Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 65,351 bioRxiv papers from 289,484 authors.

Author: Richard Durbin

Rankings

  • All-time downloads: 66,550 (rank: 181 out of 289,484)
  • Categories:
    • bioinformatics: 12,439 (rank: 196 out of 25,218)
    • cell biology: 881 (rank: 3,272 (tie) out of 19,345)
    • evolutionary biology: 8,817 (rank: 62 out of 15,773)
    • genetics: 18,443 (rank: 347 out of 28,760)
    • genomics: 25,970 (rank: 226 out of 32,918)

Downloads per author, site-wide

Preprints

Genome Graphs

bioinformatics more details view paper
  • Downloaded 7,724 times
  • Download rankings, all-time:
    • Site-wide: 188 out of 65,351
    • In bioinformatics: 31 out of 6,476
  • Year to date:
    • Site-wide: 930 out of 65,351
  • Since beginning of last month:
    • Site-wide: 2,085 out of 65,351

Iron Age and Anglo-Saxon genomes from East England reveal British migration history

genetics more details view paper
  • Downloaded 5,406 times
  • Download rankings, all-time:
    • Site-wide: 371 out of 65,351
    • In genetics: 43 out of 3,698
  • Year to date:
    • Site-wide: 9,261 out of 65,351
  • Since beginning of last month:
    • Site-wide: 8,125 out of 65,351

The population history of northeastern Siberia since the Pleistocene

genomics more details view paper
  • Downloaded 5,263 times
  • Download rankings, all-time:
    • Site-wide: 394 out of 65,351
    • In genomics: 102 out of 4,462
  • Year to date:
    • Site-wide: 369 out of 65,351
  • Since beginning of last month:
    • Site-wide: 1,897 out of 65,351

Inferring human population size and separation history from multiple genome sequences

genetics more details view paper
  • Downloaded 4,926 times
  • Download rankings, all-time:
    • Site-wide: 431 out of 65,351
    • In genetics: 48 out of 3,698
  • Year to date:
    • Site-wide: 14,762 out of 65,351
  • Since beginning of last month:
    • Site-wide: 31,289 out of 65,351

A reference panel of 64,976 haplotypes for genotype imputation

genetics more details view paper
  • Downloaded 4,447 times
  • Download rankings, all-time:
    • Site-wide: 534 out of 65,351
    • In genetics: 56 out of 3,698
  • Year to date:
    • Site-wide: 39,756 out of 65,351
  • Since beginning of last month:
    • Site-wide: 40,169 out of 65,351

Insights into human genetic variation and population history from 929 diverse genomes

genomics more details view paper
  • Downloaded 4,331 times
  • Download rankings, all-time:
    • Site-wide: 564 out of 65,351
    • In genomics: 148 out of 4,462
  • Year to date:
    • Site-wide: 109 out of 65,351
  • Since beginning of last month:
    • Site-wide: 90 out of 65,351

Sequence variation aware genome references and read mapping with the variation graph toolkit

genomics more details view paper
  • Downloaded 3,447 times
  • Download rankings, all-time:
    • Site-wide: 870 out of 65,351
    • In genomics: 225 out of 4,462
  • Year to date:
    • Site-wide: 6,253 out of 65,351
  • Since beginning of last month:
    • Site-wide: 17,048 out of 65,351

Efficiently inferring the demographic history of many populations with allele count data

evolutionary biology more details view paper
  • Downloaded 2,890 times
  • Download rankings, all-time:
    • Site-wide: 1,231 out of 65,351
    • In evolutionary biology: 44 out of 4,363
  • Year to date:
    • Site-wide: 2,150 out of 65,351
  • Since beginning of last month:
    • Site-wide: 4,824 out of 65,351

Whole genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

evolutionary biology more details view paper
  • Downloaded 2,862 times
  • Download rankings, all-time:
    • Site-wide: 1,248 out of 65,351
    • In evolutionary biology: 47 out of 4,363
  • Year to date:
    • Site-wide: 11,269 out of 65,351
  • Since beginning of last month:
    • Site-wide: 20,105 out of 65,351

Common genetic variation drives molecular heterogeneity in human iPSCs

genomics more details view paper
  • Downloaded 2,590 times
  • Download rankings, all-time:
    • Site-wide: 1,472 out of 65,351
    • In genomics: 334 out of 4,462
  • Year to date:
    • Site-wide: 34,020 out of 65,351
  • Since beginning of last month:
    • Site-wide: 25,448 out of 65,351

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,834 times
  • Download rankings, all-time:
    • Site-wide: 2,712 out of 65,351
    • In genomics: 544 out of 4,462
  • Year to date:
    • Site-wide: 59,798 out of 65,351
  • Since beginning of last month:
    • Site-wide: 59,105 out of 65,351

Reference-based phasing using the Haplotype Reference Consortium panel

genetics more details view paper
  • Downloaded 1,650 times
  • Download rankings, all-time:
    • Site-wide: 3,256 out of 65,351
    • In genetics: 283 out of 3,698
  • Year to date:
    • Site-wide: 39,997 out of 65,351
  • Since beginning of last month:
    • Site-wide: 47,467 out of 65,351

A High-Quality De Novo Genome Assembly from a Single Mosquito using PacBio Sequencing

genomics more details view paper
  • Downloaded 1,498 times
  • Download rankings, all-time:
    • Site-wide: 3,827 out of 65,351
    • In genomics: 705 out of 4,462
  • Year to date:
    • Site-wide: 1,804 out of 65,351
  • Since beginning of last month:
    • Site-wide: 45,479 out of 65,351

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,176 times
  • Download rankings, all-time:
    • Site-wide: 5,724 out of 65,351
    • In genomics: 971 out of 4,462
  • Year to date:
    • Site-wide: 28,846 out of 65,351
  • Since beginning of last month:
    • Site-wide: 20,547 out of 65,351

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

genomics more details view paper
  • Downloaded 1,172 times
  • Download rankings, all-time:
    • Site-wide: 5,765 out of 65,351
    • In genomics: 974 out of 4,462
  • Year to date:
    • Site-wide: 12,634 out of 65,351
  • Since beginning of last month:
    • Site-wide: 29,655 out of 65,351

Contrasting genome dynamics between domesticated and wild yeasts

genomics more details view paper
  • Downloaded 1,097 times
  • Download rankings, all-time:
    • Site-wide: 6,459 out of 65,351
    • In genomics: 1,061 out of 4,462
  • Year to date:
    • Site-wide: 38,844 out of 65,351
  • Since beginning of last month:
    • Site-wide: 41,940 out of 65,351

Transcriptome Sequencing Reveals Widespread Gene-Gene and Gene-Environment Interactions

genomics more details view paper
  • Downloaded 1,086 times
  • Download rankings, all-time:
    • Site-wide: 6,567 out of 65,351
    • In genomics: 1,075 out of 4,462
  • Year to date:
    • Site-wide: 61,382 out of 65,351
  • Since beginning of last month:
    • Site-wide: 55,830 out of 65,351

souporcell: Robust clustering of single cell RNAseq by genotype and ambient RNA inference without reference genotypes

bioinformatics more details view paper
  • Downloaded 1,084 times
  • Download rankings, all-time:
    • Site-wide: 6,581 out of 65,351
    • In bioinformatics: 1,221 out of 6,476
  • Year to date:
    • Site-wide: 1,530 out of 65,351
  • Since beginning of last month:
    • Site-wide: 3,046 out of 65,351

A direct multi-generational estimate of the human mutation rate from autozygous segments seen in thousands of parentally related individuals

genomics more details view paper
  • Downloaded 1,058 times
  • Download rankings, all-time:
    • Site-wide: 6,843 out of 65,351
    • In genomics: 1,110 out of 4,462
  • Year to date:
    • Site-wide: 56,366 out of 65,351
  • Since beginning of last month:
    • Site-wide: 56,027 out of 65,351

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 968 times
  • Download rankings, all-time:
    • Site-wide: 7,869 out of 65,351
    • In bioinformatics: 1,389 out of 6,476
  • Year to date:
    • Site-wide: 33,077 out of 65,351
  • Since beginning of last month:
    • Site-wide: 43,412 out of 65,351

Detecting archaic introgression without archaic reference genomes

evolutionary biology more details view paper
  • Downloaded 945 times
  • Download rankings, all-time:
    • Site-wide: 8,183 out of 65,351
    • In evolutionary biology: 511 out of 4,363
  • Year to date:
    • Site-wide: 31,633 out of 65,351
  • Since beginning of last month:
    • Site-wide: 31,524 out of 65,351

A haplotype-aware de novo assembly of related individuals using pedigree graph

bioinformatics more details view paper
  • Downloaded 935 times
  • Download rankings, all-time:
    • Site-wide: 8,352 out of 65,351
    • In bioinformatics: 1,463 out of 6,476
  • Year to date:
    • Site-wide: 1,975 out of 65,351
  • Since beginning of last month:
    • Site-wide: 5,767 out of 65,351

Recombination Suppression is Unlikely to Contribute to Speciation in Sympatric Heliconius Butterflies

evolutionary biology more details view paper
  • Downloaded 916 times
  • Download rankings, all-time:
    • Site-wide: 8,626 out of 65,351
    • In evolutionary biology: 555 out of 4,363
  • Year to date:
    • Site-wide: 49,570 out of 65,351
  • Since beginning of last month:
    • Site-wide: 41,568 out of 65,351

Narrow-sense heritability estimation of complex traits using identity-by-descent information.

genetics more details view paper
  • Downloaded 903 times
  • Download rankings, all-time:
    • Site-wide: 8,806 out of 65,351
    • In genetics: 656 out of 3,698
  • Year to date:
    • Site-wide: 16,838 out of 65,351
  • Since beginning of last month:
    • Site-wide: 30,629 out of 65,351

Identifying extrinsic versus intrinsic drivers of variation in cell behaviour in human iPS cell lines from healthy donors

cell biology more details view paper
  • Downloaded 881 times
  • Download rankings, all-time:
    • Site-wide: 9,129 out of 65,351
    • In cell biology: 317 out of 3,142
  • Year to date:
    • Site-wide: 19,186 out of 65,351
  • Since beginning of last month:
    • Site-wide: 34,672 out of 65,351

Purging of deleterious variants due to drift and founder effect in Italian populations with extended autozygosity

evolutionary biology more details view paper
  • Downloaded 840 times
  • Download rankings, all-time:
    • Site-wide: 9,836 out of 65,351
    • In evolutionary biology: 640 out of 4,363
  • Year to date:
    • Site-wide: 48,087 out of 65,351
  • Since beginning of last month:
    • Site-wide: 46,577 out of 65,351

The rate of false polymorphisms introduced when imputing genotypes from global imputation panels

genetics more details view paper
  • Downloaded 708 times
  • Download rankings, all-time:
    • Site-wide: 12,719 out of 65,351
    • In genetics: 889 out of 3,698
  • Year to date:
    • Site-wide: 46,399 out of 65,351
  • Since beginning of last month:
    • Site-wide: 43,313 out of 65,351

Removing reference bias in ancient DNA data analysis by mapping to a sequence variation graph

genomics more details view paper
  • Downloaded 616 times
  • Download rankings, all-time:
    • Site-wide: 15,416 out of 65,351
    • In genomics: 1,978 out of 4,462
  • Year to date:
    • Site-wide: 4,060 out of 65,351
  • Since beginning of last month:
    • Site-wide: 951 out of 65,351

Identifying and removing haplotypic duplication in primary genome assemblies

bioinformatics more details view paper
  • Downloaded 594 times
  • Download rankings, all-time:
    • Site-wide: 16,205 out of 65,351
    • In bioinformatics: 2,517 out of 6,476
  • Year to date:
    • Site-wide: 4,318 out of 65,351
  • Since beginning of last month:
    • Site-wide: 2,396 out of 65,351

Crumble: reference free lossy compression of sequence quality values

bioinformatics more details view paper
  • Downloaded 573 times
  • Download rankings, all-time:
    • Site-wide: 17,019 out of 65,351
    • In bioinformatics: 2,599 out of 6,476
  • Year to date:
    • Site-wide: 52,295 out of 65,351
  • Since beginning of last month:
    • Site-wide: 44,965 out of 65,351

Haplotype-aware graph indexes

bioinformatics more details view paper
  • Downloaded 561 times
  • Download rankings, all-time:
    • Site-wide: 17,538 out of 65,351
    • In bioinformatics: 2,659 out of 6,476
  • Year to date:
    • Site-wide: 4,765 out of 65,351
  • Since beginning of last month:
    • Site-wide: 19,444 out of 65,351

Whole genome view of the consequences of a population bottleneck using 2926 genome sequences from Finland and United Kingdom

genetics more details view paper
  • Downloaded 403 times
  • Download rankings, all-time:
    • Site-wide: 26,059 out of 65,351
    • In genetics: 1,707 out of 3,698
  • Year to date:
    • Site-wide: 58,432 out of 65,351
  • Since beginning of last month:
    • Site-wide: 62,502 out of 65,351

Fast and scalable genome-wide inference of local tree topologies from large number of haplotypes based on tree consistent PBWT data structure

genomics more details view paper
  • Downloaded 402 times
  • Download rankings, all-time:
    • Site-wide: 26,174 out of 65,351
    • In genomics: 2,737 out of 4,462
  • Year to date:
    • Site-wide: 8,314 out of 65,351
  • Since beginning of last month:
    • Site-wide: 13,798 out of 65,351

Pathway based factor analysis of gene expression data produces highly heritable phenotypes that associate with age

genomics more details view paper
  • Downloaded 400 times
  • Download rankings, all-time:
    • Site-wide: 26,264 out of 65,351
    • In genomics: 2,750 out of 4,462
  • Year to date:
    • Site-wide: 63,599 out of 65,351
  • Since beginning of last month:
    • Site-wide: 62,656 out of 65,351

Ancestral hybridisation facilitated species diversification in the Lake Malawi cichlid fish adaptive radiation

evolutionary biology more details view paper
  • Downloaded 364 times
  • Download rankings, all-time:
    • Site-wide: 29,027 out of 65,351
    • In evolutionary biology: 2,194 out of 4,363
  • Year to date:
    • Site-wide: 9,829 out of 65,351
  • Since beginning of last month:
    • Site-wide: 9,070 out of 65,351

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News