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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,900 bioRxiv papers from 321,596 authors.

Author: Luca Pinello

Rankings

  • All-time downloads: 39,471 (rank: 473 out of 321,719)
  • Categories:
    • bioinformatics: 16,526 (rank: 149 out of 27,847)
    • cell biology: 1,961 (rank: 1,300 out of 22,692)
    • genetics: 2,359 (rank: 5,820 (tie) out of 31,598)
    • genomics: 4,124 (rank: 3,827 out of 35,808)
    • molecular biology: 14,501 (rank: 33 out of 15,823)

Downloads per author, site-wide

Preprints

Mechanism of monoallelic expression and allelic rheostat role of DNA methylation

genomics more details view paper

No bioRxiv download data for this paper yet.

In vivo CRISPR-Cas gene editing with no detectable genome-wide off-target mutations

molecular biology more details view paper
  • Downloaded 5,265 times
  • Download rankings, all-time:
    • Site-wide: 460 out of 73,918
    • In molecular biology: 11 out of 2,409
  • Year to date:
    • Site-wide: 19,538 out of 73,918
  • Since beginning of last month:
    • Site-wide: 19,538 out of 73,918

Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
  • Downloaded 4,782 times
  • Download rankings, all-time:
    • Site-wide: 552 out of 73,918
    • In bioinformatics: 109 out of 7,187
  • Year to date:
    • Site-wide: 6,309 out of 73,918
  • Since beginning of last month:
    • Site-wide: 6,309 out of 73,918

Assessment of computational methods for the analysis of single-cell ATAC-seq data

bioinformatics more details view paper
  • Downloaded 4,188 times
  • Download rankings, all-time:
    • Site-wide: 713 out of 73,918
    • In bioinformatics: 138 out of 7,187
  • Year to date:
    • Site-wide: 2,095 out of 73,918
  • Since beginning of last month:
    • Site-wide: 2,095 out of 73,918

“Unexpected mutations after CRISPR-Cas9 editing in vivo” are most likely pre-existing sequence variants and not nuclease-induced mutations

molecular biology more details view paper
  • Downloaded 3,863 times
  • Download rankings, all-time:
    • Site-wide: 833 out of 73,918
    • In molecular biology: 21 out of 2,409
  • Year to date:
    • Site-wide: 20,666 out of 73,918
  • Since beginning of last month:
    • Site-wide: 20,666 out of 73,918

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of omics data

genomics more details view paper
  • Downloaded 3,538 times
  • Download rankings, all-time:
    • Site-wide: 986 out of 73,918
    • In genomics: 239 out of 4,893
  • Year to date:
    • Site-wide: 11,081 out of 73,918
  • Since beginning of last month:
    • Site-wide: 11,081 out of 73,918

High-precision CRISPR-Cas9 base editors with minimized bystander and off-target mutations

molecular biology more details view paper
  • Downloaded 2,923 times
  • Download rankings, all-time:
    • Site-wide: 1,402 out of 73,918
    • In molecular biology: 34 out of 2,409
  • Year to date:
    • Site-wide: 20,454 out of 73,918
  • Since beginning of last month:
    • Site-wide: 20,454 out of 73,918

Integrated design, execution, and analysis of arrayed and pooled CRISPR genome editing experiments

molecular biology more details view paper
  • Downloaded 2,450 times
  • Download rankings, all-time:
    • Site-wide: 1,918 out of 73,918
    • In molecular biology: 52 out of 2,409
  • Year to date:
    • Site-wide: 11,059 out of 73,918
  • Since beginning of last month:
    • Site-wide: 11,059 out of 73,918

CRISPResso: sequencing analysis toolbox for CRISPR genome editing

bioinformatics more details view paper
  • Downloaded 2,410 times
  • Download rankings, all-time:
    • Site-wide: 1,976 out of 73,918
    • In bioinformatics: 392 out of 7,187
  • Year to date:
    • Site-wide: 22,468 out of 73,918
  • Since beginning of last month:
    • Site-wide: 22,468 out of 73,918

Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk

genetics more details view paper
  • Downloaded 2,359 times
  • Download rankings, all-time:
    • Site-wide: 2,058 out of 73,918
    • In genetics: 185 out of 4,052
  • Year to date:
    • Site-wide: 47,117 out of 73,918
  • Since beginning of last month:
    • Site-wide: 47,117 out of 73,918

AmpUMI: Design and analysis of unique molecular identifiers for deep amplicon sequencing

bioinformatics more details view paper
  • Downloaded 1,602 times
  • Download rankings, all-time:
    • Site-wide: 4,000 out of 73,918
    • In bioinformatics: 788 out of 7,187
  • Year to date:
    • Site-wide: 48,641 out of 73,918
  • Since beginning of last month:
    • Site-wide: 48,641 out of 73,918

Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

cell biology more details view paper
  • Downloaded 1,354 times
  • Download rankings, all-time:
    • Site-wide: 5,293 out of 73,918
    • In cell biology: 153 out of 3,650
  • Year to date:
    • Site-wide: 3,612 out of 73,918
  • Since beginning of last month:
    • Site-wide: 3,613 out of 73,918

CRISPR-SURF: Discovering regulatory elements by deconvolution of CRISPR tiling screen data

bioinformatics more details view paper
  • Downloaded 1,209 times
  • Download rankings, all-time:
    • Site-wide: 6,430 out of 73,918
    • In bioinformatics: 1,198 out of 7,187
  • Year to date:
    • Site-wide: 26,319 out of 73,918
  • Since beginning of last month:
    • Site-wide: 26,319 out of 73,918

Analysis and comparison of genome editing using CRISPResso2

bioinformatics more details view paper
  • Downloaded 1,106 times
  • Download rankings, all-time:
    • Site-wide: 7,441 out of 73,918
    • In bioinformatics: 1,324 out of 7,187
  • Year to date:
    • Site-wide: 20,463 out of 73,918
  • Since beginning of last month:
    • Site-wide: 20,463 out of 73,918

CRISPRO Identifies Functional Protein Coding Sequences Based on Genome Editing Dense Mutagenesis

bioinformatics more details view paper
  • Downloaded 771 times
  • Download rankings, all-time:
    • Site-wide: 13,181 out of 73,918
    • In bioinformatics: 2,131 out of 7,187
  • Year to date:
    • Site-wide: 48,897 out of 73,918
  • Since beginning of last month:
    • Site-wide: 48,897 out of 73,918

The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during trophectoderm and inner cell mass specification

cell biology more details view paper
  • Downloaded 607 times
  • Download rankings, all-time:
    • Site-wide: 18,706 out of 73,918
    • In cell biology: 797 out of 3,650
  • Year to date:
    • Site-wide: 35,855 out of 73,918
  • Since beginning of last month:
    • Site-wide: 35,855 out of 73,918

Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements

bioinformatics more details view paper
  • Downloaded 458 times
  • Download rankings, all-time:
    • Site-wide: 26,862 out of 73,918
    • In bioinformatics: 3,646 out of 7,187
  • Year to date:
    • Site-wide: 25,993 out of 73,918
  • Since beginning of last month:
    • Site-wide: 25,993 out of 73,918

Forward genetic screen of human transposase genomic rearrangements

genomics more details view paper
  • Downloaded 300 times
  • Download rankings, all-time:
    • Site-wide: 41,411 out of 73,918
    • In genomics: 3,658 out of 4,893
  • Year to date:
    • Site-wide: 61,774 out of 73,918
  • Since beginning of last month:
    • Site-wide: 61,774 out of 73,918

A saturating mutagenesis CRISPR-Cas9 mediated functional genomic screen identifies cis- and trans-regulatory elements of Oct4 in embryonic stem cells

genomics more details view paper
  • Downloaded 286 times
  • Download rankings, all-time:
    • Site-wide: 43,067 out of 73,918
    • In genomics: 3,759 out of 4,893
  • Year to date:
    • Site-wide: 15,996 out of 73,918
  • Since beginning of last month:
    • Site-wide: 15,996 out of 73,918

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