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Author: Aaron R. Quinlan

Rankings

  • All-time downloads: 28,174 (rank: 1,678 out of 394,350)
  • Categories:
    • bioinformatics: 14,915 (rank: 322 out of 33,526)
    • cancer biology: 164 (rank: 23,343 (tie) out of 27,342)
    • evolutionary biology: 1,543 (rank: 2,798 (tie) out of 20,148)
    • genetics: 2,945 (rank: 5,426 (tie) out of 36,145)
    • genomics: 8,607 (rank: 1,788 out of 41,909)

Downloads per author, site-wide

Preprints

SpeedSeq: Ultra-fast personal genome analysis and interpretation

bioinformatics more details view paper
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Poretools: a toolkit for analyzing nanopore sequence data

bioinformatics more details view paper
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    • In bioinformatics: 205 out of 8,652
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Efficient genotype compression and analysis of large genetic variation datasets

genomics more details view paper
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A map of constrained coding regions in the human genome.

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Indexcov: fast coverage quality control for whole-genome sequencing

genomics more details view paper
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    • In genomics: 868 out of 5,819
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GIGGLE: a search engine for large-scale integrated genome analysis

bioinformatics more details view paper
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    • In bioinformatics: 1,058 out of 8,652
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Fine-mapping identifies causal variants for RA and T1D in DNASE1L3, SIRPG, MEG3, TNFAIP3 and CD28/CTLA4 loci

genetics more details view paper
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    • In genetics: 496 out of 4,737
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Large, three-generation CEPH families reveal post-zygotic mosaicism and variability in germline mutation accumulation

genetics more details view paper
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    • In genetics: 548 out of 4,737
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Vcfanno: fast, flexible annotation of genetic variants

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    • In bioinformatics: 1,439 out of 8,652
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    • Site-wide: 38,742 out of 92,316

Long read sequencing reveals poxvirus evolution through rapid homogenization of gene arrays

evolutionary biology more details view paper
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    • In evolutionary biology: 539 out of 5,599
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    • Site-wide: 82,943 out of 92,316

mosdepth: quick coverage calculation for genomes and exomes

bioinformatics more details view paper
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    • In bioinformatics: 2,270 out of 8,652
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Co-expression patterns define epigenetic regulators associated with neurological dysfunction

genomics more details view paper
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    • In genomics: 2,421 out of 5,819
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duphold: scalalable, depth-based annotation and curation of high-confidence structural variant calls.

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    • In bioinformatics: 3,608 out of 8,652
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    • Site-wide: 51,391 out of 92,316

hts-nim: scripting high-performance genomic analyses

bioinformatics more details view paper
  • Downloaded 565 times
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    • In bioinformatics: 3,743 out of 8,652
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    • Site-wide: 70,476 out of 92,316
  • Since beginning of last month:
    • Site-wide: 48,316 out of 92,316

SV-plaudit: A cloud-based framework for manually curating thousands of structural variants

bioinformatics more details view paper
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    • In bioinformatics: 4,045 out of 8,652
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    • Site-wide: 74,969 out of 92,316

XPRESSyourself: Enhancing, Standardizing, and Automating Ribosome Profiling Computational Analyses Yields Improved Insight into Data

bioinformatics more details view paper
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    • In bioinformatics: 4,124 out of 8,652
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Endless Conflicts: Detecting Molecular Arms Races in Mammalian Genomes

evolutionary biology more details view paper
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    • In evolutionary biology: 2,594 out of 5,599
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Regulatory Sharing Between Estrogen Receptor α Bound Enhancers

genetics more details view paper
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    • In genetics: 3,286 out of 4,737
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    • Site-wide: 63,082 out of 92,316

OncoGEMINI: Software for Investigating Tumor Variants From Multiple Biopsies With Integrated Cancer Annotations

cancer biology more details view paper
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    • In cancer biology: 2,619 out of 3,262
  • Year to date:
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  • Since beginning of last month:
    • Site-wide: 44,498 out of 92,316

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