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Author: Andrei Zinovyev

Rankings

  • All-time downloads: 14,354 (rank: 11,039 )
  • Categories:
    • bioinformatics: 1,841 (rank: 7,271 (tie) )
    • cancer biology: 848 (rank: 8,290 (tie) )
    • genetics: 662 (rank: 20,084 (tie) )
    • genomics: 4,421 (rank: 5,038 (tie) )
    • systems biology: 6,582 (rank: 387 )

Downloads per author, site-wide

Preprints

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of omics data

genomics more details view paper
  • Downloaded 3,848 times
  • Download rankings, all-time:
    • Site-wide: 2,521
    • In genomics: 307
  • Year to date:
    • Site-wide: 26,282
  • Since beginning of last month:
    • Site-wide: 27,014

The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease

systems biology more details view paper
  • Downloaded 1,451 times
  • Download rankings, all-time:
    • Site-wide: 10,571
    • In systems biology: 210
  • Year to date:
    • Site-wide: 21,406
  • Since beginning of last month:
    • Site-wide: 29,758

Transcriptional programs define intratumoral heterogeneity of Ewing sarcoma at single cell resolution

cancer biology more details view paper
  • Downloaded 848 times
  • Download rankings, all-time:
    • Site-wide: 23,558
    • In cancer biology: 588
  • Year to date:
    • Site-wide: 25,799
  • Since beginning of last month:
    • Site-wide: 80,922

Determining the optimal number of independent components for reproducible transcriptomic data analysis

bioinformatics more details view paper
  • Downloaded 819 times
  • Download rankings, all-time:
    • Site-wide: 24,729
    • In bioinformatics: 2,989
  • Year to date:
    • Site-wide: 34,271
  • Since beginning of last month:
    • Site-wide: 47,354

Signalling maps in cancer research: construction and data analysis

systems biology more details view paper
  • Downloaded 767 times
  • Download rankings, all-time:
    • Site-wide: 27,086
    • In systems biology: 605
  • Year to date:
    • Site-wide: 73,975
  • Since beginning of last month:
    • Site-wide: 86,816

Metabolic and signalling network map integration: application to cross-talk studies and omics data analysis in cancer

systems biology more details view paper
  • Downloaded 765 times
  • Download rankings, all-time:
    • Site-wide: 27,175
    • In systems biology: 609
  • Year to date:
    • Site-wide: 30,593
  • Since beginning of last month:
    • Site-wide: 28,977

PhysiBoSS: a multi-scale agent based modelling framework integrating physical dimension and cell signalling

systems biology more details view paper
  • Downloaded 743 times
  • Download rankings, all-time:
    • Site-wide: 28,345
    • In systems biology: 647
  • Year to date:
    • Site-wide: 97,054
  • Since beginning of last month:
    • Site-wide: 45,582

Inferring hidden causal relations between pathway members using reduced Google matrix of directed biological networks

systems biology more details view paper
  • Downloaded 689 times
  • Download rankings, all-time:
    • Site-wide: 31,349
    • In systems biology: 732
  • Year to date:
    • Site-wide: 40,644
  • Since beginning of last month:
    • Site-wide: 69,939

Predicting genetic interactions from Boolean models of biological networks

genetics more details view paper
  • Downloaded 662 times
  • Download rankings, all-time:
    • Site-wide: 33,107
    • In genetics: 1,656
  • Year to date:
    • Site-wide: 81,466
  • Since beginning of last month:
    • Site-wide: 95,742

Stabilized Independent Component Analysis outperforms other methods in finding reproducible signals in tumoral transcriptomes

systems biology more details view paper
  • Downloaded 600 times
  • Download rankings, all-time:
    • Site-wide: 37,587
    • In systems biology: 889
  • Year to date:
    • Site-wide: 57,326
  • Since beginning of last month:
    • Site-wide: 118,789

Independent component analysis provides clinically relevant insights into the biology of melanoma patients

genomics more details view paper
  • Downloaded 573 times
  • Download rankings, all-time:
    • Site-wide: 39,874
    • In genomics: 3,354
  • Year to date:
    • Site-wide: 80,765
  • Since beginning of last month:
    • Site-wide: 74,599

Calculating biological module enrichment or depletion and visualizing data on large-scale molecular maps with ACSNMineR and RNaviCell R packages

bioinformatics more details view paper
  • Downloaded 564 times
  • Download rankings, all-time:
    • Site-wide: 40,623
    • In bioinformatics: 4,449
  • Year to date:
    • Site-wide: 72,321
  • Since beginning of last month:
    • Site-wide: 76,103

Identification of microRNA clusters cooperatively acting on Epithelial to Mesenchymal Transition in Triple Negative Breast Cancer

systems biology more details view paper
  • Downloaded 466 times
  • Download rankings, all-time:
    • Site-wide: 50,978
    • In systems biology: 1,249
  • Year to date:
    • Site-wide: 100,699
  • Since beginning of last month:
    • Site-wide: 93,248

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

bioinformatics more details view paper
  • Downloaded 458 times
  • Download rankings, all-time:
    • Site-wide: 51,952
    • In bioinformatics: 5,421
  • Year to date:
    • Site-wide: 56,405
  • Since beginning of last month:
    • Site-wide: 85,749

Application of Atlas of Cancer Signalling Network in pre-clinical studies

systems biology more details view paper
  • Downloaded 337 times
  • Download rankings, all-time:
    • Site-wide: 70,032
    • In systems biology: 1,732
  • Year to date:
    • Site-wide: 50,919
  • Since beginning of last month:
    • Site-wide: 99,315

Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network

systems biology more details view paper
  • Downloaded 317 times
  • Download rankings, all-time:
    • Site-wide: 73,456
    • In systems biology: 1,811
  • Year to date:
    • Site-wide: 49,835
  • Since beginning of last month:
    • Site-wide: 112,410

Exact calculation of stationary solution and parameter sensitivity analysis of stochastic continuous time Boolean models

systems biology more details view paper
  • Downloaded 245 times
  • Download rankings, all-time:
    • Site-wide: 87,923
    • In systems biology: 2,112
  • Year to date:
    • Site-wide: 63,349
  • Since beginning of last month:
    • Site-wide: 112,642

Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)

systems biology more details view paper
  • Downloaded 202 times
  • Download rankings, all-time:
    • Site-wide: 97,056
    • In systems biology: 2,294
  • Year to date:
    • Site-wide: 85,644
  • Since beginning of last month:
    • Site-wide: 118,963

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