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Author: Katherine S. Pollard

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    • clinical trials: 1,367 (rank: 165 (tie) out of 1,037)
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    • ecology: 1,698 (rank: 1,140 out of 15,355)
    • evolutionary biology: 7,476 (rank: 211 out of 18,794)
    • genomics: 17,821 (rank: 487 out of 39,209)
    • microbiology: 9,226 (rank: 746 out of 40,052)
    • molecular biology: 3,742 (rank: 433 out of 18,582)
    • neuroscience: 1,073 (rank: 14,086 (tie) out of 61,158)
    • systems biology: 2,567 (rank: 962 (tie) out of 10,819)

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Preprints

Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates

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Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

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Single cell epigenomic atlas of the developing human brain and organoids

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American Gut: an Open Platform for Citizen-Science Microbiome Research

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A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

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An integrated metagenomics pipeline for strain profiling reveals novel patterns of transmission and global biogeography of bacteria

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Transcription Factors Recognize DNA Shape Without Nucleotide Recognition

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Chromatin features constrain structural variation across evolutionary timescales

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Massively parallel dissection of human accelerated regions in human and chimpanzee neural progenitors

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Predicting 3D genome folding from DNA sequence

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Principles of Meiotic Chromosome Assembly

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Average genome size estimation enables accurate quantification of gene family abundance and sheds light on the functional ecology of the human microbiome

bioinformatics more details view paper
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A high-resolution, chromosome-assigned Komodo dragon genome reveals adaptations in the cardiovascular, muscular, and chemosensory systems of monitor lizards

genomics more details view paper
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Phylogeny-corrected identification of microbial gene families relevant to human gut colonization

bioinformatics more details view paper
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Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial

clinical trials more details view paper
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Molecular basis of CTCF binding polarity in genome folding

molecular biology more details view paper
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Proteobacteria drive significant functional variability in the human gut microbiome

bioinformatics more details view paper
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Most regulatory interactions are not in linkage disequilibrium

genomics more details view paper
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Protein binding and methylation on looping chromatin accurately predict distal regulatory interactions

bioinformatics more details view paper
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Genomic analyses for age at menarche identify 389 independent signals and indicate BMI-independent effects of puberty timing on cancer susceptibility

genomics more details view paper
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Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice

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Climate change will lead to pronounced shifts in the diversity of soil microbial communities

ecology more details view paper
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Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

evolutionary biology more details view paper
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Automated and accurate estimation of gene family abundance from shotgun metagenomes

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A most wanted list of conserved protein families with no known domains

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Features of ChIP-seq data peak calling algorithms with good operating characteristics

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AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design

bioinformatics more details view paper
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A Chromatin Accessibility Atlas of the Developing Human Telencephalon

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Longitudinal linked read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment

microbiology more details view paper
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Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming

molecular biology more details view paper
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Semi-supervised identification of cell populations in single-cell ATAC-seq

bioinformatics more details view paper
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phylogenize: correcting for phylogeny reveals genes associated with microbial distributions

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A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota

microbiology more details view paper
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Evolution of mechanisms that control mating in Drosophila males

neuroscience more details view paper
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Global ecotypes in the ubiquitous marine clade SAR86

ecology more details view paper
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The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation

microbiology more details view paper
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Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

evolutionary biology more details view paper
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Drug resistant gut bacteria mimic a host mechanism for anticancer drug clearance

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Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults

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A computational framework for detecting signatures of accelerated somatic evolution in cancer genomes

bioinformatics more details view paper
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The geometry of the distance-decay of similarity in ecological communities

ecology more details view paper
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Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages

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