Author: Joseph R. Ecker

Downloads per author, site-wide

Preprints

SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq

• Downloaded 8,363 times
• Download rankings, all-time:
  • Site-wide: 882
  • In bioinformatics: 53
• Year to date:
  • Site-wide: 688
• Since beginning of last month:
  • Site-wide: 1,375

Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

• Downloaded 6,768 times
• Download rankings, all-time:
  • Site-wide: 1,144
  • In bioinformatics: 81
• Year to date:
  • Site-wide: 36,867
• Since beginning of last month:
  • Site-wide: 43,707

High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell

• Downloaded 4,715 times
• Download rankings, all-time:
  • Site-wide: 1,867
  • In genomics: 209
• Year to date:
  • Site-wide: 79,535
• Since beginning of last month:
  • Site-wide: 64,954

Systematic mapping of chromatin state landscapes during mouse development

• Downloaded 4,534 times
• Download rankings, all-time:
  • Site-wide: 1,975
  • In genomics: 227
• Year to date:
  • Site-wide: 15,041
• Since beginning of last month:
  • Site-wide: 35,145

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

• Downloaded 4,436 times
• Download rankings, all-time:
  • Site-wide: 2,043
  • In neuroscience: 126
• Year to date:
  • Site-wide: 1,447
• Since beginning of last month:
  • Site-wide: 1,882

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

• Downloaded 3,778 times
• Download rankings, all-time:
  • Site-wide: 2,573
  • In neuroscience: 191
• Year to date:
  • Site-wide: None
• Since beginning of last month:
  • Site-wide: 3,771

DNA Methylation Atlas of the Mouse Brain at Single-Cell Resolution

• Downloaded 3,223 times
• Download rankings, all-time:
  • Site-wide: 3,272
  • In genomics: 390
• Year to date:
  • Site-wide: 2,306
• Since beginning of last month:
  • Site-wide: 3,362

A multimodal cell census and atlas of the mammalian primary motor cortex

• Downloaded 2,908 times
• Download rankings, all-time:
  • Site-wide: 3,750
  • In neuroscience: 327
• Year to date:
  • Site-wide: 1,498
• Since beginning of last month:
  • Site-wide: 1,332

Single nucleus multi-omics links human cortical cell regulatory genome diversity to disease risk variants

• Downloaded 2,893 times
• Download rankings, all-time:
  • Site-wide: 3,777
  • In genomics: 454
• Year to date:
  • Site-wide: 4,491
• Since beginning of last month:
  • Site-wide: 7,203

The complex architecture and epigenomic impact of plant T-DNA insertions

• Downloaded 2,516 times
• Download rankings, all-time:
  • Site-wide: 4,625
  • In plant biology: 32
• Year to date:
  • Site-wide: 39,102
• Since beginning of last month:
  • Site-wide: 27,637

Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus

• Downloaded 1,840 times
• Download rankings, all-time:
  • Site-wide: 7,363
  • In genomics: 840
• Year to date:
  • Site-wide: 27,396
• Since beginning of last month:
  • Site-wide: 83,741

Multi-omic profiling of transcriptome and DNA methylome in single nuclei with molecular partitioning

• Downloaded 1,750 times
• Download rankings, all-time:
  • Site-wide: 7,921
  • In genomics: 904
• Year to date:
  • Site-wide: 20,422
• Since beginning of last month:
  • Site-wide: 31,922

Genomic decoding of neuronal depolarization by stimulus-specific NPAS4 heterodimers

• Downloaded 1,712 times
• Download rankings, all-time:
  • Site-wide: 8,177
  • In neuroscience: 876
• Year to date:
  • Site-wide: 51,909
• Since beginning of last month:
  • Site-wide: 39,890

Single-cell multi-omic profiling of chromatin conformation and DNA methylome

• Downloaded 1,459 times
• Download rankings, all-time:
  • Site-wide: 10,414
  • In genomics: 1,187
• Year to date:
  • Site-wide: 23,535
• Since beginning of last month:
  • Site-wide: 76,648

Auxin-sensitive Aux/IAA proteins mediate drought tolerance in Arabidopsis by regulating glucosinolate levels

• Downloaded 1,146 times
• Download rankings, all-time:
  • Site-wide: 14,991
  • In plant biology: 200
• Year to date:
  • Site-wide: 48,935
• Since beginning of last month:
  • Site-wide: 67,854

Epigenomic Diversity of Cortical Projection Neurons in the Mouse Brain

• Downloaded 1,079 times
• Download rankings, all-time:
  • Site-wide: 16,451
  • In neuroscience: 2,096
• Year to date:
  • Site-wide: 11,488
• Since beginning of last month:
  • Site-wide: 15,281

Integrated Multi-omic Framework of the Plant Response to Jasmonic Acid

• Downloaded 991 times
• Download rankings, all-time:
  • Site-wide: 18,694
  • In plant biology: 299
• Year to date:
  • Site-wide: 43,627
• Since beginning of last month:
  • Site-wide: 40,141

Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons

• Downloaded 975 times
• Download rankings, all-time:
  • Site-wide: 19,099
  • In neuroscience: 2,481
• Year to date:
  • Site-wide: 78,961
• Since beginning of last month:
  • Site-wide: 93,087

The Arabidopsis Auxin F-box proteins AFB4 and AFB5 are Required for Response to the Synthetic Auxin Picloram

• Downloaded 859 times
• Download rankings, all-time:
  • Site-wide: 22,949
  • In plant biology: 400
• Year to date:
  • Site-wide: 52,007
• Since beginning of last month:
  • Site-wide: 96,798

PHYTOCHROME INTERACTING FACTORs trigger environmentally responsive chromatin dynamics

• Downloaded 632 times
• Download rankings, all-time:
  • Site-wide: 34,933
  • In genomics: 3,076
• Year to date:
  • Site-wide: 17,676
• Since beginning of last month:
  • Site-wide: 17,801

Genome and time-of-day transcriptome of Wolffia australiana link morphological extreme minimization with un-gated plant growth

• Downloaded 625 times
• Download rankings, all-time:
  • Site-wide: 35,519
  • In plant biology: 759
• Year to date:
  • Site-wide: 12,229
• Since beginning of last month:
  • Site-wide: 20,208

Single nucleus multi-omics regulatory atlas of the murine pituitary

• Downloaded 620 times
• Download rankings, all-time:
  • Site-wide: 35,823
  • In cell biology: 1,481
• Year to date:
  • Site-wide: 19,839
• Since beginning of last month:
  • Site-wide: 10,447

Polycomb-mediated repression compensates for loss of postnatal DNA methylation in excitatory neurons

• Downloaded 553 times
• Download rankings, all-time:
  • Site-wide: 41,418
  • In neuroscience: 6,089
• Year to date:
  • Site-wide: 20,353
• Since beginning of last month:
  • Site-wide: 49,520

Common alleles of CMT2 and NRPE1 are major determinants of de novo DNA methylation variation in Arabidopsis thaliana

• Downloaded 514 times
• Download rankings, all-time:
  • Site-wide: 45,180
  • In genomics: 3,698
• Year to date:
  • Site-wide: 31,748
• Since beginning of last month:
  • Site-wide: 41,087

Loss of Dnmt3a dependent methylation in inhibitory neurons impairs neural function through a mechanism that impacts Rett syndrome

• Downloaded 365 times
• Download rankings, all-time:
  • Site-wide: 64,799
  • In neuroscience: 10,027
• Year to date:
  • Site-wide: None
• Since beginning of last month:
  • Site-wide: 119,245

A new plant-specific syntaxin-6 protein contributes to the intracytoplasmic route for begomoviruses

• Downloaded 365 times
• Download rankings, all-time:
  • Site-wide: 64,772
  • In plant biology: 1,688
• Year to date:
  • Site-wide: 63,672
• Since beginning of last month:
  • Site-wide: 46,150