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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 74,094 bioRxiv papers from 322,357 authors.

Author: Justin M Zook

Rankings

  • All-time downloads: 55,879 (rank: 293 out of 322,407)
  • Categories:
    • bioinformatics: 14,235 (rank: 188 out of 27,897)
    • genetics: 4,844 (rank: 3,100 (tie) out of 31,611)
    • genomics: 36,800 (rank: 153 out of 35,883)

Downloads per author, site-wide

Preprints

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 10,846 times
  • Download rankings, all-time:
    • Site-wide: 125 out of 74,104
    • In genomics: 32 out of 4,902
  • Year to date:
    • Site-wide: 616 out of 74,104
  • Since beginning of last month:
    • Site-wide: 616 out of 74,104

Comparing Variant Call Files for Performance Benchmarking of Next-Generation Sequencing Variant Calling Pipelines

bioinformatics more details view paper
  • Downloaded 6,250 times
  • Download rankings, all-time:
    • Site-wide: 344 out of 74,104
    • In bioinformatics: 60 out of 7,201
  • Year to date:
    • Site-wide: 6,162 out of 74,104
  • Since beginning of last month:
    • Site-wide: 6,162 out of 74,104

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
  • Downloaded 6,049 times
  • Download rankings, all-time:
    • Site-wide: 366 out of 74,104
    • In bioinformatics: 66 out of 7,201
  • Year to date:
    • Site-wide: 248 out of 74,104
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    • Site-wide: 248 out of 74,104

Extensive sequencing of seven human genomes to characterize benchmark reference materials

genomics more details view paper
  • Downloaded 5,881 times
  • Download rankings, all-time:
    • Site-wide: 384 out of 74,104
    • In genomics: 93 out of 4,902
  • Year to date:
    • Site-wide: 10,426 out of 74,104
  • Since beginning of last month:
    • Site-wide: 10,427 out of 74,104

Best Practices for Benchmarking Germline Small Variant Calls in Human Genomes

genomics more details view paper
  • Downloaded 5,133 times
  • Download rankings, all-time:
    • Site-wide: 485 out of 74,104
    • In genomics: 119 out of 4,902
  • Year to date:
    • Site-wide: 502 out of 74,104
  • Since beginning of last month:
    • Site-wide: 502 out of 74,104

An interlaboratory study of complex variant detection

genetics more details view paper
  • Downloaded 3,765 times
  • Download rankings, all-time:
    • Site-wide: 879 out of 74,104
    • In genetics: 80 out of 4,058
  • Year to date:
    • Site-wide: 3,910 out of 74,104
  • Since beginning of last month:
    • Site-wide: 3,910 out of 74,104

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 3,362 times
  • Download rankings, all-time:
    • Site-wide: 1,081 out of 74,104
    • In genomics: 257 out of 4,902
  • Year to date:
    • Site-wide: 1,223 out of 74,104
  • Since beginning of last month:
    • Site-wide: 1,223 out of 74,104

Reproducible integration of multiple sequencing datasets to form high-confidence SNP, indel, and reference calls for five human genome reference materials

genomics more details view paper
  • Downloaded 3,090 times
  • Download rankings, all-time:
    • Site-wide: 1,274 out of 74,104
    • In genomics: 285 out of 4,902
  • Year to date:
    • Site-wide: 5,742 out of 74,104
  • Since beginning of last month:
    • Site-wide: 5,742 out of 74,104

svclassify: a method to establish benchmark structural variant calls

genomics more details view paper
  • Downloaded 2,119 times
  • Download rankings, all-time:
    • Site-wide: 2,472 out of 74,104
    • In genomics: 509 out of 4,902
  • Year to date:
    • Site-wide: 24,351 out of 74,104
  • Since beginning of last month:
    • Site-wide: 24,352 out of 74,104

Efficient chromosome-scale haplotype-resolved assembly of human genomes

bioinformatics more details view paper
  • Downloaded 1,936 times
  • Download rankings, all-time:
    • Site-wide: 2,897 out of 74,104
    • In bioinformatics: 575 out of 7,201
  • Year to date:
    • Site-wide: 1,078 out of 74,104
  • Since beginning of last month:
    • Site-wide: 1,078 out of 74,104

Genome-wide reconstruction of complex structural variants using read clouds

genomics more details view paper
  • Downloaded 1,790 times
  • Download rankings, all-time:
    • Site-wide: 3,301 out of 74,104
    • In genomics: 630 out of 4,902
  • Year to date:
    • Site-wide: 63,004 out of 74,104
  • Since beginning of last month:
    • Site-wide: 62,629 out of 74,104

CrowdVariant: a crowdsourcing approach to classify copy number variants

genomics more details view paper
  • Downloaded 1,225 times
  • Download rankings, all-time:
    • Site-wide: 6,294 out of 74,104
    • In genomics: 1,037 out of 4,902
  • Year to date:
    • Site-wide: 55,462 out of 74,104
  • Since beginning of last month:
    • Site-wide: 55,387 out of 74,104

genomeview - an extensible python-based genomics visualization engine

genomics more details view paper
  • Downloaded 1,111 times
  • Download rankings, all-time:
    • Site-wide: 7,399 out of 74,104
    • In genomics: 1,173 out of 4,902
  • Year to date:
    • Site-wide: 10,021 out of 74,104
  • Since beginning of last month:
    • Site-wide: 10,022 out of 74,104

A Rigorous Interlaboratory Examination of the Need to Confirm NGS-Detected Variants by an Orthogonal Method in Clinical Genetic Testing

genetics more details view paper
  • Downloaded 1,079 times
  • Download rankings, all-time:
    • Site-wide: 7,733 out of 74,104
    • In genetics: 591 out of 4,058
  • Year to date:
    • Site-wide: 17,969 out of 74,104
  • Since beginning of last month:
    • Site-wide: 17,969 out of 74,104

SVCurator: A Crowdsourcing app to visualize evidence of structural variants for the human genome

genomics more details view paper
  • Downloaded 755 times
  • Download rankings, all-time:
    • Site-wide: 13,587 out of 74,104
    • In genomics: 1,835 out of 4,902
  • Year to date:
    • Site-wide: 19,768 out of 74,104
  • Since beginning of last month:
    • Site-wide: 19,768 out of 74,104

svviz: a read viewer for validating structural variants

genomics more details view paper
  • Downloaded 707 times
  • Download rankings, all-time:
    • Site-wide: 14,981 out of 74,104
    • In genomics: 1,951 out of 4,902
  • Year to date:
    • Site-wide: 68,493 out of 74,104
  • Since beginning of last month:
    • Site-wide: 68,603 out of 74,104

A Diploid Assembly-based Benchmark for Variants in the Major Histocompatibility Complex

genomics more details view paper
  • Downloaded 460 times
  • Download rankings, all-time:
    • Site-wide: 26,775 out of 74,104
    • In genomics: 2,814 out of 4,902
  • Year to date:
    • Site-wide: 5,319 out of 74,104
  • Since beginning of last month:
    • Site-wide: 5,319 out of 74,104

High-coverage, long-read sequencing of Han Chinese trio reference samples.

genomics more details view paper
  • Downloaded 321 times
  • Download rankings, all-time:
    • Site-wide: 39,015 out of 74,104
    • In genomics: 3,560 out of 4,902
  • Year to date:
    • Site-wide: 25,458 out of 74,104
  • Since beginning of last month:
    • Site-wide: 25,458 out of 74,104

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