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Author: Katherine S. Pollard

Rankings

  • All-time downloads: 79,839 (rank: 1,449 out of 509,474)
  • Categories:
    • bioinformatics: 11,028 (rank: 550 out of 36,841)
    • clinical trials: 1,468 (rank: 188 (tie) out of 1,036)
    • developmental biology: 5,700 (rank: 141 out of 17,358)
    • ecology: 1,849 (rank: 1,400 out of 19,196)
    • evolutionary biology: 7,976 (rank: 241 out of 22,162)
    • genomics: 22,231 (rank: 406 out of 45,500)
    • immunology: 558 (rank: 11,527 (tie) out of 27,696)
    • infectious diseases: 9,436 (rank: 3,529 (tie) out of 32,342)
    • microbiology: 10,658 (rank: 982 out of 52,210)
    • molecular biology: 4,984 (rank: 474 out of 24,105)
    • neuroscience: 1,339 (rank: 14,304 (tie) out of 73,577)
    • systems biology: 2,612 (rank: 1,230 (tie) out of 12,769)

Downloads per author, site-wide

Preprints

Direct detection of SARS-CoV-2 using CRISPR-Cas13a and a mobile phone

infectious diseases more details view paper
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    • Site-wide: 501 out of 118,083
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    • Site-wide: 44 out of 118,083

Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates

genomics more details view paper
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    • In genomics: 78 out of 6,431
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Single cell epigenomic atlas of the developing human brain and organoids

developmental biology more details view paper
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    • In developmental biology: 9 out of 3,115
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Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

evolutionary biology more details view paper
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    • In evolutionary biology: 46 out of 6,181
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American Gut: an Open Platform for Citizen-Science Microbiome Research

microbiology more details view paper
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    • In microbiology: 176 out of 9,336
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A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

microbiology more details view paper
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    • In microbiology: 177 out of 9,336
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Predicting 3D genome folding from DNA sequence

genomics more details view paper
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An integrated metagenomics pipeline for strain profiling reveals novel patterns of transmission and global biogeography of bacteria

genomics more details view paper
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    • In genomics: 428 out of 6,431
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    • Site-wide: 23,580 out of 118,083

Massively parallel dissection of human accelerated regions in human and chimpanzee neural progenitors

evolutionary biology more details view paper
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    • Site-wide: 3,894 out of 118,083
    • In evolutionary biology: 93 out of 6,181
  • Year to date:
    • Site-wide: 14,169 out of 118,083
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    • Site-wide: 21,129 out of 118,083

Transcription Factors Recognize DNA Shape Without Nucleotide Recognition

systems biology more details view paper
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    • In systems biology: 70 out of 2,633
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    • Site-wide: 81,670 out of 118,083
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    • Site-wide: 99,259 out of 118,083

Chromatin features constrain structural variation across evolutionary timescales

genomics more details view paper
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    • In genomics: 514 out of 6,431
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Principles of Meiotic Chromosome Assembly

molecular biology more details view paper
  • Downloaded 1,876 times
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    • In molecular biology: 163 out of 3,615
  • Year to date:
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Molecular basis of CTCF binding polarity in genome folding

molecular biology more details view paper
  • Downloaded 1,737 times
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    • Site-wide: 7,403 out of 118,083
    • In molecular biology: 190 out of 3,615
  • Year to date:
    • Site-wide: 6,228 out of 118,083
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    • Site-wide: 11,042 out of 118,083

A high-resolution, chromosome-assigned Komodo dragon genome reveals adaptations in the cardiovascular, muscular, and chemosensory systems of monitor lizards

genomics more details view paper
  • Downloaded 1,678 times
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    • In genomics: 924 out of 6,431
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    • Site-wide: 32,804 out of 118,083
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    • Site-wide: 23,568 out of 118,083

Average genome size estimation enables accurate quantification of gene family abundance and sheds light on the functional ecology of the human microbiome

bioinformatics more details view paper
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    • In bioinformatics: 1,020 out of 9,568
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    • Site-wide: 82,133 out of 118,083
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    • Site-wide: 51,477 out of 118,083

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization

bioinformatics more details view paper
  • Downloaded 1,499 times
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    • In bioinformatics: 1,203 out of 9,568
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Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial

clinical trials more details view paper
  • Downloaded 1,468 times
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    • In clinical trials: 16 out of 99
  • Year to date:
    • Site-wide: 47,344 out of 118,083
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    • Site-wide: 39,552 out of 118,083

Most regulatory interactions are not in linkage disequilibrium

genomics more details view paper
  • Downloaded 1,349 times
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    • Site-wide: 10,901 out of 118,083
    • In genomics: 1,263 out of 6,431
  • Year to date:
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    • Site-wide: 63,640 out of 118,083

Proteobacteria drive significant functional variability in the human gut microbiome

bioinformatics more details view paper
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    • Site-wide: 10,912 out of 118,083
    • In bioinformatics: 1,412 out of 9,568
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Protein binding and methylation on looping chromatin accurately predict distal regulatory interactions

bioinformatics more details view paper
  • Downloaded 1,248 times
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    • In bioinformatics: 1,570 out of 9,568
  • Year to date:
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  • Since beginning of last month:
    • Site-wide: 104,636 out of 118,083

Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice

microbiology more details view paper
  • Downloaded 1,216 times
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    • In microbiology: 693 out of 9,336
  • Year to date:
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    • Site-wide: 65,745 out of 118,083

Genomic analyses for age at menarche identify 389 independent signals and indicate BMI-independent effects of puberty timing on cancer susceptibility

genomics more details view paper
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    • In genomics: 1,445 out of 6,431
  • Year to date:
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    • Site-wide: 63,398 out of 118,083

Climate change will lead to pronounced shifts in the diversity of soil microbial communities

ecology more details view paper
  • Downloaded 976 times
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    • In ecology: 328 out of 4,583
  • Year to date:
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A Chromatin Accessibility Atlas of the Developing Human Telencephalon

neuroscience more details view paper
  • Downloaded 887 times
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    • In neuroscience: 2,695 out of 18,574
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CellWalker integrates single-cell and bulk data to resolve regulatory elements across cell types in complex tissues

bioinformatics more details view paper
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    • In bioinformatics: 2,604 out of 9,568
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Longitudinal linked read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment

microbiology more details view paper
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    • In microbiology: 1,174 out of 9,336
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Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

evolutionary biology more details view paper
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    • In evolutionary biology: 1,097 out of 6,181
  • Year to date:
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    • Site-wide: 87,488 out of 118,083

Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming

molecular biology more details view paper
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    • Site-wide: 23,486 out of 118,083
    • In molecular biology: 660 out of 3,615
  • Year to date:
    • Site-wide: 23,367 out of 118,083
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    • Site-wide: 27,513 out of 118,083

Automated and accurate estimation of gene family abundance from shotgun metagenomes

bioinformatics more details view paper
  • Downloaded 790 times
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    • Site-wide: 23,926 out of 118,083
    • In bioinformatics: 2,942 out of 9,568
  • Year to date:
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    • Site-wide: 87,885 out of 118,083

A most wanted list of conserved protein families with no known domains

genomics more details view paper
  • Downloaded 767 times
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    • In genomics: 2,429 out of 6,431
  • Year to date:
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  • Since beginning of last month:
    • Site-wide: 111,951 out of 118,083

Features of ChIP-seq data peak calling algorithms with good operating characteristics

bioinformatics more details view paper
  • Downloaded 765 times
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    • In bioinformatics: 3,039 out of 9,568
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    • Site-wide: 112,889 out of 118,083

AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design

bioinformatics more details view paper
  • Downloaded 709 times
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    • Site-wide: 27,805 out of 118,083
    • In bioinformatics: 3,286 out of 9,568
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    • Site-wide: 73,505 out of 118,083
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    • Site-wide: 90,987 out of 118,083

Ultra-rapid metagenotyping of the human gut microbiome

bioinformatics more details view paper
  • Downloaded 651 times
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    • In bioinformatics: 3,624 out of 9,568
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A Transcriptional Switch Governing Fibroblast Plasticity Underlies Reversibility of Chronic Heart Disease

molecular biology more details view paper
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    • Site-wide: 10,973 out of 118,083

A diet-dependent enzyme from the human gut microbiome promotes Th17 cell accumulation and colitis

immunology more details view paper
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    • In immunology: 956 out of 3,296
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Drug resistant gut bacteria mimic a host mechanism for anticancer drug clearance

microbiology more details view paper
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    • Site-wide: 23,765 out of 118,083

Accurate and sensitive detection of microbial eukaryotes from metagenomic shotgun sequencing

bioinformatics more details view paper
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    • In bioinformatics: 4,298 out of 9,568
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A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota

microbiology more details view paper
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    • In microbiology: 2,435 out of 9,336
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    • Site-wide: 39,677 out of 118,083

phylogenize: correcting for phylogeny reveals genes associated with microbial distributions

bioinformatics more details view paper
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    • In bioinformatics: 4,427 out of 9,568
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An atlas of lamina-associated chromatin across thirteen human cell types reveals cell-type-specific and multiple subtypes of peripheral heterochromatin

developmental biology more details view paper
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    • In developmental biology: 1,095 out of 3,115
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    • Site-wide: 14,113 out of 118,083

The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation

microbiology more details view paper
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    • In microbiology: 2,842 out of 9,336
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    • Site-wide: 60,429 out of 118,083

Global ecotypes in the ubiquitous marine clade SAR86

ecology more details view paper
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    • Site-wide: 70,786 out of 118,083

Evolution of mechanisms that control mating in Drosophila males

neuroscience more details view paper
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    • Site-wide: 111,917 out of 118,083

Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

evolutionary biology more details view paper
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    • In evolutionary biology: 2,860 out of 6,181
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    • Site-wide: 95,608 out of 118,083

Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults

genomics more details view paper
  • Downloaded 410 times
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    • Site-wide: 87,891 out of 118,083

The geometry of the distance-decay of similarity in ecological communities

ecology more details view paper
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A computational framework for detecting signatures of accelerated somatic evolution in cancer genomes

bioinformatics more details view paper
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    • Site-wide: 107,412 out of 118,083

Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages

evolutionary biology more details view paper
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    • Site-wide: 62,257 out of 118,083
    • In evolutionary biology: 3,617 out of 6,181
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