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Author: Eleazar Eskin

Rankings

  • All-time downloads: 72,722 (rank: 1,763 )
  • Categories:
    • bioinformatics: 27,923 (rank: 96 )
    • epidemiology: 297 (rank: 17,480 (tie) )
    • genetics: 14,974 (rank: 895 )
    • genomics: 15,241 (rank: 893 )
    • health informatics: 325 (rank: 1,429 (tie) )
    • immunology: 4,369 (rank: 1,309 (tie) )
    • infectious diseases: 4,538 (rank: 6,805 (tie) )
    • microbiology: 3,925 (rank: 2,934 (tie) )
    • public and global health: 262 (rank: 5,987 (tie) )
    • scientific communication and education: 868 (rank: 1,072 (tie) )

Downloads per author, site-wide

Preprints

Challenges and recommendations to improve installability and archival stability of omics computational tools

bioinformatics more details view paper
  • Downloaded 5,342 times
  • Download rankings, all-time:
    • Site-wide: 1,589
    • In bioinformatics: 134
  • Year to date:
    • Site-wide: 30,659
  • Since beginning of last month:
    • Site-wide: 24,684

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
  • Downloaded 4,549 times
  • Download rankings, all-time:
    • Site-wide: 1,978
    • In genomics: 225
  • Year to date:
    • Site-wide: 22,788
  • Since beginning of last month:
    • Site-wide: 16,769

Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing

infectious diseases more details view paper
  • Downloaded 4,538 times
  • Download rankings, all-time:
    • Site-wide: 1,983
    • In infectious diseases: 424
  • Year to date:
    • Site-wide: 1,104
  • Since beginning of last month:
    • Site-wide: 2,062

Local genetic effects on gene expression across 44 human tissues

genomics more details view paper
  • Downloaded 4,411 times
  • Download rankings, all-time:
    • Site-wide: 2,069
    • In genomics: 240
  • Year to date:
    • Site-wide: 85,325
  • Since beginning of last month:
    • Site-wide: 31,531

Profiling immunoglobulin repertoires across multiple human tissues by RNA Sequencing

immunology more details view paper
  • Downloaded 4,369 times
  • Download rankings, all-time:
    • Site-wide: 2,101
    • In immunology: 49
  • Year to date:
    • Site-wide: 15,175
  • Since beginning of last month:
    • Site-wide: 18,243

Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia

microbiology more details view paper
  • Downloaded 3,925 times
  • Download rankings, all-time:
    • Site-wide: 2,444
    • In microbiology: 176
  • Year to date:
    • Site-wide: 36,066
  • Since beginning of last month:
    • Site-wide: 22,028

Word and sentence embedding tools to measure semantic similarity of Gene Ontology terms by their definitions

bioinformatics more details view paper
  • Downloaded 2,983 times
  • Download rankings, all-time:
    • Site-wide: 3,656
    • In bioinformatics: 400
  • Year to date:
    • Site-wide: 15,919
  • Since beginning of last month:
    • Site-wide: 12,010

Distant regulatory effects of genetic variation in multiple human tissues

genomics more details view paper
  • Downloaded 2,736 times
  • Download rankings, all-time:
    • Site-wide: 4,107
    • In genomics: 489
  • Year to date:
    • Site-wide: 66,535
  • Since beginning of last month:
    • Site-wide: 38,454

Comprehensive analysis of RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues

genomics more details view paper
  • Downloaded 2,720 times
  • Download rankings, all-time:
    • Site-wide: 4,143
    • In genomics: 492
  • Year to date:
    • Site-wide: 107,419
  • Since beginning of last month:
    • Site-wide: 59,065

UMI-Reducer: Collapsing duplicate sequencing reads via Unique Molecular Identifiers

bioinformatics more details view paper
  • Downloaded 2,560 times
  • Download rankings, all-time:
    • Site-wide: 4,543
    • In bioinformatics: 526
  • Year to date:
    • Site-wide: 38,964
  • Since beginning of last month:
    • Site-wide: 26,667

Review: Population Structure in Genetic Studies: Confounding Factors and Mixed Models

bioinformatics more details view paper
  • Downloaded 2,453 times
  • Download rankings, all-time:
    • Site-wide: 4,840
    • In bioinformatics: 565
  • Year to date:
    • Site-wide: 31,707
  • Since beginning of last month:
    • Site-wide: 59,845

A comprehensive benchmarking of WGS-based structural variant callers

bioinformatics more details view paper
  • Downloaded 1,898 times
  • Download rankings, all-time:
    • Site-wide: 7,073
    • In bioinformatics: 895
  • Year to date:
    • Site-wide: 3,994
  • Since beginning of last month:
    • Site-wide: 7,818

Widespread allelic heterogeneity in complex traits

genetics more details view paper
  • Downloaded 1,815 times
  • Download rankings, all-time:
    • Site-wide: 7,535
    • In genetics: 374
  • Year to date:
    • Site-wide: 93,055
  • Since beginning of last month:
    • Site-wide: 89,888

Leveraging molecular QTL to understand the genetic architecture of diseases and complex traits

genetics more details view paper
  • Downloaded 1,677 times
  • Download rankings, all-time:
    • Site-wide: 8,523
    • In genetics: 435
  • Year to date:
    • Site-wide: 99,962
  • Since beginning of last month:
    • Site-wide: 71,641

Colocalization of GWAS and eQTL Signals Detects Target Genes

genetics more details view paper
  • Downloaded 1,595 times
  • Download rankings, all-time:
    • Site-wide: 9,210
    • In genetics: 472
  • Year to date:
    • Site-wide: 105,413
  • Since beginning of last month:
    • Site-wide: 65,220

Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology

bioinformatics more details view paper
  • Downloaded 1,418 times
  • Download rankings, all-time:
    • Site-wide: 10,955
    • In bioinformatics: 1,396
  • Year to date:
    • Site-wide: 92,935
  • Since beginning of last month:
    • Site-wide: 77,260

MiCoP: Microbial Community Profiling method for detecting viral and fungal organisms in metagenomic samples

bioinformatics more details view paper
  • Downloaded 1,415 times
  • Download rankings, all-time:
    • Site-wide: 10,985
    • In bioinformatics: 1,401
  • Year to date:
    • Site-wide: 90,120
  • Since beginning of last month:
    • Site-wide: 119,103

Benchmarking of computational error-correction methods for next-generation sequencing data

bioinformatics more details view paper
  • Downloaded 1,388 times
  • Download rankings, all-time:
    • Site-wide: 11,331
    • In bioinformatics: 1,437
  • Year to date:
    • Site-wide: 91,785
  • Since beginning of last month:
    • Site-wide: 32,742

Improved methods for multi-trait fine mapping of pleiotropic risk loci

genetics more details view paper
  • Downloaded 1,175 times
  • Download rankings, all-time:
    • Site-wide: 14,532
    • In genetics: 758
  • Year to date:
    • Site-wide: 113,960
  • Since beginning of last month:
    • Site-wide: 80,187

Genetic variation and gene expression across multiple tissues and developmental stages in a non-human primate

genetics more details view paper
  • Downloaded 1,126 times
  • Download rankings, all-time:
    • Site-wide: 15,500
    • In genetics: 806
  • Year to date:
    • Site-wide: 112,493
  • Since beginning of last month:
    • Site-wide: 117,234

Spatial localization of recent ancestors for admixed individuals

genetics more details view paper
  • Downloaded 1,120 times
  • Download rankings, all-time:
    • Site-wide: 15,613
    • In genetics: 810
  • Year to date:
    • Site-wide: 95,928
  • Since beginning of last month:
    • Site-wide: 109,791

The genetic basis of host choice and resting behavior in the major African malaria vector, Anopheles arabiensis

genetics more details view paper
  • Downloaded 1,105 times
  • Download rankings, all-time:
    • Site-wide: 15,971
    • In genetics: 825
  • Year to date:
    • Site-wide: 64,074
  • Since beginning of last month:
    • Site-wide: 50,301

An Ancestry Based Approach for Detecting Interactions

genetics more details view paper
  • Downloaded 1,087 times
  • Download rankings, all-time:
    • Site-wide: 16,378
    • In genetics: 849
  • Year to date:
    • Site-wide: 54,056
  • Since beginning of last month:
    • Site-wide: 75,727

A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference

bioinformatics more details view paper
  • Downloaded 973 times
  • Download rankings, all-time:
    • Site-wide: 19,305
    • In bioinformatics: 2,383
  • Year to date:
    • Site-wide: 116,026
  • Since beginning of last month:
    • Site-wide: 120,018

Leveraging allele-specific expression to refine fine-mapping for eQTL studies

genetics more details view paper
  • Downloaded 968 times
  • Download rankings, all-time:
    • Site-wide: 19,460
    • In genetics: 986
  • Year to date:
    • Site-wide: 49,273
  • Since beginning of last month:
    • Site-wide: 99,727

HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads

bioinformatics more details view paper
  • Downloaded 959 times
  • Download rankings, all-time:
    • Site-wide: 19,696
    • In bioinformatics: 2,417
  • Year to date:
    • Site-wide: 105,297
  • Since beginning of last month:
    • Site-wide: 59,413

Selection on the FADS region in Europeans

genetics more details view paper
  • Downloaded 944 times
  • Download rankings, all-time:
    • Site-wide: 20,131
    • In genetics: 1,012
  • Year to date:
    • Site-wide: 97,944
  • Since beginning of last month:
    • Site-wide: 77,865

Long single-molecule reads can resolve the complexity of the Influenza virus composed of rare, closely related mutant variants

bioinformatics more details view paper
  • Downloaded 873 times
  • Download rankings, all-time:
    • Site-wide: 22,600
    • In bioinformatics: 2,748
  • Year to date:
    • Site-wide: 65,617
  • Since beginning of last month:
    • Site-wide: 69,222

Improving the usability and comprehensiveness of microbial databases

bioinformatics more details view paper
  • Downloaded 871 times
  • Download rankings, all-time:
    • Site-wide: 22,665
    • In bioinformatics: 2,762
  • Year to date:
    • Site-wide: 51,247
  • Since beginning of last month:
    • Site-wide: 73,240

Addressing the digital divide in contemporary biology: Lessons from teaching UNIX

scientific communication and education more details view paper
  • Downloaded 868 times
  • Download rankings, all-time:
    • Site-wide: 22,772
    • In scientific communication and education: 186
  • Year to date:
    • Site-wide: 53,795
  • Since beginning of last month:
    • Site-wide: 115,762

Rapid cost-effective viral genome sequencing by V-seq

genomics more details view paper
  • Downloaded 825 times
  • Download rankings, all-time:
    • Site-wide: 24,477
    • In genomics: 2,377
  • Year to date:
    • Site-wide: 5,295
  • Since beginning of last month:
    • Site-wide: 25,959

Metalign: Efficient alignment-based metagenomic profiling via containment min hash

bioinformatics more details view paper
  • Downloaded 769 times
  • Download rankings, all-time:
    • Site-wide: 27,017
    • In bioinformatics: 3,208
  • Year to date:
    • Site-wide: 67,470
  • Since beginning of last month:
    • Site-wide: 45,945

The Multivariate Normal Distribution Framework for Analyzing Association Studies

genetics more details view paper
  • Downloaded 699 times
  • Download rankings, all-time:
    • Site-wide: 30,783
    • In genetics: 1,552
  • Year to date:
    • Site-wide: 90,104
  • Since beginning of last month:
    • Site-wide: 59,449

Identifying Causal Variants by Fine Mapping Across Multiple Studies

bioinformatics more details view paper
  • Downloaded 684 times
  • Download rankings, all-time:
    • Site-wide: 31,700
    • In bioinformatics: 3,656
  • Year to date:
    • Site-wide: 37,313
  • Since beginning of last month:
    • Site-wide: 38,401

Evaluating Representations for Gene Ontology Terms

bioinformatics more details view paper
  • Downloaded 672 times
  • Download rankings, all-time:
    • Site-wide: 32,504
    • In bioinformatics: 3,734
  • Year to date:
    • Site-wide: 24,114
  • Since beginning of last month:
    • Site-wide: 27,871

A method to map and interpret pleiotropic loci using summary statistics of multiple traits

bioinformatics more details view paper
  • Downloaded 670 times
  • Download rankings, all-time:
    • Site-wide: 32,579
    • In bioinformatics: 3,741
  • Year to date:
    • Site-wide: 5,480
  • Since beginning of last month:
    • Site-wide: 7,580

Fast and accurate construction of confidence intervals for heritability

genetics more details view paper
  • Downloaded 639 times
  • Download rankings, all-time:
    • Site-wide: 34,746
    • In genetics: 1,738
  • Year to date:
    • Site-wide: 68,238
  • Since beginning of last month:
    • Site-wide: 67,539

Applying meta-analysis to Genotype-Tissue Expression data from multiple tissues to identify eQTLs and increase the number of eGenes

bioinformatics more details view paper
  • Downloaded 618 times
  • Download rankings, all-time:
    • Site-wide: 36,219
    • In bioinformatics: 4,062
  • Year to date:
    • Site-wide: 89,593
  • Since beginning of last month:
    • Site-wide: 120,424

A unifying framework for summary statistic imputation

bioinformatics more details view paper
  • Downloaded 467 times
  • Download rankings, all-time:
    • Site-wide: 50,829
    • In bioinformatics: 5,305
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

Annotating Gene Ontology terms for protein sequences with the Transformer model

bioinformatics more details view paper
  • Downloaded 423 times
  • Download rankings, all-time:
    • Site-wide: 56,529
    • In bioinformatics: 5,749
  • Year to date:
    • Site-wide: 15,532
  • Since beginning of last month:
    • Site-wide: 26,644

Leveraging allelic heterogeneity to increase power of association testing

genetics more details view paper
  • Downloaded 423 times
  • Download rankings, all-time:
    • Site-wide: 56,473
    • In genetics: 2,720
  • Year to date:
    • Site-wide: 88,547
  • Since beginning of last month:
    • Site-wide: 53,360

Large-scale Genetic Analysis Identifies 66 Novel Loci for Asthma

genetics more details view paper
  • Downloaded 348 times
  • Download rankings, all-time:
    • Site-wide: 68,092
    • In genetics: 3,226
  • Year to date:
    • Site-wide: 69,112
  • Since beginning of last month:
    • Site-wide: 52,578

Projecting hospital resource utilization during a surge using parametric bootstrapping

health informatics more details view paper
  • Downloaded 325 times
  • Download rankings, all-time:
    • Site-wide: 71,990
    • In health informatics: 225
  • Year to date:
    • Site-wide: 75,438
  • Since beginning of last month:
    • Site-wide: 42,316

Genomic epidemiology of the Los Angeles COVID-19 outbreak

epidemiology more details view paper
  • Downloaded 297 times
  • Download rankings, all-time:
    • Site-wide: 77,390
    • In epidemiology: 3,137
  • Year to date:
    • Site-wide: 28,518
  • Since beginning of last month:
    • Site-wide: 25,892

Accurate modeling of replication rates in genome-wide association studies by accounting for winner's curse and study-specific heterogeneity

bioinformatics more details view paper
  • Downloaded 264 times
  • Download rankings, all-time:
    • Site-wide: 83,935
    • In bioinformatics: 7,603
  • Year to date:
    • Site-wide: 37,904
  • Since beginning of last month:
    • Site-wide: 59,004

Expanding COVID-19 symptom screening to retail, restaurants, and schools by preserving privacy using relaxed digital signatures

public and global health more details view paper
  • Downloaded 262 times
  • Download rankings, all-time:
    • Site-wide: 84,371
    • In public and global health: 835
  • Year to date:
    • Site-wide: 57,934
  • Since beginning of last month:
    • Site-wide: 34,706

Robust Mendelian randomization in the presence of residual population stratification, batch effects and horizontal pleiotropy

genetics more details view paper
  • Downloaded 253 times
  • Download rankings, all-time:
    • Site-wide: 86,181
    • In genetics: 4,001
  • Year to date:
    • Site-wide: 57,409
  • Since beginning of last month:
    • Site-wide: 20,956

Leveraging pleiotropy in genome-wide association studies in multiple traits with per trait interpretations

bioinformatics more details view paper
  • Downloaded 223 times
  • Download rankings, all-time:
    • Site-wide: 92,428
    • In bioinformatics: 8,145
  • Year to date:
    • Site-wide: 75,462
  • Since beginning of last month:
    • Site-wide: 55,960

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