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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 64,934 bioRxiv papers from 287,775 authors.

Author: Katherine S Pollard

Rankings

  • All-time downloads: 39,976 (rank: 381 out of 287,775)
  • Categories:
    • bioinformatics: 7,995 (rank: 434 out of 25,012)
    • clinical trials: 1,249 (rank: 129 (tie) out of 1,031)
    • ecology: 1,449 (rank: 850 out of 11,423)
    • evolutionary biology: 6,842 (rank: 95 out of 15,705)
    • genomics: 11,137 (rank: 888 out of 32,704)
    • microbiology: 6,246 (rank: 103 out of 29,473)
    • molecular biology: 2,046 (rank: 629 out of 13,541)
    • neuroscience: 533 (rank: 18,905 (tie) out of 47,759)
    • systems biology: 2,479 (rank: 542 (tie) out of 8,742)

Downloads per author, site-wide

Preprints

Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

evolutionary biology more details view paper
  • Downloaded 3,363 times
  • Download rankings, all-time:
    • Site-wide: 910 out of 64,934
    • In evolutionary biology: 28 out of 4,343
  • Year to date:
    • Site-wide: 3,525 out of 64,934
  • Since beginning of last month:
    • Site-wide: 17,389 out of 64,934

American Gut: an Open Platform for Citizen-Science Microbiome Research

microbiology more details view paper
  • Downloaded 3,005 times
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    • Site-wide: 1,119 out of 64,934
    • In microbiology: 23 out of 5,210
  • Year to date:
    • Site-wide: 6,052 out of 64,934
  • Since beginning of last month:
    • Site-wide: 7,100 out of 64,934

An integrated metagenomics pipeline for strain profiling reveals novel patterns of transmission and global biogeography of bacteria

genomics more details view paper
  • Downloaded 2,596 times
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    • Site-wide: 1,453 out of 64,934
    • In genomics: 331 out of 4,441
  • Year to date:
    • Site-wide: 25,601 out of 64,934
  • Since beginning of last month:
    • Site-wide: 23,861 out of 64,934

Transcription Factors Recognize DNA Shape Without Nucleotide Recognition

systems biology more details view paper
  • Downloaded 2,479 times
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    • Site-wide: 1,581 out of 64,934
    • In systems biology: 34 out of 1,831
  • Year to date:
    • Site-wide: 25,592 out of 64,934
  • Since beginning of last month:
    • Site-wide: None out of 64,934

Chromatin features constrain structural variation across evolutionary timescales

genomics more details view paper
  • Downloaded 2,469 times
  • Download rankings, all-time:
    • Site-wide: 1,592 out of 64,934
    • In genomics: 354 out of 4,441
  • Year to date:
    • Site-wide: 8,207 out of 64,934
  • Since beginning of last month:
    • Site-wide: 39,643 out of 64,934

Massively parallel dissection of human accelerated regions in human and chimpanzee neural progenitors

evolutionary biology more details view paper
  • Downloaded 2,103 times
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    • Site-wide: 2,144 out of 64,934
    • In evolutionary biology: 91 out of 4,343
  • Year to date:
    • Site-wide: 3,339 out of 64,934
  • Since beginning of last month:
    • Site-wide: 4,243 out of 64,934

Principles of Meiotic Chromosome Assembly

molecular biology more details view paper
  • Downloaded 1,641 times
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    • Site-wide: 3,247 out of 64,934
    • In molecular biology: 96 out of 2,052
  • Year to date:
    • Site-wide: 2,139 out of 64,934
  • Since beginning of last month:
    • Site-wide: 6,351 out of 64,934

Average genome size estimation enables accurate quantification of gene family abundance and sheds light on the functional ecology of the human microbiome

bioinformatics more details view paper
  • Downloaded 1,568 times
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    • Site-wide: 3,502 out of 64,934
    • In bioinformatics: 704 out of 6,429
  • Year to date:
    • Site-wide: 56,959 out of 64,934
  • Since beginning of last month:
    • Site-wide: 57,259 out of 64,934

Predicting 3D genome folding from DNA sequence

genomics more details view paper
  • Downloaded 1,457 times
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    • Site-wide: 3,982 out of 64,934
    • In genomics: 732 out of 4,441
  • Year to date:
    • Site-wide: 845 out of 64,934
  • Since beginning of last month:
    • Site-wide: 29 out of 64,934

A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

microbiology more details view paper
  • Downloaded 1,395 times
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    • Site-wide: 4,284 out of 64,934
    • In microbiology: 135 out of 5,210
  • Year to date:
    • Site-wide: 919 out of 64,934
  • Since beginning of last month:
    • Site-wide: 154 out of 64,934

A high-resolution, chromosome-assigned Komodo dragon genome reveals adaptations in the cardiovascular, muscular, and chemosensory systems of monitor lizards

genomics more details view paper
  • Downloaded 1,363 times
  • Download rankings, all-time:
    • Site-wide: 4,450 out of 64,934
    • In genomics: 798 out of 4,441
  • Year to date:
    • Site-wide: 962 out of 64,934
  • Since beginning of last month:
    • Site-wide: 13,307 out of 64,934

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization

bioinformatics more details view paper
  • Downloaded 1,346 times
  • Download rankings, all-time:
    • Site-wide: 4,542 out of 64,934
    • In bioinformatics: 889 out of 6,429
  • Year to date:
    • Site-wide: 17,790 out of 64,934
  • Since beginning of last month:
    • Site-wide: 19,208 out of 64,934

Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial

clinical trials more details view paper
  • Downloaded 1,249 times
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    • Site-wide: 5,105 out of 64,934
    • In clinical trials: 12 out of 99
  • Year to date:
    • Site-wide: 14,976 out of 64,934
  • Since beginning of last month:
    • Site-wide: 16,445 out of 64,934

Proteobacteria drive significant functional variability in the human gut microbiome

bioinformatics more details view paper
  • Downloaded 1,246 times
  • Download rankings, all-time:
    • Site-wide: 5,126 out of 64,934
    • In bioinformatics: 996 out of 6,429
  • Year to date:
    • Site-wide: 48,109 out of 64,934
  • Since beginning of last month:
    • Site-wide: 34,233 out of 64,934

Protein binding and methylation on looping chromatin accurately predict distal regulatory interactions

bioinformatics more details view paper
  • Downloaded 1,186 times
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    • Site-wide: 5,581 out of 64,934
    • In bioinformatics: 1,069 out of 6,429
  • Year to date:
    • Site-wide: 62,417 out of 64,934
  • Since beginning of last month:
    • Site-wide: 60,303 out of 64,934

Most regulatory interactions are not in linkage disequilibrium

genomics more details view paper
  • Downloaded 1,151 times
  • Download rankings, all-time:
    • Site-wide: 5,881 out of 64,934
    • In genomics: 986 out of 4,441
  • Year to date:
    • Site-wide: 13,444 out of 64,934
  • Since beginning of last month:
    • Site-wide: None out of 64,934

Genomic analyses for age at menarche identify 389 independent signals and indicate BMI-independent effects of puberty timing on cancer susceptibility

genomics more details view paper
  • Downloaded 1,107 times
  • Download rankings, all-time:
    • Site-wide: 6,284 out of 64,934
    • In genomics: 1,037 out of 4,441
  • Year to date:
    • Site-wide: 41,506 out of 64,934
  • Since beginning of last month:
    • Site-wide: 39,181 out of 64,934

Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice

microbiology more details view paper
  • Downloaded 1,068 times
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    • Site-wide: 6,680 out of 64,934
    • In microbiology: 262 out of 5,210
  • Year to date:
    • Site-wide: 43,867 out of 64,934
  • Since beginning of last month:
    • Site-wide: 37,610 out of 64,934

Climate change will lead to pronounced shifts in the diversity of soil microbial communities

ecology more details view paper
  • Downloaded 828 times
  • Download rankings, all-time:
    • Site-wide: 9,935 out of 64,934
    • In ecology: 241 out of 2,774
  • Year to date:
    • Site-wide: 21,103 out of 64,934
  • Since beginning of last month:
    • Site-wide: 21,455 out of 64,934

Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

evolutionary biology more details view paper
  • Downloaded 726 times
  • Download rankings, all-time:
    • Site-wide: 12,073 out of 64,934
    • In evolutionary biology: 837 out of 4,343
  • Year to date:
    • Site-wide: 55,950 out of 64,934
  • Since beginning of last month:
    • Site-wide: 52,548 out of 64,934

Automated and accurate estimation of gene family abundance from shotgun metagenomes

bioinformatics more details view paper
  • Downloaded 713 times
  • Download rankings, all-time:
    • Site-wide: 12,408 out of 64,934
    • In bioinformatics: 2,053 out of 6,429
  • Year to date:
    • Site-wide: 58,815 out of 64,934
  • Since beginning of last month:
    • Site-wide: 58,265 out of 64,934

Features of ChIP-seq data peak calling algorithms with good operating characteristics

bioinformatics more details view paper
  • Downloaded 697 times
  • Download rankings, all-time:
    • Site-wide: 12,845 out of 64,934
    • In bioinformatics: 2,114 out of 6,429
  • Year to date:
    • Site-wide: 62,729 out of 64,934
  • Since beginning of last month:
    • Site-wide: 59,795 out of 64,934

A most wanted list of conserved protein families with no known domains

genomics more details view paper
  • Downloaded 696 times
  • Download rankings, all-time:
    • Site-wide: 12,891 out of 64,934
    • In genomics: 1,775 out of 4,441
  • Year to date:
    • Site-wide: 59,348 out of 64,934
  • Since beginning of last month:
    • Site-wide: 60,379 out of 64,934

AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design

bioinformatics more details view paper
  • Downloaded 565 times
  • Download rankings, all-time:
    • Site-wide: 17,188 out of 64,934
    • In bioinformatics: 2,627 out of 6,429
  • Year to date:
    • Site-wide: 24,086 out of 64,934
  • Since beginning of last month:
    • Site-wide: 17,234 out of 64,934

Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming

molecular biology more details view paper
  • Downloaded 405 times
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    • Site-wide: 25,678 out of 64,934
    • In molecular biology: 734 out of 2,052
  • Year to date:
    • Site-wide: 7,969 out of 64,934
  • Since beginning of last month:
    • Site-wide: 11,890 out of 64,934

Evolution of mechanisms that control mating in Drosophila males

neuroscience more details view paper
  • Downloaded 383 times
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    • Site-wide: 27,175 out of 64,934
    • In neuroscience: 4,662 out of 11,627
  • Year to date:
    • Site-wide: 51,310 out of 64,934
  • Since beginning of last month:
    • Site-wide: 59,872 out of 64,934

Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

evolutionary biology more details view paper
  • Downloaded 374 times
  • Download rankings, all-time:
    • Site-wide: 27,918 out of 64,934
    • In evolutionary biology: 2,101 out of 4,343
  • Year to date:
    • Site-wide: 57,827 out of 64,934
  • Since beginning of last month:
    • Site-wide: 49,493 out of 64,934

phylogenize: correcting for phylogeny reveals genes associated with microbial distributions

bioinformatics more details view paper
  • Downloaded 358 times
  • Download rankings, all-time:
    • Site-wide: 29,247 out of 64,934
    • In bioinformatics: 3,858 out of 6,429
  • Year to date:
    • Site-wide: 20,711 out of 64,934
  • Since beginning of last month:
    • Site-wide: 23,446 out of 64,934

The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation

microbiology more details view paper
  • Downloaded 341 times
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    • Site-wide: 30,702 out of 64,934
    • In microbiology: 1,869 out of 5,210
  • Year to date:
    • Site-wide: 40,772 out of 64,934
  • Since beginning of last month:
    • Site-wide: 49,459 out of 64,934

A computational framework for detecting signatures of accelerated somatic evolution in cancer genomes

bioinformatics more details view paper
  • Downloaded 316 times
  • Download rankings, all-time:
    • Site-wide: 32,992 out of 64,934
    • In bioinformatics: 4,169 out of 6,429
  • Year to date:
    • Site-wide: 58,495 out of 64,934
  • Since beginning of last month:
    • Site-wide: 35,084 out of 64,934

Global ecotypes in the ubiquitous marine clade SAR86

ecology more details view paper
  • Downloaded 312 times
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    • Site-wide: 33,363 out of 64,934
    • In ecology: 1,086 out of 2,774
  • Year to date:
    • Site-wide: 12,188 out of 64,934
  • Since beginning of last month:
    • Site-wide: 19,969 out of 64,934

The geometry of the distance-decay of similarity in ecological communities

ecology more details view paper
  • Downloaded 309 times
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    • Site-wide: 33,623 out of 64,934
    • In ecology: 1,096 out of 2,774
  • Year to date:
    • Site-wide: 54,403 out of 64,934
  • Since beginning of last month:
    • Site-wide: 51,884 out of 64,934

Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults

genomics more details view paper
  • Downloaded 298 times
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    • Site-wide: 34,696 out of 64,934
    • In genomics: 3,224 out of 4,441
  • Year to date:
    • Site-wide: 44,261 out of 64,934
  • Since beginning of last month:
    • Site-wide: 52,780 out of 64,934

A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota

microbiology more details view paper
  • Downloaded 296 times
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    • Site-wide: 34,858 out of 64,934
    • In microbiology: 2,206 out of 5,210
  • Year to date:
    • Site-wide: 23,748 out of 64,934
  • Since beginning of last month:
    • Site-wide: 28,239 out of 64,934

Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages

evolutionary biology more details view paper
  • Downloaded 276 times
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    • Site-wide: 36,959 out of 64,934
    • In evolutionary biology: 2,764 out of 4,343
  • Year to date:
    • Site-wide: 55,828 out of 64,934
  • Since beginning of last month:
    • Site-wide: 51,567 out of 64,934

A Chromatin Accessibility Atlas of the Developing Human Telencephalon

neuroscience more details view paper
  • Downloaded 150 times
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    • Site-wide: 52,965 out of 64,934
    • In neuroscience: 9,415 out of 11,627
  • Year to date:
    • Site-wide: 31,246 out of 64,934
  • Since beginning of last month:
    • Site-wide: 1,773 out of 64,934

Drug resistant gut bacteria mimic a host mechanism for anticancer drug clearance

microbiology more details view paper
  • Downloaded 141 times
  • Download rankings, all-time:
    • Site-wide: 54,309 out of 64,934
    • In microbiology: 4,012 out of 5,210
  • Year to date:
    • Site-wide: 33,304 out of 64,934
  • Since beginning of last month:
    • Site-wide: 1,937 out of 64,934

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