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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 60,233 bioRxiv papers from 267,795 authors.

Author: Justin M Zook

Rankings

  • All-time downloads: 45,098 (rank: 299 out of 267,795)
  • Categories:
    • bioinformatics: 9,100 (rank: 332 out of 23,889)
    • genetics: 4,482 (rank: 2,975 (tie) out of 27,063)
    • genomics: 31,516 (rank: 173 out of 31,251)

Downloads per author, site-wide

Preprints

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 9,284 times
  • Download rankings, all-time:
    • Site-wide: 118 out of 60,233
    • In genomics: 39 out of 4,181
  • Year to date:
    • Site-wide: 16 out of 60,233
  • Since beginning of last month:
    • Site-wide: 82 out of 60,233

Comparing Variant Call Files for Performance Benchmarking of Next-Generation Sequencing Variant Calling Pipelines

bioinformatics more details view paper
  • Downloaded 5,855 times
  • Download rankings, all-time:
    • Site-wide: 293 out of 60,233
    • In bioinformatics: 54 out of 6,078
  • Year to date:
    • Site-wide: 1,774 out of 60,233
  • Since beginning of last month:
    • Site-wide: 2,530 out of 60,233

Extensive sequencing of seven human genomes to characterize benchmark reference materials

genomics more details view paper
  • Downloaded 5,736 times
  • Download rankings, all-time:
    • Site-wide: 308 out of 60,233
    • In genomics: 82 out of 4,181
  • Year to date:
    • Site-wide: 16,644 out of 60,233
  • Since beginning of last month:
    • Site-wide: 15,972 out of 60,233

Best Practices for Benchmarking Germline Small Variant Calls in Human Genomes

genomics more details view paper
  • Downloaded 4,150 times
  • Download rankings, all-time:
    • Site-wide: 561 out of 60,233
    • In genomics: 150 out of 4,181
  • Year to date:
    • Site-wide: 485 out of 60,233
  • Since beginning of last month:
    • Site-wide: 1,633 out of 60,233

An interlaboratory study of complex variant detection

genetics more details view paper
  • Downloaded 3,494 times
  • Download rankings, all-time:
    • Site-wide: 791 out of 60,233
    • In genetics: 77 out of 3,435
  • Year to date:
    • Site-wide: 2,686 out of 60,233
  • Since beginning of last month:
    • Site-wide: 6,991 out of 60,233

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
  • Downloaded 3,245 times
  • Download rankings, all-time:
    • Site-wide: 897 out of 60,233
    • In bioinformatics: 180 out of 6,078
  • Year to date:
    • Site-wide: 131 out of 60,233
  • Since beginning of last month:
    • Site-wide: 16 out of 60,233

Reproducible integration of multiple sequencing datasets to form high-confidence SNP, indel, and reference calls for five human genome reference materials

genomics more details view paper
  • Downloaded 2,812 times
  • Download rankings, all-time:
    • Site-wide: 1,180 out of 60,233
    • In genomics: 275 out of 4,181
  • Year to date:
    • Site-wide: 1,285 out of 60,233
  • Since beginning of last month:
    • Site-wide: 2,655 out of 60,233

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 2,103 times
  • Download rankings, all-time:
    • Site-wide: 1,956 out of 60,233
    • In genomics: 433 out of 4,181
  • Year to date:
    • Site-wide: 306 out of 60,233
  • Since beginning of last month:
    • Site-wide: 274 out of 60,233

svclassify: a method to establish benchmark structural variant calls

genomics more details view paper
  • Downloaded 2,017 times
  • Download rankings, all-time:
    • Site-wide: 2,124 out of 60,233
    • In genomics: 455 out of 4,181
  • Year to date:
    • Site-wide: 25,350 out of 60,233
  • Since beginning of last month:
    • Site-wide: 38,564 out of 60,233

Genome-wide reconstruction of complex structural variants using read clouds

genomics more details view paper
  • Downloaded 1,754 times
  • Download rankings, all-time:
    • Site-wide: 2,699 out of 60,233
    • In genomics: 552 out of 4,181
  • Year to date:
    • Site-wide: 37,470 out of 60,233
  • Since beginning of last month:
    • Site-wide: 38,822 out of 60,233

CrowdVariant: a crowdsourcing approach to classify copy number variants

genomics more details view paper
  • Downloaded 1,177 times
  • Download rankings, all-time:
    • Site-wide: 5,200 out of 60,233
    • In genomics: 893 out of 4,181
  • Year to date:
    • Site-wide: 35,533 out of 60,233
  • Since beginning of last month:
    • Site-wide: 43,699 out of 60,233

A Rigorous Interlaboratory Examination of the Need to Confirm NGS-Detected Variants by an Orthogonal Method in Clinical Genetic Testing

genetics more details view paper
  • Downloaded 988 times
  • Download rankings, all-time:
    • Site-wide: 6,956 out of 60,233
    • In genetics: 551 out of 3,435
  • Year to date:
    • Site-wide: 10,726 out of 60,233
  • Since beginning of last month:
    • Site-wide: 17,833 out of 60,233

genomeview - an extensible python-based genomics visualization engine

genomics more details view paper
  • Downloaded 947 times
  • Download rankings, all-time:
    • Site-wide: 7,407 out of 60,233
    • In genomics: 1,177 out of 4,181
  • Year to date:
    • Site-wide: 11,377 out of 60,233
  • Since beginning of last month:
    • Site-wide: 8,421 out of 60,233

svviz: a read viewer for validating structural variants

genomics more details view paper
  • Downloaded 667 times
  • Download rankings, all-time:
    • Site-wide: 12,578 out of 60,233
    • In genomics: 1,732 out of 4,181
  • Year to date:
    • Site-wide: 57,403 out of 60,233
  • Since beginning of last month:
    • Site-wide: 52,992 out of 60,233

SVCurator: A Crowdsourcing app to visualize evidence of structural variants for the human genome

genomics more details view paper
  • Downloaded 628 times
  • Download rankings, all-time:
    • Site-wide: 13,644 out of 60,233
    • In genomics: 1,825 out of 4,181
  • Year to date:
    • Site-wide: 2,925 out of 60,233
  • Since beginning of last month:
    • Site-wide: 11,816 out of 60,233

High-coverage, long-read sequencing of Han Chinese trio reference samples.

genomics more details view paper
  • Downloaded 241 times
  • Download rankings, all-time:
    • Site-wide: 37,469 out of 60,233
    • In genomics: 3,327 out of 4,181
  • Year to date:
    • Site-wide: 13,803 out of 60,233
  • Since beginning of last month:
    • Site-wide: 25,376 out of 60,233

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