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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,361 bioRxiv papers from 307,253 authors.

Author: Alicia Oshlack

Rankings

  • All-time downloads: 27,863 (rank: 802 out of 307,048)
  • Categories:
    • bioinformatics: 25,624 (rank: 69 out of 26,752)
    • developmental biology: 2,239 (rank: 429 (tie) out of 11,761)

Downloads per author, site-wide

Preprints

SuperTranscript: a data driven reference for analysis and visualisation of transcriptomes

bioinformatics more details view paper
  • Downloaded 3,118 times
  • Download rankings, all-time:
    • Site-wide: 1,161 out of 70,308
    • In bioinformatics: 228 out of 6,889
  • Year to date:
    • Site-wide: 32,560 out of 70,308
  • Since beginning of last month:
    • Site-wide: 32,873 out of 70,308

A cross-package Bioconductor workflow for analysing methylation array data

bioinformatics more details view paper
  • Downloaded 3,079 times
  • Download rankings, all-time:
    • Site-wide: 1,192 out of 70,308
    • In bioinformatics: 235 out of 6,889
  • Year to date:
    • Site-wide: 7,320 out of 70,308
  • Since beginning of last month:
    • Site-wide: 8,511 out of 70,308

Splatter: Simulation Of Single-Cell RNA Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,371 times
  • Download rankings, all-time:
    • Site-wide: 1,899 out of 70,308
    • In bioinformatics: 386 out of 6,889
  • Year to date:
    • Site-wide: 26,255 out of 70,308
  • Since beginning of last month:
    • Site-wide: 32,482 out of 70,308

STRetch: detecting and discovering pathogenic short tandem repeats expansions

bioinformatics more details view paper
  • Downloaded 2,320 times
  • Download rankings, all-time:
    • Site-wide: 1,977 out of 70,308
    • In bioinformatics: 403 out of 6,889
  • Year to date:
    • Site-wide: 68,005 out of 70,308
  • Since beginning of last month:
    • Site-wide: 36,056 out of 70,308

High throughput single cell RNA-seq of developing mouse kidney and human kidney organoids reveals a roadmap for recreating the kidney

developmental biology more details view paper
  • Downloaded 2,239 times
  • Download rankings, all-time:
    • Site-wide: 2,104 out of 70,308
    • In developmental biology: 28 out of 2,103
  • Year to date:
    • Site-wide: 21,193 out of 70,308
  • Since beginning of last month:
    • Site-wide: 9,304 out of 70,308

Clustering trees: a visualisation for evaluating clusterings at multiple resolutions

bioinformatics more details view paper
  • Downloaded 2,207 times
  • Download rankings, all-time:
    • Site-wide: 2,155 out of 70,308
    • In bioinformatics: 439 out of 6,889
  • Year to date:
    • Site-wide: 26,412 out of 70,308
  • Since beginning of last month:
    • Site-wide: 18,394 out of 70,308

Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database

bioinformatics more details view paper
  • Downloaded 1,591 times
  • Download rankings, all-time:
    • Site-wide: 3,775 out of 70,308
    • In bioinformatics: 755 out of 6,889
  • Year to date:
    • Site-wide: 34,264 out of 70,308
  • Since beginning of last month:
    • Site-wide: 45,294 out of 70,308

Ximmer: A System for Improving Accuracy and Consistency of CNV Calling from Exome Data

bioinformatics more details view paper
  • Downloaded 1,576 times
  • Download rankings, all-time:
    • Site-wide: 3,839 out of 70,308
    • In bioinformatics: 769 out of 6,889
  • Year to date:
    • Site-wide: 2,194 out of 70,308
  • Since beginning of last month:
    • Site-wide: 40,431 out of 70,308

SuperFreq: Integrated mutation detection and clonal tracking in cancer

bioinformatics more details view paper
  • Downloaded 1,352 times
  • Download rankings, all-time:
    • Site-wide: 4,977 out of 70,308
    • In bioinformatics: 954 out of 6,889
  • Year to date:
    • Site-wide: 4,381 out of 70,308
  • Since beginning of last month:
    • Site-wide: 4,633 out of 70,308

JAFFA: High sensitivity transcriptome-focused fusion gene detection.

bioinformatics more details view paper
  • Downloaded 1,104 times
  • Download rankings, all-time:
    • Site-wide: 6,995 out of 70,308
    • In bioinformatics: 1,272 out of 6,889
  • Year to date:
    • Site-wide: 41,930 out of 70,308
  • Since beginning of last month:
    • Site-wide: 51,360 out of 70,308

Bazam: A rapid method for read extraction and realignment of high throughput sequencing data

bioinformatics more details view paper
  • Downloaded 880 times
  • Download rankings, all-time:
    • Site-wide: 10,074 out of 70,308
    • In bioinformatics: 1,725 out of 6,889
  • Year to date:
    • Site-wide: 5,814 out of 70,308
  • Since beginning of last month:
    • Site-wide: 18,761 out of 70,308

Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis

bioinformatics more details view paper
  • Downloaded 806 times
  • Download rankings, all-time:
    • Site-wide: 11,559 out of 70,308
    • In bioinformatics: 1,937 out of 6,889
  • Year to date:
    • Site-wide: 26,894 out of 70,308
  • Since beginning of last month:
    • Site-wide: 13,933 out of 70,308

Fast and accurate differential transcript usage by testing equivalence class counts

bioinformatics more details view paper
  • Downloaded 699 times
  • Download rankings, all-time:
    • Site-wide: 14,229 out of 70,308
    • In bioinformatics: 2,280 out of 6,889
  • Year to date:
    • Site-wide: 25,864 out of 70,308
  • Since beginning of last month:
    • Site-wide: 21,808 out of 70,308

A comparison of control samples for ChIP-seq of histone modifications

bioinformatics more details view paper
  • Downloaded 669 times
  • Download rankings, all-time:
    • Site-wide: 15,129 out of 70,308
    • In bioinformatics: 2,381 out of 6,889
  • Year to date:
    • Site-wide: 47,044 out of 70,308
  • Since beginning of last month:
    • Site-wide: 55,499 out of 70,308

Clinker: visualising fusion genes detected in RNA-seq data

bioinformatics more details view paper
  • Downloaded 660 times
  • Download rankings, all-time:
    • Site-wide: 15,434 out of 70,308
    • In bioinformatics: 2,408 out of 6,889
  • Year to date:
    • Site-wide: 33,436 out of 70,308
  • Since beginning of last month:
    • Site-wide: 49,909 out of 70,308

Cpipe: a shared variant detection pipeline designed for diagnostic settings

bioinformatics more details view paper
  • Downloaded 556 times
  • Download rankings, all-time:
    • Site-wide: 19,618 out of 70,308
    • In bioinformatics: 2,908 out of 6,889
  • Year to date:
    • Site-wide: 42,949 out of 70,308
  • Since beginning of last month:
    • Site-wide: 25,822 out of 70,308

Transcriptional evaluation of the developmental accuracy, reproducibility and robustness of kidney organoids derived from human pluripotent stem cells

bioinformatics more details view paper
  • Downloaded 513 times
  • Download rankings, all-time:
    • Site-wide: 21,729 out of 70,308
    • In bioinformatics: 3,123 out of 6,889
  • Year to date:
    • Site-wide: 51,653 out of 70,308
  • Since beginning of last month:
    • Site-wide: 56,724 out of 70,308

Sierra: Discovery of differential transcript usage from polyA-captured single-cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 508 times
  • Download rankings, all-time:
    • Site-wide: 22,040 out of 70,308
    • In bioinformatics: 3,142 out of 6,889
  • Year to date:
    • Site-wide: 11,582 out of 70,308
  • Since beginning of last month:
    • Site-wide: 131 out of 70,308

Removing unwanted variation in a differential methylation analysis of Illumina HumanMethylation450 array data

bioinformatics more details view paper
  • Downloaded 483 times
  • Download rankings, all-time:
    • Site-wide: 23,499 out of 70,308
    • In bioinformatics: 3,307 out of 6,889
  • Year to date:
    • Site-wide: 41,903 out of 70,308
  • Since beginning of last month:
    • Site-wide: 42,240 out of 70,308

Gene Length And Detection Bias In Single Cell RNA Sequencing Protocols

bioinformatics more details view paper
  • Downloaded 417 times
  • Download rankings, all-time:
    • Site-wide: 27,843 out of 70,308
    • In bioinformatics: 3,710 out of 6,889
  • Year to date:
    • Site-wide: 52,274 out of 70,308
  • Since beginning of last month:
    • Site-wide: 53,807 out of 70,308

DiffVar: A new method for detecting differential variability with application to methylation in cancer and aging

bioinformatics more details view paper
  • Downloaded 377 times
  • Download rankings, all-time:
    • Site-wide: 31,078 out of 70,308
    • In bioinformatics: 4,022 out of 6,889
  • Year to date:
    • Site-wide: 53,322 out of 70,308
  • Since beginning of last month:
    • Site-wide: 57,894 out of 70,308

Pooled-parent exome sequencing to prioritise de novo variants in genetic disease

bioinformatics more details view paper
  • Downloaded 338 times
  • Download rankings, all-time:
    • Site-wide: 34,728 out of 70,308
    • In bioinformatics: 4,317 out of 6,889
  • Year to date:
    • Site-wide: 65,001 out of 70,308
  • Since beginning of last month:
    • Site-wide: 31,458 out of 70,308

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