,881
  • Since beginning of last month:
    • Site-wide: 11,829

Distant regulatory effects of genetic variation in multiple human tissues

genomics more details view paper
  • Downloaded 2,768 times
  • Download rankings, all-time:
    • Site-wide: 4,635
    • In genomics: 515
  • Year to date:
    • Site-wide: 65,932
  • Since beginning of last month:
    • Site-wide: 67,286

Comprehensive analysis of RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues

genomics more details view paper
  • Downloaded 2,764 times
  • Download rankings, all-time:
    • Site-wide: 4,647
    • In genomics: 516
  • Year to date:
    • Site-wide: 55,384
  • Since beginning of last month:
    • Site-wide: 39,342

UMI-Reducer: Collapsing duplicate sequencing reads via Unique Molecular Identifiers

bioinformatics more details view paper
  • Downloaded 2,633 times
  • Download rankings, all-time:
    • Site-wide: 4,979
    • In bioinformatics: 539
  • Year to date:
    • Site-wide: 32,320
  • Since beginning of last month:
    • Site-wide: 22,750

Review: Population Structure in Genetic Studies: Confounding Factors and Mixed Models

bioinformatics more details view paper
  • Downloaded 2,496 times
  • Download rankings, all-time:
    • Site-wide: 5,404
    • In bioinformatics: 600
  • Year to date:
    • Site-wide: 48,526
  • Since beginning of last month:
    • Site-wide: 37,756

A comprehensive benchmarking of WGS-based structural variant callers

bioinformatics more details view paper
  • Downloaded 2,169 times
  • Download rankings, all-time:
    • Site-wide: 6,621
    • In bioinformatics: 777
  • Year to date:
    • Site-wide: 5,600
  • Since beginning of last month:
    • Site-wide: 5,451

Widespread allelic heterogeneity in complex traits

genetics more details view paper
  • Downloaded 1,836 times
  • Download rankings, all-time:
    • Site-wide: 8,527
    • In genetics: 401
  • Year to date:
    • Site-wide: 91,061
  • Since beginning of last month:
    • Site-wide: 90,673

Leveraging molecular QTL to understand the genetic architecture of diseases and complex traits

genetics more details view paper
  • Downloaded 1,685 times
  • Download rankings, all-time:
    • Site-wide: 9,695
    • In genetics: 459
  • Year to date:
    • Site-wide: 128,917
  • Since beginning of last month:
    • Site-wide: 131,890

Colocalization of GWAS and eQTL Signals Detects Target Genes

genetics more details view paper
  • Downloaded 1,616 times
  • Download rankings, all-time:
    • Site-wide: 10,288
    • In genetics: 497
  • Year to date:
    • Site-wide: 94,341
  • Since beginning of last month:
    • Site-wide: 74,917

Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology

bioinformatics more details view paper
  • Downloaded 1,437 times
  • Download rankings, all-time:
    • Site-wide: 12,197
    • In bioinformatics: 1,490
  • Year to date:
    • Site-wide: 96,128
  • Since beginning of last month:
    • Site-wide: 75,375

MiCoP: Microbial Community Profiling method for detecting viral and fungal organisms in metagenomic samples

bioinformatics more details view paper
  • Downloaded 1,431 times
  • Download rankings, all-time:
    • Site-wide: 12,294
    • In bioinformatics: 1,494
  • Year to date:
    • Site-wide: 104,549
  • Since beginning of last month:
    • Site-wide: 92,548

Benchmarking of computational error-correction methods for next-generation sequencing data

bioinformatics more details view paper
  • Downloaded 1,429 times
  • Download rankings, all-time:
    • Site-wide: 12,325
    • In bioinformatics: 1,499
  • Year to date:
    • Site-wide: 57,916
  • Since beginning of last month:
    • Site-wide: 67,363

Improved methods for multi-trait fine mapping of pleiotropic risk loci

genetics more details view paper
  • Downloaded 1,198 times
  • Download rankings, all-time:
    • Site-wide: 16,108
    • In genetics: 795
  • Year to date:
    • Site-wide: 90,957
  • Since beginning of last month:
    • Site-wide: 61,609

Genetic variation and gene expression across multiple tissues and developmental stages in a non-human primate

genetics more details view paper
  • Downloaded 1,142 times
  • Download rankings, all-time:
    • Site-wide: 17,270
    • In genetics: 845
  • Year to date:
    • Site-wide: 110,917
  • Since beginning of last month:
    • Site-wide: 109,494

Spatial localization of recent ancestors for admixed individuals

genetics more details view paper
  • Downloaded 1,136 times
  • Download rankings, all-time:
    • Site-wide: 17,423
    • In genetics: 851
  • Year to date:
    • Site-wide: 104,213
  • Since beginning of last month:
    • Site-wide: 111,285

The genetic basis of host choice and resting behavior in the major African malaria vector, Anopheles arabiensis

genetics more details view paper
  • Downloaded 1,134 times
  • Download rankings, all-time:
    • Site-wide: 17,458
    • In genetics: 853
  • Year to date:
    • Site-wide: 70,901
  • Since beginning of last month:
    • Site-wide: 81,475

An Ancestry Based Approach for Detecting Interactions

genetics more details view paper
  • Downloaded 1,110 times
  • Download rankings, all-time:
    • Site-wide: 18,015
    • In genetics: 882
  • Year to date:
    • Site-wide: 79,023
  • Since beginning of last month:
    • Site-wide: 90,600

HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads

bioinformatics more details view paper
  • Downloaded 989 times
  • Download rankings, all-time:
    • Site-wide: 21,307
    • In bioinformatics: 2,524
  • Year to date:
    • Site-wide: 75,319
  • Since beginning of last month:
    • Site-wide: 53,291

A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference

bioinformatics more details view paper
  • Downloaded 984 times
  • Download rankings, all-time:
    • Site-wide: 21,456
    • In bioinformatics: 2,541
  • Year to date:
    • Site-wide: 124,297
  • Since beginning of last month:
    • Site-wide: 121,693

Leveraging allele-specific expression to refine fine-mapping for eQTL studies

genetics more details view paper
  • Downloaded 975 times
  • Download rankings, all-time:
    • Site-wide: 21,737
    • In genetics: 1,045
  • Year to date:
    • Site-wide: 119,154
  • Since beginning of last month:
    • Site-wide: 132,168

Selection on the FADS region in Europeans

genetics more details view paper
  • Downloaded 958 times
  • Download rankings, all-time:
    • Site-wide: 22,324
    • In genetics: 1,077
  • Year to date:
    • Site-wide: 110,893
  • Since beginning of last month:
    • Site-wide: 90,660

Rapid cost-effective viral genome sequencing by V-seq

genomics more details view paper
  • Downloaded 954 times
  • Download rankings, all-time:
    • Site-wide: 22,479
    • In genomics: 2,195
  • Year to date:
    • Site-wide: 13,534
  • Since beginning of last month:
    • Site-wide: 22,077

Improving the usability and comprehensiveness of microbial databases

bioinformatics more details view paper
  • Downloaded 901 times
  • Download rankings, all-time:
    • Site-wide: 24,432
    • In bioinformatics: 2,872
  • Year to date:
    • Site-wide: 65,839
  • Since beginning of last month:
    • Site-wide: 49,781

Long single-molecule reads can resolve the complexity of the Influenza virus composed of rare, closely related mutant variants

bioinformatics more details view paper
  • Downloaded 895 times
  • Download rankings, all-time:
    • Site-wide: 24,645
    • In bioinformatics: 2,904
  • Year to date:
    • Site-wide: 85,335
  • Since beginning of last month:
    • Site-wide: 112,429

Addressing the digital divide in contemporary biology: Lessons from teaching UNIX

scientific communication and education more details view paper
  • Downloaded 885 times
  • Download rankings, all-time:
    • Site-wide: 25,100
    • In scientific communication and education: 190
  • Year to date:
    • Site-wide: 90,962
  • Since beginning of last month:
    • Site-wide: 81,762

Metalign: Efficient alignment-based metagenomic profiling via containment min hash

bioinformatics more details view paper
  • Downloaded 792 times
  • Download rankings, all-time:
    • Site-wide: 29,259
    • In bioinformatics: 3,353
  • Year to date:
    • Site-wide: 82,577
  • Since beginning of last month:
    • Site-wide: 83,925

Identifying Causal Variants by Fine Mapping Across Multiple Studies

bioinformatics more details view paper
  • Downloaded 772 times
  • Download rankings, all-time:
    • Site-wide: 30,353
    • In bioinformatics: 3,458
  • Year to date:
    • Site-wide: 27,294
  • Since beginning of last month:
    • Site-wide: 21,428

A method to map and interpret pleiotropic loci using summary statistics of multiple traits

bioinformatics more details view paper
  • Downloaded 756 times
  • Download rankings, all-time:
    • Site-wide: 31,249
    • In bioinformatics: 3,519
  • Year to date:
    • Site-wide: 19,660
  • Since beginning of last month:
    • Site-wide: 25,982

Evaluating Representations for Gene Ontology Terms

bioinformatics more details view paper
  • Downloaded 747 times
  • Download rankings, all-time:
    • Site-wide: 31,776
    • In bioinformatics: 3,575
  • Year to date:
    • Site-wide: 29,712
  • Since beginning of last month:
    • Site-wide: 39,588

The Multivariate Normal Distribution Framework for Analyzing Association Studies

genetics more details view paper
  • Downloaded 728 times
  • Download rankings, all-time:
    • Site-wide: 32,963
    • In genetics: 1,594
  • Year to date:
    • Site-wide: 74,726
  • Since beginning of last month:
    • Site-wide: 73,982

Fast and accurate construction of confidence intervals for heritability

genetics more details view paper
  • Downloaded 662 times
  • Download rankings, all-time:
    • Site-wide: 37,410
    • In genetics: 1,783
  • Year to date:
    • Site-wide: 81,273
  • Since beginning of last month:
    • Site-wide: 61,994

Applying meta-analysis to Genotype-Tissue Expression data from multiple tissues to identify eQTLs and increase the number of eGenes

bioinformatics more details view paper
  • Downloaded 629 times
  • Download rankings, all-time:
    • Site-wide: 39,934
    • In bioinformatics: 4,332
  • Year to date:
    • Site-wide: 119,781
  • Since beginning of last month:
    • Site-wide: 126,487

Annotating Gene Ontology terms for protein sequences with the Transformer model

bioinformatics more details view paper
  • Downloaded 484 times
  • Download rankings, all-time:
    • Site-wide: 54,915
    • In bioinformatics: 5,573
  • Year to date:
    • Site-wide: 33,327
  • Since beginning of last month:
    • Site-wide: 55,887

A unifying framework for summary statistic imputation

bioinformatics more details view paper
  • Downloaded 483 times
  • Download rankings, all-time:
    • Site-wide: 55,059
    • In bioinformatics: 5,586
  • Year to date:
    • Site-wide: 127,594
  • Since beginning of last month:
    • Site-wide: 107,278

Leveraging allelic heterogeneity to increase power of association testing

genetics more details view paper
  • Downloaded 442 times
  • Download rankings, all-time:
    • Site-wide: 60,469
    • In genetics: 2,809
  • Year to date:
    • Site-wide: 95,674
  • Since beginning of last month:
    • Site-wide: 109,248

Projecting hospital resource utilization during a surge using parametric bootstrapping

health informatics more details view paper
  • Downloaded 374 times
  • Download rankings, all-time:
    • Site-wide: 71,181
    • In health informatics: 243
  • Year to date:
    • Site-wide: 49,145
  • Since beginning of last month:
    • Site-wide: 52,415

Large-scale Genetic Analysis Identifies 66 Novel Loci for Asthma

genetics more details view paper
  • Downloaded 361 times
  • Download rankings, all-time:
    • Site-wide: 73,341
    • In genetics: 3,357
  • Year to date:
    • Site-wide: 107,215
  • Since beginning of last month:
    • Site-wide: 99,959

Genomic epidemiology of the Los Angeles COVID-19 outbreak

epidemiology more details view paper
  • Downloaded 343 times
  • Download rankings, all-time:
    • Site-wide: 76,630
    • In epidemiology: 3,197
  • Year to date:
    • Site-wide: 45,152
  • Since beginning of last month:
    • Site-wide: 43,436

Accurate modeling of replication rates in genome-wide association studies by accounting for winner's curse and study-specific heterogeneity

bioinformatics more details view paper
  • Downloaded 322 times
  • Download rankings, all-time:
    • Site-wide: 80,866
    • In bioinformatics: 7,382
  • Year to date:
    • Site-wide: 39,726
  • Since beginning of last month:
    • Site-wide: 22,206

Robust Mendelian randomization in the presence of residual population stratification, batch effects and horizontal pleiotropy

genetics more details view paper
  • Downloaded 320 times
  • Download rankings, all-time:
    • Site-wide: 81,220
    • In genetics: 3,690
  • Year to date:
    • Site-wide: 36,422
  • Since beginning of last month:
    • Site-wide: 39,795

Expanding COVID-19 symptom screening to retail, restaurants, and schools by preserving privacy using relaxed digital signatures

public and global health more details view paper
  • Downloaded 299 times
  • Download rankings, all-time:
    • Site-wide: 85,567
    • In public and global health: 955
  • Year to date:
    • Site-wide: 58,804
  • Since beginning of last month:
    • Site-wide: 48,718

Leveraging pleiotropy in genome-wide association studies in multiple traits with per trait interpretations

bioinformatics more details view paper
  • Downloaded 240 times
  • Download rankings, all-time:
    • Site-wide: 98,259
    • In bioinformatics: 8,470
  • Year to date:
    • Site-wide: 97,685
  • Since beginning of last month:
    • Site-wide: 93,814

Calling differential DNA methylation at cell-type resolution: addressing misconceptions and best practices

genomics more details view paper
  • Downloaded 184 times
  • Download rankings, all-time:
    • Site-wide: 110,652
    • In genomics: 6,318
  • Year to date:
    • Site-wide: 12,389
  • Since beginning of last month:
    • Site-wide: 14,574

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