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Author: Andrew Rambaut

  • Most recently observed institution: University of Edinburgh

Rankings

  • All-time downloads: 73,344 (rank: 569 (tie) out of 448,974)
  • Categories:
    • bioinformatics: 711 (rank: 16,776 (tie) out of 36,834)
    • epidemiology: 6,767 (rank: 30 out of 9,545)
    • evolutionary biology: 21,249 (rank: 59 out of 22,147)
    • genetics: 26,615 (rank: 214 out of 38,573)
    • genomics: 4,307 (rank: 4,995 (tie) out of 45,497)
    • microbiology: 13,695 (rank: 777 out of 52,210)

Downloads per author, site-wide

Preprints

The emergence of SARS-CoV-2 in Europe and the US

genetics more details view paper
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  • Download rankings, all-time:
    • Site-wide: 64 out of 106,159
    • In genetics: 3 out of 5,105
  • Year to date:
    • Site-wide: 37 out of 106,159
  • Since beginning of last month:
    • Site-wide: 405 out of 106,159

Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic

evolutionary biology more details view paper
  • Downloaded 15,412 times
  • Download rankings, all-time:
    • Site-wide: 144 out of 106,159
    • In evolutionary biology: 6 out of 6,128
  • Year to date:
    • Site-wide: 74 out of 106,159
  • Since beginning of last month:
    • Site-wide: 446 out of 106,159

The circulating SARS-CoV-2 spike variant N439K maintains fitness while evading antibody-mediated immunity

microbiology more details view paper
  • Downloaded 7,647 times
  • Download rankings, all-time:
    • Site-wide: 455 out of 106,159
    • In microbiology: 82 out of 9,238
  • Year to date:
    • Site-wide: 176 out of 106,159
  • Since beginning of last month:
    • Site-wide: 8 out of 106,159

A dynamic nomenclature proposal for SARS-CoV-2 to assist genomic epidemiology

microbiology more details view paper
  • Downloaded 5,621 times
  • Download rankings, all-time:
    • Site-wide: 736 out of 106,159
    • In microbiology: 116 out of 9,238
  • Year to date:
    • Site-wide: 258 out of 106,159
  • Since beginning of last month:
    • Site-wide: 279 out of 106,159

Rapid SARS-CoV-2 whole genome sequencing for informed public health decision making in the Netherlands

genomics more details view paper
  • Downloaded 4,307 times
  • Download rankings, all-time:
    • Site-wide: 1,203 out of 106,159
    • In genomics: 241 out of 6,382
  • Year to date:
    • Site-wide: 360 out of 106,159
  • Since beginning of last month:
    • Site-wide: 4,053 out of 106,159

MERS-CoV recombination: implications about the reservoir and potential for adaptation

evolutionary biology more details view paper
  • Downloaded 2,380 times
  • Download rankings, all-time:
    • Site-wide: 3,272 out of 106,159
    • In evolutionary biology: 115 out of 6,128
  • Year to date:
    • Site-wide: 12,752 out of 106,159
  • Since beginning of last month:
    • Site-wide: 20,674 out of 106,159

Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic.

epidemiology more details view paper
  • Downloaded 2,379 times
  • Download rankings, all-time:
    • Site-wide: 3,275 out of 106,159
    • In epidemiology: 22 out of 1,556
  • Year to date:
    • Site-wide: 24,763 out of 106,159
  • Since beginning of last month:
    • Site-wide: 29,527 out of 106,159

MERS-CoV spillover at the camel-human interface

epidemiology more details view paper
  • Downloaded 1,714 times
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    • Site-wide: 5,611 out of 106,159
    • In epidemiology: 44 out of 1,556
  • Year to date:
    • Site-wide: 18,938 out of 106,159
  • Since beginning of last month:
    • Site-wide: 25,008 out of 106,159

Identification of a common deletion in the spike protein of SARS-CoV-2

genetics more details view paper
  • Downloaded 1,699 times
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    • Site-wide: 5,699 out of 106,159
    • In genetics: 394 out of 5,105
  • Year to date:
    • Site-wide: 1,277 out of 106,159
  • Since beginning of last month:
    • Site-wide: 10,890 out of 106,159

Multiple introductions of Zika virus into the United States revealed through genomic epidemiology

epidemiology more details view paper
  • Downloaded 1,657 times
  • Download rankings, all-time:
    • Site-wide: 5,987 out of 106,159
    • In epidemiology: 49 out of 1,556
  • Year to date:
    • Site-wide: 59,207 out of 106,159
  • Since beginning of last month:
    • Site-wide: 51,931 out of 106,159

Accommodating individual travel history, global mobility, and unsampled diversity in phylogeography: a SARS-CoV-2 case study.

evolutionary biology more details view paper
  • Downloaded 1,346 times
  • Download rankings, all-time:
    • Site-wide: 8,541 out of 106,159
    • In evolutionary biology: 412 out of 6,128
  • Year to date:
    • Site-wide: 1,865 out of 106,159
  • Since beginning of last month:
    • Site-wide: 5,199 out of 106,159

BEAST 2.5: An Advanced Software Platform for Bayesian Evolutionary Analysis

evolutionary biology more details view paper
  • Downloaded 1,227 times
  • Download rankings, all-time:
    • Site-wide: 9,942 out of 106,159
    • In evolutionary biology: 498 out of 6,128
  • Year to date:
    • Site-wide: 36,701 out of 106,159
  • Since beginning of last month:
    • Site-wide: 48,512 out of 106,159

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak

epidemiology more details view paper
  • Downloaded 1,017 times
  • Download rankings, all-time:
    • Site-wide: 13,502 out of 106,159
    • In epidemiology: 134 out of 1,556
  • Year to date:
    • Site-wide: 39,070 out of 106,159
  • Since beginning of last month:
    • Site-wide: 42,988 out of 106,159

Temporal signal and the phylodynamic threshold of SARS-CoV-2

evolutionary biology more details view paper
  • Downloaded 884 times
  • Download rankings, all-time:
    • Site-wide: 16,890 out of 106,159
    • In evolutionary biology: 970 out of 6,128
  • Year to date:
    • Site-wide: 3,468 out of 106,159
  • Since beginning of last month:
    • Site-wide: 10,315 out of 106,159

Rapid and sensitive direct detection and identification of poliovirus from stool and environmental surveillance samples using nanopore sequencing

microbiology more details view paper
  • Downloaded 427 times
  • Download rankings, all-time:
    • Site-wide: 45,380 out of 106,159
    • In microbiology: 3,331 out of 9,238
  • Year to date:
    • Site-wide: 10,881 out of 106,159
  • Since beginning of last month:
    • Site-wide: 20,873 out of 106,159

MAJORA: Continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance

bioinformatics more details view paper
  • Downloaded 380 times
  • Download rankings, all-time:
    • Site-wide: 51,281 out of 106,159
    • In bioinformatics: 5,861 out of 9,474
  • Year to date:
    • Site-wide: 13,040 out of 106,159
  • Since beginning of last month:
    • Site-wide: 680 out of 106,159

SANTA-SIM: Simulating Viral Sequence Evolution Dynamics Under Selection and Recombination

bioinformatics more details view paper
  • Downloaded 331 times
  • Download rankings, all-time:
    • Site-wide: 58,153 out of 106,159
    • In bioinformatics: 6,417 out of 9,474
  • Year to date:
    • Site-wide: 84,554 out of 106,159
  • Since beginning of last month:
    • Site-wide: 79,525 out of 106,159

Methylation-Based Age Estimation in a Wild Mouse

genetics more details view paper
  • Downloaded 149 times
  • Download rankings, all-time:
    • Site-wide: 89,303 out of 106,159
    • In genetics: 4,622 out of 5,105
  • Year to date:
    • Site-wide: 46,433 out of 106,159
  • Since beginning of last month:
    • Site-wide: 29,574 out of 106,159

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