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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 60,233 bioRxiv papers from 267,795 authors.

Author: Luca Pinello

  • ORCiD: http://orcid.org/0000-0003-1109-3823
  • Most recently observed institution: Molecular Pathology Unit & Cancer Center, Massachusetts General Hospital Research Institute and Harvard Medical School, Charlestown, MA; Broad Institute of MIT and Harvard, Cambridge, MA

Rankings

  • All-time downloads: 34,259 (rank: 454 out of 267,795)
  • Categories:
    • bioinformatics: 13,825 (rank: 143 out of 23,889)
    • cell biology: 548 (rank: 5,533 (tie) out of 17,605)
    • genetics: 2,265 (rank: 5,191 (tie) out of 27,063)
    • genomics: 3,621 (rank: 3,672 (tie) out of 31,251)
    • molecular biology: 14,000 (rank: 27 out of 12,052)

Downloads per author, site-wide

Preprints

Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

cell biology more details view paper

No bioRxiv download data for this paper yet.

In vivo CRISPR-Cas gene editing with no detectable genome-wide off-target mutations

molecular biology more details view paper
  • Downloaded 5,147 times
  • Download rankings, all-time:
    • Site-wide: 369 out of 60,233
    • In molecular biology: 7 out of 1,862
  • Year to date:
    • Site-wide: 2,980 out of 60,233
  • Since beginning of last month:
    • Site-wide: 12,601 out of 60,233

Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
  • Downloaded 4,521 times
  • Download rankings, all-time:
    • Site-wide: 467 out of 60,233
    • In bioinformatics: 95 out of 6,078
  • Year to date:
    • Site-wide: 2,578 out of 60,233
  • Since beginning of last month:
    • Site-wide: 6,749 out of 60,233

“Unexpected mutations after CRISPR-Cas9 editing in vivo” are most likely pre-existing sequence variants and not nuclease-induced mutations

molecular biology more details view paper
  • Downloaded 3,748 times
  • Download rankings, all-time:
    • Site-wide: 689 out of 60,233
    • In molecular biology: 15 out of 1,862
  • Year to date:
    • Site-wide: 25,876 out of 60,233
  • Since beginning of last month:
    • Site-wide: 16,944 out of 60,233

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of omics data

genomics more details view paper
  • Downloaded 3,346 times
  • Download rankings, all-time:
    • Site-wide: 854 out of 60,233
    • In genomics: 223 out of 4,181
  • Year to date:
    • Site-wide: 994 out of 60,233
  • Since beginning of last month:
    • Site-wide: 4,579 out of 60,233

High-precision CRISPR-Cas9 base editors with minimized bystander and off-target mutations

molecular biology more details view paper
  • Downloaded 2,796 times
  • Download rankings, all-time:
    • Site-wide: 1,198 out of 60,233
    • In molecular biology: 26 out of 1,862
  • Year to date:
    • Site-wide: 2,496 out of 60,233
  • Since beginning of last month:
    • Site-wide: 9,940 out of 60,233

Assessment of computational methods for the analysis of single-cell ATAC-seq data

bioinformatics more details view paper
  • Downloaded 2,350 times
  • Download rankings, all-time:
    • Site-wide: 1,621 out of 60,233
    • In bioinformatics: 323 out of 6,078
  • Year to date:
    • Site-wide: 238 out of 60,233
  • Since beginning of last month:
    • Site-wide: 12 out of 60,233

Integrated design, execution, and analysis of arrayed and pooled CRISPR genome editing experiments

molecular biology more details view paper
  • Downloaded 2,309 times
  • Download rankings, all-time:
    • Site-wide: 1,667 out of 60,233
    • In molecular biology: 42 out of 1,862
  • Year to date:
    • Site-wide: 10,754 out of 60,233
  • Since beginning of last month:
    • Site-wide: 14,398 out of 60,233

CRISPResso: sequencing analysis toolbox for CRISPR genome editing

bioinformatics more details view paper
  • Downloaded 2,286 times
  • Download rankings, all-time:
    • Site-wide: 1,703 out of 60,233
    • In bioinformatics: 346 out of 6,078
  • Year to date:
    • Site-wide: 22,123 out of 60,233
  • Since beginning of last month:
    • Site-wide: 25,482 out of 60,233

Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk

genetics more details view paper
  • Downloaded 2,265 times
  • Download rankings, all-time:
    • Site-wide: 1,725 out of 60,233
    • In genetics: 164 out of 3,435
  • Year to date:
    • Site-wide: 16,144 out of 60,233
  • Since beginning of last month:
    • Site-wide: 15,453 out of 60,233

AmpUMI: Design and analysis of unique molecular identifiers for deep amplicon sequencing

bioinformatics more details view paper
  • Downloaded 1,519 times
  • Download rankings, all-time:
    • Site-wide: 3,423 out of 60,233
    • In bioinformatics: 692 out of 6,078
  • Year to date:
    • Site-wide: 3,123 out of 60,233
  • Since beginning of last month:
    • Site-wide: 11,134 out of 60,233

CRISPR-SURF: Discovering regulatory elements by deconvolution of CRISPR tiling screen data

bioinformatics more details view paper
  • Downloaded 1,086 times
  • Download rankings, all-time:
    • Site-wide: 5,976 out of 60,233
    • In bioinformatics: 1,127 out of 6,078
  • Year to date:
    • Site-wide: 9,635 out of 60,233
  • Since beginning of last month:
    • Site-wide: 24,658 out of 60,233

Analysis and comparison of genome editing using CRISPResso2

bioinformatics more details view paper
  • Downloaded 975 times
  • Download rankings, all-time:
    • Site-wide: 7,110 out of 60,233
    • In bioinformatics: 1,292 out of 6,078
  • Year to date:
    • Site-wide: 8,122 out of 60,233
  • Since beginning of last month:
    • Site-wide: 22,511 out of 60,233

CRISPRO Identifies Functional Protein Coding Sequences Based on Genome Editing Dense Mutagenesis

bioinformatics more details view paper
  • Downloaded 688 times
  • Download rankings, all-time:
    • Site-wide: 12,042 out of 60,233
    • In bioinformatics: 1,999 out of 6,078
  • Year to date:
    • Site-wide: 18,779 out of 60,233
  • Since beginning of last month:
    • Site-wide: 14,814 out of 60,233

The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during trophectoderm and inner cell mass specification

cell biology more details view paper
  • Downloaded 548 times
  • Download rankings, all-time:
    • Site-wide: 16,412 out of 60,233
    • In cell biology: 670 out of 2,865
  • Year to date:
    • Site-wide: 38,696 out of 60,233
  • Since beginning of last month:
    • Site-wide: 28,364 out of 60,233

Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements

bioinformatics more details view paper
  • Downloaded 400 times
  • Download rankings, all-time:
    • Site-wide: 23,796 out of 60,233
    • In bioinformatics: 3,341 out of 6,078
  • Year to date:
    • Site-wide: 41,452 out of 60,233
  • Since beginning of last month:
    • Site-wide: 26,655 out of 60,233

Forward genetic screen of human transposase genomic rearrangements

genomics more details view paper
  • Downloaded 275 times
  • Download rankings, all-time:
    • Site-wide: 33,940 out of 60,233
    • In genomics: 3,149 out of 4,181
  • Year to date:
    • Site-wide: 50,923 out of 60,233
  • Since beginning of last month:
    • Site-wide: 38,341 out of 60,233

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