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Author: Joseph R. Ecker

Rankings

  • All-time downloads: 59,619 (rank: 2,102 )
  • Categories:
    • bioinformatics: 15,131 (rank: 355 )
    • cell biology: 620 (rank: 13,145 (tie) )
    • genomics: 21,560 (rank: 457 )
    • neuroscience: 15,806 (rank: 416 )
    • plant biology: 6,502 (rank: 131 )

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Preprints

SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq

bioinformatics more details view paper
  • Downloaded 8,363 times
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    • Site-wide: 882
    • In bioinformatics: 53
  • Year to date:
    • Site-wide: 688
  • Since beginning of last month:
    • Site-wide: 1,375

Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

bioinformatics more details view paper
  • Downloaded 6,768 times
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    • Site-wide: 1,144
    • In bioinformatics: 81
  • Year to date:
    • Site-wide: 36,867
  • Since beginning of last month:
    • Site-wide: 43,707

High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell

genomics more details view paper
  • Downloaded 4,715 times
  • Download rankings, all-time:
    • Site-wide: 1,867
    • In genomics: 209
  • Year to date:
    • Site-wide: 79,535
  • Since beginning of last month:
    • Site-wide: 64,954

Systematic mapping of chromatin state landscapes during mouse development

genomics more details view paper
  • Downloaded 4,534 times
  • Download rankings, all-time:
    • Site-wide: 1,975
    • In genomics: 227
  • Year to date:
    • Site-wide: 15,041
  • Since beginning of last month:
    • Site-wide: 35,145

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 4,436 times
  • Download rankings, all-time:
    • Site-wide: 2,043
    • In neuroscience: 126
  • Year to date:
    • Site-wide: 1,447
  • Since beginning of last month:
    • Site-wide: 1,882

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

neuroscience more details view paper
  • Downloaded 3,778 times
  • Download rankings, all-time:
    • Site-wide: 2,573
    • In neuroscience: 191
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 3,771

DNA Methylation Atlas of the Mouse Brain at Single-Cell Resolution

genomics more details view paper
  • Downloaded 3,223 times
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    • Site-wide: 3,272
    • In genomics: 390
  • Year to date:
    • Site-wide: 2,306
  • Since beginning of last month:
    • Site-wide: 3,362

A multimodal cell census and atlas of the mammalian primary motor cortex

neuroscience more details view paper
  • Downloaded 2,908 times
  • Download rankings, all-time:
    • Site-wide: 3,750
    • In neuroscience: 327
  • Year to date:
    • Site-wide: 1,498
  • Since beginning of last month:
    • Site-wide: 1,332

Single nucleus multi-omics links human cortical cell regulatory genome diversity to disease risk variants

genomics more details view paper
  • Downloaded 2,893 times
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    • Site-wide: 3,777
    • In genomics: 454
  • Year to date:
    • Site-wide: 4,491
  • Since beginning of last month:
    • Site-wide: 7,203

The complex architecture and epigenomic impact of plant T-DNA insertions

plant biology more details view paper
  • Downloaded 2,516 times
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    • Site-wide: 4,625
    • In plant biology: 32
  • Year to date:
    • Site-wide: 39,102
  • Since beginning of last month:
    • Site-wide: 27,637

Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus

genomics more details view paper
  • Downloaded 1,840 times
  • Download rankings, all-time:
    • Site-wide: 7,363
    • In genomics: 840
  • Year to date:
    • Site-wide: 27,396
  • Since beginning of last month:
    • Site-wide: 83,741

Multi-omic profiling of transcriptome and DNA methylome in single nuclei with molecular partitioning

genomics more details view paper
  • Downloaded 1,750 times
  • Download rankings, all-time:
    • Site-wide: 7,921
    • In genomics: 904
  • Year to date:
    • Site-wide: 20,422
  • Since beginning of last month:
    • Site-wide: 31,922

Genomic decoding of neuronal depolarization by stimulus-specific NPAS4 heterodimers

neuroscience more details view paper
  • Downloaded 1,712 times
  • Download rankings, all-time:
    • Site-wide: 8,177
    • In neuroscience: 876
  • Year to date:
    • Site-wide: 51,909
  • Since beginning of last month:
    • Site-wide: 39,890

Single-cell multi-omic profiling of chromatin conformation and DNA methylome

genomics more details view paper
  • Downloaded 1,459 times
  • Download rankings, all-time:
    • Site-wide: 10,414
    • In genomics: 1,187
  • Year to date:
    • Site-wide: 23,535
  • Since beginning of last month:
    • Site-wide: 76,648

Auxin-sensitive Aux/IAA proteins mediate drought tolerance in Arabidopsis by regulating glucosinolate levels

plant biology more details view paper
  • Downloaded 1,146 times
  • Download rankings, all-time:
    • Site-wide: 14,991
    • In plant biology: 200
  • Year to date:
    • Site-wide: 48,935
  • Since beginning of last month:
    • Site-wide: 67,854

Epigenomic Diversity of Cortical Projection Neurons in the Mouse Brain

neuroscience more details view paper
  • Downloaded 1,079 times
  • Download rankings, all-time:
    • Site-wide: 16,451
    • In neuroscience: 2,096
  • Year to date:
    • Site-wide: 11,488
  • Since beginning of last month:
    • Site-wide: 15,281

Integrated Multi-omic Framework of the Plant Response to Jasmonic Acid

plant biology more details view paper
  • Downloaded 991 times
  • Download rankings, all-time:
    • Site-wide: 18,694
    • In plant biology: 299
  • Year to date:
    • Site-wide: 43,627
  • Since beginning of last month:
    • Site-wide: 40,141

Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons

neuroscience more details view paper
  • Downloaded 975 times
  • Download rankings, all-time:
    • Site-wide: 19,099
    • In neuroscience: 2,481
  • Year to date:
    • Site-wide: 78,961
  • Since beginning of last month:
    • Site-wide: 93,087

The Arabidopsis Auxin F-box proteins AFB4 and AFB5 are Required for Response to the Synthetic Auxin Picloram

plant biology more details view paper
  • Downloaded 859 times
  • Download rankings, all-time:
    • Site-wide: 22,949
    • In plant biology: 400
  • Year to date:
    • Site-wide: 52,007
  • Since beginning of last month:
    • Site-wide: 96,798

PHYTOCHROME INTERACTING FACTORs trigger environmentally responsive chromatin dynamics

genomics more details view paper
  • Downloaded 632 times
  • Download rankings, all-time:
    • Site-wide: 34,933
    • In genomics: 3,076
  • Year to date:
    • Site-wide: 17,676
  • Since beginning of last month:
    • Site-wide: 17,801

Genome and time-of-day transcriptome of Wolffia australiana link morphological extreme minimization with un-gated plant growth

plant biology more details view paper
  • Downloaded 625 times
  • Download rankings, all-time:
    • Site-wide: 35,519
    • In plant biology: 759
  • Year to date:
    • Site-wide: 12,229
  • Since beginning of last month:
    • Site-wide: 20,208

Single nucleus multi-omics regulatory atlas of the murine pituitary

cell biology more details view paper
  • Downloaded 620 times
  • Download rankings, all-time:
    • Site-wide: 35,823
    • In cell biology: 1,481
  • Year to date:
    • Site-wide: 19,839
  • Since beginning of last month:
    • Site-wide: 10,447

Polycomb-mediated repression compensates for loss of postnatal DNA methylation in excitatory neurons

neuroscience more details view paper
  • Downloaded 553 times
  • Download rankings, all-time:
    • Site-wide: 41,418
    • In neuroscience: 6,089
  • Year to date:
    • Site-wide: 20,353
  • Since beginning of last month:
    • Site-wide: 49,520

Common alleles of CMT2 and NRPE1 are major determinants of de novo DNA methylation variation in Arabidopsis thaliana

genomics more details view paper
  • Downloaded 514 times
  • Download rankings, all-time:
    • Site-wide: 45,180
    • In genomics: 3,698
  • Year to date:
    • Site-wide: 31,748
  • Since beginning of last month:
    • Site-wide: 41,087

Loss of Dnmt3a dependent methylation in inhibitory neurons impairs neural function through a mechanism that impacts Rett syndrome

neuroscience more details view paper
  • Downloaded 365 times
  • Download rankings, all-time:
    • Site-wide: 64,799
    • In neuroscience: 10,027
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 119,245

A new plant-specific syntaxin-6 protein contributes to the intracytoplasmic route for begomoviruses

plant biology more details view paper
  • Downloaded 365 times
  • Download rankings, all-time:
    • Site-wide: 64,772
    • In plant biology: 1,688
  • Year to date:
    • Site-wide: 63,672
  • Since beginning of last month:
    • Site-wide: 46,150

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