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Author: Vaughn S Cooper

Rankings

  • All-time downloads: 32,923 (rank: 4,599 )
  • Categories:
    • epidemiology: 5,829 (rank: 2,138 (tie) )
    • evolutionary biology: 6,877 (rank: 343 )
    • genetics: 945 (rank: 15,928 (tie) )
    • infectious diseases: 12,219 (rank: 3,739 (tie) )
    • microbiology: 7,053 (rank: 1,786 )

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Preprints

Immunosuppression broadens evolutionary pathways to treatment failure during Acinetobacter baumannii pneumonia

microbiology more details view paper

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Emergence in late 2020 of multiple lineages of SARS-CoV-2 Spike protein variants affecting amino acid position 677

infectious diseases more details view paper
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    • Site-wide: 603
    • In infectious diseases: 200
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Emergence of an early SARS-CoV-2 epidemic in the United States

epidemiology more details view paper
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    • Site-wide: 1,609
    • In epidemiology: 194
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Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle

microbiology more details view paper
  • Downloaded 1,434 times
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    • Site-wide: 12,135
    • In microbiology: 689
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SARS-CoV-2 genome evolution exposes early human adaptations

evolutionary biology more details view paper
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    • In evolutionary biology: 430
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The rate and molecular spectrum of spontaneous mutations in the GC-rich multi-chromosome genome of Burkholderia cenocepacia

evolutionary biology more details view paper
  • Downloaded 820 times
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    • Site-wide: 27,655
    • In evolutionary biology: 1,302
  • Year to date:
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Comprehensive analysis of horizontal gene transfer among multidrug-resistant bacterial pathogens in a single hospital

microbiology more details view paper
  • Downloaded 818 times
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    • Site-wide: 27,760
    • In microbiology: 1,629
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Host-selected mutations converging on a global regulator drive an adaptive leap by bacteria to symbiosis

evolutionary biology more details view paper
  • Downloaded 737 times
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    • Site-wide: 32,143
    • In evolutionary biology: 1,579
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    • Site-wide: 92,317
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The Pseudomonas aeruginosa Wsp pathway undergoes positive evolutionary selection during chronic infection

microbiology more details view paper
  • Downloaded 697 times
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    • Site-wide: 34,689
    • In microbiology: 2,065
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EvolvingSTEM: A microbial evolution-in-action curriculum that enhances learning of evolutionary biology and biotechnology

evolutionary biology more details view paper
  • Downloaded 669 times
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    • Site-wide: 36,608
    • In evolutionary biology: 1,854
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Diverse phenotypic and genetic responses to short-term selection in evolving Escherichia coli populations

evolutionary biology more details view paper
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    • Site-wide: 40,464
    • In evolutionary biology: 2,086
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Evolution and adaptation of Pseudomonas aeruginosa in the paranasal sinuses of people with cystic fibrosis

microbiology more details view paper
  • Downloaded 607 times
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    • Site-wide: 41,457
    • In microbiology: 2,533
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Bacterial community profiles and Vibrio parahaemolyticus abundance in individual oysters and their association with estuarine ecology

microbiology more details view paper
  • Downloaded 604 times
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    • Site-wide: 41,740
    • In microbiology: 2,553
  • Year to date:
    • Site-wide: 92,606
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Periodic variation of mutation rates in bacterial genomes associated with replication timing

genetics more details view paper
  • Downloaded 547 times
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    • Site-wide: 47,247
    • In genetics: 2,216
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Parallel evolution of two clades of a major Atlantic endemic Vibrio parahaemolyticus pathogen lineage by independent acquisition of related pathogenicity islands

evolutionary biology more details view paper
  • Downloaded 547 times
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    • Site-wide: 47,220
    • In evolutionary biology: 2,513
  • Year to date:
    • Site-wide: 112,609
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    • Site-wide: 115,704

Experimental Evolution in vivo to Identify Selective Pressures During Pneumococcal Colonization

microbiology more details view paper
  • Downloaded 454 times
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    • Site-wide: 58,347
    • In microbiology: 3,819
  • Year to date:
    • Site-wide: 130,432
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The roles of history, chance, and natural selection in the evolution of antibiotic resistance

evolutionary biology more details view paper
  • Downloaded 434 times
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    • Site-wide: 61,050
    • In evolutionary biology: 3,347
  • Year to date:
    • Site-wide: 38,614
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    • Site-wide: 32,365

Experimental evolution to identify undescribed mechanisms of resistance to a novel cationic peptide antibiotic

microbiology more details view paper
  • Downloaded 413 times
  • Download rankings, all-time:
    • Site-wide: 64,406
    • In microbiology: 4,282
  • Year to date:
    • Site-wide: 6,494
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    • Site-wide: 5,960

Genome-wide biases in the rate and molecular spectrum of spontaneous mutations in Vibrio cholerae and Vibrio fischeri

genetics more details view paper
  • Downloaded 398 times
  • Download rankings, all-time:
    • Site-wide: 66,724
    • In genetics: 3,080
  • Year to date:
    • Site-wide: 121,532
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Mutations that improve the efficiency of a weak-link enzyme are rare compared to adaptive mutations elsewhere in the genome

evolutionary biology more details view paper
  • Downloaded 384 times
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    • Site-wide: 68,887
    • In evolutionary biology: 3,793
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    • Site-wide: 90,519
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The fitness effects of spontaneous mutations nearly unseen by selection in a bacterium with multiple chromosomes

evolutionary biology more details view paper
  • Downloaded 381 times
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    • Site-wide: 69,425
    • In evolutionary biology: 3,819
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    • Site-wide: 106,351
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Negative frequency-dependent selection maintains coexisting genotypes during fluctuating selection

evolutionary biology more details view paper
  • Downloaded 377 times
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    • Site-wide: 70,186
    • In evolutionary biology: 3,864
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    • Site-wide: 124,781
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    • Site-wide: 129,631

Parallel evolution of tobramycin resistance across species and environments

microbiology more details view paper
  • Downloaded 367 times
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    • Site-wide: 71,874
    • In microbiology: 4,907
  • Year to date:
    • Site-wide: 105,136
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Altered Nucleoprotein Binding to Influenza Virus RNA Impacts Packaging Efficiency and Replication

microbiology more details view paper
  • Downloaded 366 times
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    • Site-wide: 72,027
    • In microbiology: 4,918
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    • Site-wide: 133,112
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    • Site-wide: 127,641

Genomic and chemical diversity of Bacillus subtilis secondary metabolites against plant pathogenic fungi

microbiology more details view paper
  • Downloaded 323 times
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    • Site-wide: 79,994
    • In microbiology: 5,585
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    • Site-wide: 27,933
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    • Site-wide: 57,107

One gene, multiple ecological strategies: a biofilm regulator is a capacitor for sustainable diversity

microbiology more details view paper
  • Downloaded 267 times
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    • Site-wide: 91,862
    • In microbiology: 6,586
  • Year to date:
    • Site-wide: 118,188
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Polygenic adaptation, clonal interference, and the evolution of mutators in experimental Pseudomonas aeruginosa populations

evolutionary biology more details view paper
  • Downloaded 262 times
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    • Site-wide: 92,809
    • In evolutionary biology: 4,973
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Quantitative mapping of mRNA 3′ ends in Pseudomonas aeruginosa reveals putative riboregulators and a pervasive role for transcription termination in response to azithromycin

microbiology more details view paper
  • Downloaded 256 times
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    • Site-wide: 94,229
    • In microbiology: 6,803
  • Year to date:
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    • Site-wide: 56,897

Quorum sensing provides a molecular mechanism for evolution to tune and maintain investment in cooperation

evolutionary biology more details view paper
  • Downloaded 220 times
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    • Site-wide: 102,011
    • In evolutionary biology: 5,402
  • Year to date:
    • Site-wide: 58,155
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Host adaptations in the fixLJ pathway of the Burkholderia cepacia complex increase virulence

microbiology more details view paper
  • Downloaded 186 times
  • Download rankings, all-time:
    • Site-wide: 109,681
    • In microbiology: 8,159
  • Year to date:
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Rampant prophage movement among transient competitors drives rapid adaptation during infection

microbiology more details view paper
  • Downloaded 163 times
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    • Site-wide: 114,412
    • In microbiology: 8,608
  • Year to date:
    • Site-wide: 13,271
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Genotypic diversity between surgical and nasal Staphylococcus aureus isolates

microbiology more details view paper
  • Downloaded 98 times
  • Download rankings, all-time:
    • Site-wide: 126,916
    • In microbiology: 9,768
  • Year to date:
    • Site-wide: 129,927
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