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Author: Vaughn S Cooper

Rankings

  • All-time downloads: 12,981 (rank: 12,085 (tie) )
  • Categories:
    • evolutionary biology: 6,077 (rank: 369 )
    • genetics: 909 (rank: 15,444 (tie) )
    • microbiology: 5,995 (rank: 1,770 )

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Preprints

Polygenic adaptation, clonal interference, and the evolution of mutators in experimental Pseudomonas aeruginosa populations

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Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle

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SARS-CoV-2 genome evolution exposes early human adaptations

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The rate and molecular spectrum of spontaneous mutations in the GC-rich multi-chromosome genome of Burkholderia cenocepacia

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Comprehensive analysis of horizontal gene transfer among multidrug-resistant bacterial pathogens in a single hospital

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Host-selected mutations converging on a global regulator drive an adaptive leap by bacteria to symbiosis

evolutionary biology more details view paper
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EvolvingSTEM: A microbial evolution-in-action curriculum that enhances learning of evolutionary biology and biotechnology

evolutionary biology more details view paper
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The Pseudomonas aeruginosa Wsp pathway undergoes positive evolutionary selection during chronic infection

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Diverse phenotypic and genetic responses to short-term selection in evolving Escherichia coli populations

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Bacterial community profiles and Vibrio parahaemolyticus abundance in individual oysters and their association with estuarine ecology

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Parallel evolution of two clades of a major Atlantic endemic Vibrio parahaemolyticus pathogen lineage by independent acquisition of related pathogenicity islands

evolutionary biology more details view paper
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Periodic variation of mutation rates in bacterial genomes associated with replication timing

genetics more details view paper
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Experimental Evolution in vivo to Identify Selective Pressures During Pneumococcal Colonization

microbiology more details view paper
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Evolution and adaptation of Pseudomonas aeruginosa in the paranasal sinuses of people with cystic fibrosis

microbiology more details view paper
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Genome-wide biases in the rate and molecular spectrum of spontaneous mutations in Vibrio cholerae and Vibrio fischeri

genetics more details view paper
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The roles of history, chance, and natural selection in the evolution of antibiotic resistance

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    • In evolutionary biology: 3,580
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Negative frequency-dependent selection maintains coexisting genotypes during fluctuating selection

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Mutations that improve the efficiency of a weak-link enzyme are rare compared to adaptive mutations elsewhere in the genome

evolutionary biology more details view paper
  • Downloaded 364 times
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    • In evolutionary biology: 3,661
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Altered Nucleoprotein Binding to Influenza Virus RNA Impacts Packaging Efficiency and Replication

microbiology more details view paper
  • Downloaded 363 times
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    • In microbiology: 4,282
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The fitness effects of spontaneous mutations nearly unseen by selection in a bacterium with multiple chromosomes

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Parallel evolution of tobramycin resistance across species and environments

microbiology more details view paper
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One gene, multiple ecological strategies: a biofilm regulator is a capacitor for sustainable diversity

microbiology more details view paper
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Genomic and chemical diversity of Bacillus subtilis secondary metabolites against plant pathogenic fungi

microbiology more details view paper
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Quantitative mapping of mRNA 3′ ends in Pseudomonas aeruginosa reveals putative riboregulators and a pervasive role for transcription termination in response to azithromycin

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Quorum sensing provides a molecular mechanism for evolution to tune and maintain investment in cooperation

evolutionary biology more details view paper
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    • In evolutionary biology: 5,476
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Host adaptations in the fixLJ pathway of the Burkholderia cepacia complex increase virulence

microbiology more details view paper
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    • In microbiology: 7,689
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Experimental evolution to identify undescribed mechanisms of resistance to a novel cationic peptide antibiotic

microbiology more details view paper
  • Downloaded 159 times
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    • In microbiology: 7,752
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Genotypic diversity between surgical and nasal Staphylococcus aureus isolates

microbiology more details view paper
  • Downloaded 81 times
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